Pgib003018.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020484.1:43412451-43414763[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.2e-07 4.8e-05 24.1 1.0 1 23 55 77 55 77 0.98 2 11 0.0084 0.56 11.3 0.9 1 23 115 137 115 138 0.91 3 11 0.00049 0.032 15.2 0.7 2 23 142 164 141 164 0.94 4 11 4.3e-05 0.0028 18.5 4.0 2 23 170 191 169 191 0.96 5 11 0.00016 0.01 16.7 1.9 1 23 197 219 197 219 0.98 6 11 0.017 1.1 10.3 3.2 1 23 225 248 225 248 0.92 7 11 3.7e-07 2.4e-05 25.0 0.2 2 23 266 288 266 288 0.97 8 11 0.0001 0.0069 17.3 2.8 1 23 294 317 294 317 0.97 9 11 5.5e-07 3.6e-05 24.4 1.0 1 23 324 346 324 346 0.99 10 11 4.9e-06 0.00032 21.5 1.3 1 23 352 374 352 375 0.96 11 11 2.9e-06 0.00019 22.1 0.5 2 23 389 410 388 410 0.96
Sequence Information
- Coding Sequence
- ATGTACCCGAAATCTAAGCCAAAACTAAAAAGCACAGAATCCCCTACCGAAACGGACCTAGCCAGACTCGCCATCCCAGTGGGATGGCTTCAAACACTGACCTGCGATGTTTGCGACAAAATTGGCCAACCCGCCCATGAAAGCGACGGCCAAGAACTCAAATTCAGCTGCGGCCAATGTAACAAGGCGTTCGCCACGCAGACAAATTATATGCGGCACTTACGGGTACACAAGAAACAGACCAGTGGCGAAAATCAATACGGCTGTCGTAATTGCCTGCGAAAATACAAATTTGAAAGTTACGCGTTGGAACATGAGAAATTGTGTGGCGTCTTCGAGTTTTTCCCGTGTAGCGCCTGTGGAAGGCGGTTTTCCACGAAGGAGGAAGCAGACACGCATGCATACTCGCATCACTTGTCTTGTGTCTGCGAATTGTGTGGAATAGATTTTGAAAATTCGCAAAAATTTAAATGGCATATGAAGGCAGTTCATCAGAGCAATCGGTCGGTGTGTCATTATTGTGGCAAGAGTTTTACCCGGAAGCAGAGGCTGTTGGAACACTTCCAGAAGCATACAGGCCAAATGGACTTCACATGCGTAACATGTGGCAAAGGCTGCACAAACTCGTATTCGTTCAGCGTTCACCTCGCCACCCACTCCACTAACAAACCCTTCAAATGCTCCCTCTGCCCCCGAACGTTCAAGCACTTGAAATACCGATATCTCCACGAACGAGCAGTCCACCTGGAAGCCAAGCCAAAGTCCAAGAAACCTGCCAAAAATGCTGCCATAAGAACATGCCCAGACTGTGATAAGGTGTTCCGTAGAGAGAGCGCTTTGCTAATACATAGACGCTCTGTTCACGAAGGCCTTAACGGCTATATCTGTAAAATATGTAATAAGGACTTTAAGTATAGTTACATGTTGTATGTTCACAAGAAGAAGCAACATTATCCGCAGCGCTGTAAGTACAAGTGCTCGTATTGTGATAAGCCGTTTCCGGTCAAGACGGAACTACAGAAACATTTACTGAAACACACGGGCGAGAAGCCTTATGTGTGCGGTGAATGTGGGAAGAAGTATGCGTTTAAAGGGTCGCTAAATGCGCATCGTAAAAGCCACCACCCCAAACTGCCAGCCATCAGCACACGGAACAAGGAATCCGTTTGTTCACTTTGCGATGTTTCTTTTACTTATAAATCGCAGCTACTGAGGCACATGACTGTTCATGCTGATAGACTTAAGCCGGAAAATATTTGA
- Protein Sequence
- MYPKSKPKLKSTESPTETDLARLAIPVGWLQTLTCDVCDKIGQPAHESDGQELKFSCGQCNKAFATQTNYMRHLRVHKKQTSGENQYGCRNCLRKYKFESYALEHEKLCGVFEFFPCSACGRRFSTKEEADTHAYSHHLSCVCELCGIDFENSQKFKWHMKAVHQSNRSVCHYCGKSFTRKQRLLEHFQKHTGQMDFTCVTCGKGCTNSYSFSVHLATHSTNKPFKCSLCPRTFKHLKYRYLHERAVHLEAKPKSKKPAKNAAIRTCPDCDKVFRRESALLIHRRSVHEGLNGYICKICNKDFKYSYMLYVHKKKQHYPQRCKYKCSYCDKPFPVKTELQKHLLKHTGEKPYVCGECGKKYAFKGSLNAHRKSHHPKLPAISTRNKESVCSLCDVSFTYKSQLLRHMTVHADRLKPENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -