Pgib014563.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- ZFX
- Assembly
- GCA_963971405.1
- Location
- OZ020488.1:34055240-34060431[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.2 1.5e+02 3.6 0.2 2 23 6 27 5 27 0.90 2 16 7.1 4.7e+02 2.1 6.0 1 23 443 466 443 466 0.97 3 16 0.066 4.4 8.5 0.1 2 23 474 495 473 495 0.95 4 16 0.0059 0.39 11.8 0.3 3 23 516 537 515 537 0.96 5 16 0.00095 0.063 14.3 1.2 1 23 542 564 542 564 0.98 6 16 5.6e-07 3.7e-05 24.4 1.9 2 23 567 588 566 588 0.97 7 16 0.00013 0.0089 16.9 0.2 1 23 594 616 594 616 0.96 8 16 3.8e-05 0.0025 18.7 6.2 2 23 623 644 622 645 0.94 9 16 2.2 1.4e+02 3.7 1.2 6 23 659 676 657 676 0.95 10 16 0.019 1.3 10.2 3.5 2 23 682 704 681 705 0.95 11 16 9.6e-05 0.0063 17.4 0.2 2 23 721 741 720 741 0.97 12 16 7.9e-05 0.0053 17.6 1.3 1 21 747 767 747 769 0.92 13 16 0.0057 0.38 11.8 0.6 1 23 777 799 777 799 0.98 14 16 0.0018 0.12 13.4 2.6 1 23 805 827 805 827 0.96 15 16 3.1e-05 0.0021 18.9 3.2 1 23 833 857 833 857 0.97 16 16 0.00088 0.058 14.4 6.7 1 23 863 885 863 885 0.98
Sequence Information
- Coding Sequence
- ATGAGCGGGTTACAAGAGTGCCCCGTATGCACTCTATTTATGAGAGAAGGTATTTCACTACGGAAACATTTAGAGACGCATCCCAAAGATCAAGTCATTGAAGCTCTTCTACAGCTTAAACGTGAGCCAGAGCTAAGTAATGGATTTGTGGGCAGTAACTCTATATCCAATCAGATAGTGCCAACAATTCAGCCTTCCCCACACCATACCGCTGCATTTACATACCAGCAAATTCTTACCACTAACTCATCAGGGGCAGTTGTTCCACAATACATGCAGATTCCTATGCTGGTCAATCCTGCATTTCAAATGGGTCATGGAGGAACGTTTCCTGGTCTCTTTAATCAAGTTGTCGGCAATTCTTATGGTACGCAACCGTATGTCATTGGCAACTCTAATTCTAATGCATCAGCTAATCCGCCTGTTAGCTCGGCAACTGCCACTGTTCAACACGATCCCATCATCGTTGAAGCTACTGTTGTGGAGGAGGAAGTTTCTGGGCCCCAGGAGTGCAGCGAAATGGAAATGAGCGATTCCTTGCCATCAACACCCGCATCCACTCCACCACCTCTTACATCGGTCATTATGTCGCGACCATCTTCTAGCTTGTCATCTTCCCATTCAGATATTCTCTGTTCTCCTCCTCCTTCGCCAAGTGTTGCATCATGTAAGGCAGAGGAAACGGTAATAGTTGAAACACAATTCGCCAATCAGCCGACAGAGGCAGACGATTGCCACGACTTCCGACAAGCGTACAAAGTGGAGGAGACTGCAGAGCAATCGGGGCTAGAAGAACTCGATGGCAATTATGAGAACCAAGACGATATTGATTATTATTCCGTGGAAAATGAAGAAGACGTTGGCATAGATATAAAGGAAACTGGCGAGCTTTATGGTGATTTGAATGTTGACTTTGAAGAAGCGAGTTCACCTGTTTACGCAGACCTGCTACCCGCTCCATCTACTTCAGAAGGAACTCATAGATTGCTGCAAGAATTTAATAAcgATCTCAAGGCAGGAACTAGCACAACATTCATGGAGCTCGATGGAATCCGAGTATTTTTCAATGGATCAGTTTTATCTGCATCACCTAGGGAAACAAATTTATCGGCATCAAAAAGTTGCTCCGTCATCCAATTAGCCGATTCTACGAAGCCTGAAATTCACGACACTAAGTCTATTGAAGATGTCAAAGAAACATCTTTGAACATATTGGCAGATGAGTCAATGCCTGCTAGAGGAGAGTTGTCAGAGCAAGAAAGTTTGGGAGCTGACTCTGCATGGGGGCTGTTCCAACAAGACGTAAAAGACTGGACCAAAAAGCCATTTAAGTGCTCATCATGTGATTCATGCTTCACATGCCCGAAAGAACGAAGGGTACATAGAAATACAGTTCATGGAAAGCCTGCCAAAGTTATTCGCTGTACTGCCTGTCCAGCGGTGTTCACTACCCTTAGGGACCGTAGAATACATATGGCTGAACATGATGGTTCCACAGTCAAGGCTGAACCTGGAGAAGAACCTTCTTCATCCACAAGTCGTGCATGTCGAGAGTGCCCGACCACTGTGACTAACCTCAAAGCTTTTCGAATCCATATGCGTGAATCCCATAATGTTTCACGGTTCCGTTGTGAGACATGTGAGACTTGTTTTGACGACGAACCTGACTTCAACGAGCACCTCAAGGTGCATCCGCTCAAGTGCCCACAGTGCGACAAGACATTCTATCGGCGTGCCAACTTGAACCTCCATCGACGACGCCATATGGATGTTAAGCCATTTGAGTGTTCCTTGTGCCCAAAGTCATTCATAACGCGGCAAAAATTGGAAGAGCACGCTAATGGCCATGCTGGGTTAAAGCCAATAAAATGCAACCTCTGTAATAAAACGTTCAGTCGCCATTCGAATCTAATTCAACACCGCAATTTCCATCATCTTAAAAGCAAGAAGAAGGTTCGAGACTATGTATGCAGATGTGGAGAAATTTTCCATagccaaaaaaaattagacTGGCATAAAGAAATTCATGACATCAAACCAAAGTCGTGTCCATTCTGCTCCCAAAAGTTCATACACGCAGCCAGCGTGACGCGTCACGCTCGCAGGACACATCACCCCGACTATCTGCCCGAGGGATCCAGTCGTGATGAGGAAAACGTCTCCTGCCCCATATGTGACAAGATGTATCTACGAAGCTCCCTTCAGATTCATATGCGCGTGCATAGTGGAGAACGGCCCTTCCAATGTAACATCTGCTCGAAAAAATTCTCGACCAAATGGAATATGGAGCTACACCAGTGGACACACCAGTCCCGCTCGCAGATGCCCTACAAGTGTACCATGTGCAAGAGCGCCTTTTTTCGCGAGACTGACTACATTGCCCATCTCAACGCACACAAGAACCTCAAGCCGTTCATCTGCAACGTGTGTGGGCAGAAGTTCATCAGAAAGTACAACTGTCTGAGGCATCAGGAAGAGCATCGCCGAGCTAAGAGGTTCTCGTGCTCGGTCCGGGGCTGCGATAAAACCTTCCACCGCAGCTACTATCTCAAGGACCACATGAAGGTGCACACGGGTGTCAGACCTCACACCTGTCACATATGTGGCAAAGCCTCAACAACCAAGTCTAATCATAACAAACATCTGCGTATCCATGATACCAGAGAACCGGTAAATACCGAAAATTAG
- Protein Sequence
- MSGLQECPVCTLFMREGISLRKHLETHPKDQVIEALLQLKREPELSNGFVGSNSISNQIVPTIQPSPHHTAAFTYQQILTTNSSGAVVPQYMQIPMLVNPAFQMGHGGTFPGLFNQVVGNSYGTQPYVIGNSNSNASANPPVSSATATVQHDPIIVEATVVEEEVSGPQECSEMEMSDSLPSTPASTPPPLTSVIMSRPSSSLSSSHSDILCSPPPSPSVASCKAEETVIVETQFANQPTEADDCHDFRQAYKVEETAEQSGLEELDGNYENQDDIDYYSVENEEDVGIDIKETGELYGDLNVDFEEASSPVYADLLPAPSTSEGTHRLLQEFNNDLKAGTSTTFMELDGIRVFFNGSVLSASPRETNLSASKSCSVIQLADSTKPEIHDTKSIEDVKETSLNILADESMPARGELSEQESLGADSAWGLFQQDVKDWTKKPFKCSSCDSCFTCPKERRVHRNTVHGKPAKVIRCTACPAVFTTLRDRRIHMAEHDGSTVKAEPGEEPSSSTSRACRECPTTVTNLKAFRIHMRESHNVSRFRCETCETCFDDEPDFNEHLKVHPLKCPQCDKTFYRRANLNLHRRRHMDVKPFECSLCPKSFITRQKLEEHANGHAGLKPIKCNLCNKTFSRHSNLIQHRNFHHLKSKKKVRDYVCRCGEIFHSQKKLDWHKEIHDIKPKSCPFCSQKFIHAASVTRHARRTHHPDYLPEGSSRDEENVSCPICDKMYLRSSLQIHMRVHSGERPFQCNICSKKFSTKWNMELHQWTHQSRSQMPYKCTMCKSAFFRETDYIAHLNAHKNLKPFICNVCGQKFIRKYNCLRHQEEHRRAKRFSCSVRGCDKTFHRSYYLKDHMKVHTGVRPHTCHICGKASTTKSNHNKHLRIHDTREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -