Basic Information

Insect: Psococerastis gibbosa
Gene Symbol: ECU06_1150
Assembly: GCA_963971405.1
Location: OZ020488.1:33032088-33047851[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.4e-06 0.00023 21.9 1.2 1 23 254 276 254 276 0.99

2 10 0.0049 0.32 12.0 2.6 1 23 282 304 282 304 0.98

3 10 0.0013 0.088 13.8 2.6 1 23 310 332 310 332 0.98

4 10 7.8e-05 0.0052 17.7 1.7 1 23 338 360 338 360 0.99

5 10 1.8e-06 0.00012 22.8 0.6 1 23 366 388 366 388 0.98

6 10 3.3e-05 0.0022 18.8 3.4 1 23 399 421 399 421 0.98

7 10 2e-05 0.0013 19.6 0.2 1 23 427 449 427 449 0.99

8 10 0.00011 0.0074 17.2 4.7 1 23 455 477 455 477 0.98

9 10 2.1e-06 0.00014 22.6 3.5 1 23 483 505 483 505 0.98

10 10 0.0011 0.072 14.1 2.3 1 23 512 534 512 535 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.4e-06	0.00023	21.9	1.2	1	23	254	276	254	276	0.99
2	10	0.0049	0.32	12.0	2.6	1	23	282	304	282	304	0.98
3	10	0.0013	0.088	13.8	2.6	1	23	310	332	310	332	0.98
4	10	7.8e-05	0.0052	17.7	1.7	1	23	338	360	338	360	0.99
5	10	1.8e-06	0.00012	22.8	0.6	1	23	366	388	366	388	0.98
6	10	3.3e-05	0.0022	18.8	3.4	1	23	399	421	399	421	0.98
7	10	2e-05	0.0013	19.6	0.2	1	23	427	449	427	449	0.99
8	10	0.00011	0.0074	17.2	4.7	1	23	455	477	455	477	0.98
9	10	2.1e-06	0.00014	22.6	3.5	1	23	483	505	483	505	0.98
10	10	0.0011	0.072	14.1	2.3	1	23	512	534	512	535	0.96

Sequence Information

Coding Sequence: ATGTCTCCCCTTAATTTAATGGAATTATGTCGTTTGTGCTTAGTGAAAGATACTGTACGAATTCCGATATTCGATGGAGAAGGAGATGTACGCCAAATATTCCTGAAAATTGCCGCTTGTCTTCCAATCAAGGTTAGAAAAGACGACAAGCTACCCAAGAAAATCTGTGATGACTGCTTGTACAAGGTTGAACTATTGTACCAGTTTTGGAATACTACTTCTAATGCGGAGAAACAATTACTTGAGTGGCTGGCAGAGTCCGCAGATGAGAAAAAGACTGACATCAAGACGGTGGCAATTGTGGAGCAGCAGGATGGCTCCGAGTTTGCGAATAGTCTGAGTGGAGTAGAAGCTGTGTTGGCTGAAACTCGAGAAGCTGAGTCTGATTCAGATCACTTTGCTGAGCCAACTAAGCCAGAGACTGACTCGGATGATGAGCCACTCAGTACACTCGAACGGTCAGCTATGGCTCGAGTTAGTAATACAGCTCCGTCTTCATCTACTGCCACAGCATCCAATGTCTCTGAAGTTATGAATATGGACACCTCTACTACCATTTCCGATGACACTGCTCCCAGCATATCTCAACAACCTCAGTCCAGCGGGAGGACGAATGATGATTGTGATCAGGCAAAGAAATGTAACAAGAAGAAAAGACTAATTGATCGGGGAGGGCCCAGGAAATGTAAACATTGTGACTATGTCGCTGTGTTACATCGTATGGTGGTTCATGAACGCAGGCATACGGGCGAGCGTCCCTACAAGTGTAAAGTCTGTGGAAAGACCTTTATGGCCAACGGAACGCTGACCAAACACTACTTGACCCACGTCGGAGGGACCCCTTTCGAGTGCGAATTatgcttcaaaaaattcaaactaagAAATGCCCTGTACATTCACAAGAAACGACACTCGGATGGCAAAGCATTCCATTGCGATCTCTGTGGTTACTCCGCCTATCAAAAATCCAATTTGGATCTCCATAAGCGCCGTCACTTCGGACATTACAAATATGTTTGTACTGATTGCAATAAGGGGTTTTACGTCCGCCACGAATATGCAAGTCATCTAAATACTCATACAGGAAGAAAGCCCTTCGAATGTAACGTTTGTGGAAAATCATACCCATTTCAATCGAGCCTTTATTATCATATGAATATTCACGATACAAATGGCAAGAGCAAAGCGAAAAATTACCATTGTGAGACATGTAGCATGACATTTTCATCGCCTTCTAGACTATCGAATCACCAGAGGACTCACACTGGGGTTAAAGCGTATTCATGTGACTTTTGTGGCCGCGGTGTTGCTACCAAAGAATCACTTAATGACCATATTAAAACCCATACTGGGGAGAAGCCTCACAAGTGTAGCTTTTGCACGAAAGCTTTCATAAAAAAGTCACTACTTAAGACCCATGAACGATCTCATACCGGGGAGAAACCCTTCCACTGTTCTTTTTGTGGCAAGGATTTCACCCAGCAGTCCTCACTATCCATTCATATGAAAAGCCATAGTGAGTCGAGAGCTCTTTACAAGTGTGAAACATGTGCCATGTCGTTTCCGAGTAAAACGTCGTTTATTGGCCACCAGAAGAGTCATCACCCAAGTGAAGTGTGGCCTACACCGATGACTGTGGCTGTCCCGTATAACATGCCCTTTATGACAACTCCAAGTTGA
Protein Sequence: MSPLNLMELCRLCLVKDTVRIPIFDGEGDVRQIFLKIAACLPIKVRKDDKLPKKICDDCLYKVELLYQFWNTTSNAEKQLLEWLAESADEKKTDIKTVAIVEQQDGSEFANSLSGVEAVLAETREAESDSDHFAEPTKPETDSDDEPLSTLERSAMARVSNTAPSSSTATASNVSEVMNMDTSTTISDDTAPSISQQPQSSGRTNDDCDQAKKCNKKKRLIDRGGPRKCKHCDYVAVLHRMVVHERRHTGERPYKCKVCGKTFMANGTLTKHYLTHVGGTPFECELCFKKFKLRNALYIHKKRHSDGKAFHCDLCGYSAYQKSNLDLHKRRHFGHYKYVCTDCNKGFYVRHEYASHLNTHTGRKPFECNVCGKSYPFQSSLYYHMNIHDTNGKSKAKNYHCETCSMTFSSPSRLSNHQRTHTGVKAYSCDFCGRGVATKESLNDHIKTHTGEKPHKCSFCTKAFIKKSLLKTHERSHTGEKPFHCSFCGKDFTQQSSLSIHMKSHSESRALYKCETCAMSFPSKTSFIGHQKSHHPSEVWPTPMTVAVPYNMPFMTTPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -