Basic Information

Insect: Psococerastis gibbosa
Gene Symbol: -
Assembly: GCA_963971405.1
Location: OZ020490.1:30378307-30379128[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.1e-05 0.00071 20.4 1.5 1 20 17 36 17 39 0.96

2 9 3.1e-05 0.002 18.9 1.2 1 23 45 67 45 67 0.99

3 9 5.4e-05 0.0036 18.2 5.4 1 23 73 95 73 95 0.98

4 9 1.4e-06 9.2e-05 23.2 0.9 1 23 102 124 102 124 0.97

5 9 5e-06 0.00033 21.4 0.8 1 23 130 152 130 152 0.99

6 9 1.3e-05 0.00084 20.2 1.8 1 23 158 180 158 180 0.98

7 9 0.0015 0.1 13.6 2.7 1 23 186 208 186 208 0.95

8 9 0.0009 0.059 14.3 6.9 1 23 214 236 214 236 0.98

9 9 6.1e-05 0.0041 18.0 2.4 1 23 242 265 242 265 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.1e-05	0.00071	20.4	1.5	1	20	17	36	17	39	0.96
2	9	3.1e-05	0.002	18.9	1.2	1	23	45	67	45	67	0.99
3	9	5.4e-05	0.0036	18.2	5.4	1	23	73	95	73	95	0.98
4	9	1.4e-06	9.2e-05	23.2	0.9	1	23	102	124	102	124	0.97
5	9	5e-06	0.00033	21.4	0.8	1	23	130	152	130	152	0.99
6	9	1.3e-05	0.00084	20.2	1.8	1	23	158	180	158	180	0.98
7	9	0.0015	0.1	13.6	2.7	1	23	186	208	186	208	0.95
8	9	0.0009	0.059	14.3	6.9	1	23	214	236	214	236	0.98
9	9	6.1e-05	0.0041	18.0	2.4	1	23	242	265	242	265	0.96

Sequence Information

Coding Sequence: ATGACTCACCTCAGGTTGCACTTGTTGGTACATACAGGTGAGAAAACTTTCGAGTGTGAGCACTGCGATAAAAAATTCGGGAAAAAAGGTCAGCTTAAAACGCATATGCCTGCTCACACGGGTGAGTACCCTTATCAGTGTTACGTTTGCTTCAAAGGCTTCGCTTTTAAGCAAGGCTTGAATAATCATGTAAGaacccacacaggggagaaGCCTTTCGAGTGCGATGAGTGCCATAGAACGTTTCGTACTAGTGGCTGTGTTGCTAAACATAAACGAACCCATTTGCCTAATAAGGATTCATTTGCGTGTGAACTGTGTAAGAAGACGTTTTCCCAAAGACAAGGCCTTAGTATGCATATGCGTGTACATACGGGGGCTAAACCGTATGAGTGTGAGGTTTGTTTTAAGGCATTTGCCCAAAGACAAGCTCTCACTACGCATTTTCGAACACACACTGGAGCTAAGCCTTATATGTGCAATCAGTGTCATAAGGCGTATCGGCAAATTGGGCAGCTTAAGGAACATTTGCTTACTCACTCCGATGTGAGGTCGTTCGTTTGTGACGTGTGTAATAAGTCGTTTAAGCAGCGGGGTATTCTGAGGTGCCATATGAAATTACACTTCGGTTCCAAGCGATTTAAGTGTAAAGAGTGTAAGCTGCGGTTTTTTTCGAAAAGTTGTCTGGATAAGCATATGTTTTCACATACGGGGCTGCGGCCATATGCTTGCCCGATTTGTACGAAAACGTTTAAATGGAAACAGCATGTTAAGAGGCATATGAAACAGGTACATTCTGTTGTTGCATATAACTTTGGttga
Protein Sequence: MTHLRLHLLVHTGEKTFECEHCDKKFGKKGQLKTHMPAHTGEYPYQCYVCFKGFAFKQGLNNHVRTHTGEKPFECDECHRTFRTSGCVAKHKRTHLPNKDSFACELCKKTFSQRQGLSMHMRVHTGAKPYECEVCFKAFAQRQALTTHFRTHTGAKPYMCNQCHKAYRQIGQLKEHLLTHSDVRSFVCDVCNKSFKQRGILRCHMKLHFGSKRFKCKECKLRFFSKSCLDKHMFSHTGLRPYACPICTKTFKWKQHVKRHMKQVHSVVAYNFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -