Pgib017525.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020489.1:40114501-40120148[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00059 0.039 14.9 1.1 1 23 103 127 103 127 0.92 2 20 0.045 2.9 9.0 0.9 1 23 129 152 129 152 0.95 3 20 0.021 1.4 10.0 1.0 2 19 159 176 158 181 0.95 4 20 4.2e-05 0.0028 18.5 0.4 1 23 189 212 189 212 0.97 5 20 6.1e-05 0.0041 18.0 2.4 1 23 230 252 230 253 0.96 6 20 8.2e-05 0.0054 17.6 0.3 1 23 265 287 265 287 0.97 7 20 0.00087 0.057 14.4 2.2 3 23 295 315 293 315 0.97 8 20 5.2e-05 0.0035 18.2 1.3 1 22 321 342 321 342 0.96 9 20 0.015 0.98 10.5 3.3 1 19 349 367 349 368 0.98 10 20 0.0026 0.17 12.9 0.4 2 23 408 429 407 429 0.95 11 20 0.45 30 5.8 2.2 1 23 435 457 435 457 0.90 12 20 0.011 0.72 10.9 0.5 1 21 463 483 463 484 0.94 13 20 0.61 40 5.4 3.2 1 23 542 564 542 564 0.97 14 20 0.00022 0.015 16.2 1.7 1 23 570 592 570 592 0.97 15 20 0.85 56 5.0 0.7 2 23 598 620 597 620 0.95 16 20 0.24 16 6.7 0.1 3 23 633 654 632 654 0.93 17 20 0.00089 0.059 14.3 0.4 3 23 676 697 675 697 0.97 18 20 2.2e-05 0.0015 19.4 0.7 2 23 709 730 709 730 0.97 19 20 0.0055 0.36 11.9 0.4 3 23 738 758 737 758 0.97 20 20 0.00055 0.037 15.0 0.3 1 19 764 782 764 785 0.94
Sequence Information
- Coding Sequence
- ATGCTGATGCTTGAGGTCGACTCTGACTCTGACGAGACCGTCATCGAcagatcatcatcatcatcacgtGGTTCCTCTGATCTCGAATCTGTTCCTTTGGCAACTCTAAAGAAGAACGCAACCTTGATAAGGAGCGGAAGTCCCGAAGAAAGCTTCGATTCCGATACTGATGATGCGACGCccaagaaaaagaggaaagttGCGGTTGAAACAAAATTATCCACGAAGACGCCTTTCCTTTCTACTACGAAGAAACAGACTGTCGTCGGAGAAACAATTCGAAATGGTGTTCAGGGAAAAGAACAGTTCACTTGCGACACATGCCTACGTAACTTCACCTCAAGACGGAGCCTTGTAAAACACATTGAGACCGGCCGACACGTCTTCCGCTGCAAACAATGTCCCGCGTATTTCCTCAAGTCGTCCACTCTGGAAAAACACGTTGCGTCCAAACACGTCGAAAAACCGTGCAACAAATGTCCTCTATGCTTCCAGGTCTTTTCCAACGAAGAAGAACTCAATGAACATTGTGTTAACGTGCATGAAATTGACAGTAATGTCGAATACCGGTGTGGAGAGTGCCCTAAAGTTTATAAGACTAAGGAAGGCCTAGAGTATCATGAGAAAAAAGTGCACGATGATGGTGATTTTAGTCgaggaaatgtaaaaaatatagaagTTCGGGAATTTACCTGCAAAACCTGCTCAAAAACGTTTGGCAGCAAAGTTTTACTTTCGGCGCATTTAAAGGTTCATCATGTCAGAAAAAATTTGAAGTACTTAACGGGTCGGTACCAATGTATCATCTGCCCCCGTTCTTTTACTAGTAGTGACGGCCTAAAGTACCATCTCGCGACTCATACGGGTGAACGCAAATATGGATGTGGACAGTGTACGAAGAGATTCATTAAAAAGACGCATCTTTTGGAGCATATATCTACGCATGGTGGAGCAAAGAGTTATAAGTGTGAAAGGTGCCCGCGGACTTTTACGACGCTAGCAACCTTCAAGAAACACTTGAAAATGTTCCCCGGAAATCATAGTTTTACGTGTGATAAATGCGGGAAACTTTATACCAAAGAGAGCAAGTTAGAGAAGCATTGTTGTGTAGCTTTAGAAGCGGTTACTCTTGACCCGGAAGTGACAGCCCAATTGTCTGAAGATATGATCGAGCAGTATTTGTGTATGACTGAAGAAGCGAATAAGGAAGCGGGGTTGAAGTCTTGTTATAAGTGTTTCAAAGTTTTCCCGAGTCTGGTTGCACTTCAGCAGCATCAAGAAGAGCATGTTGGTAAACAAACTTACCAGTGCCGGTTTTGTCCAAAAACCTTTCTCCGAGCTAATGAATTTAGTTTTCATATTAAAAATCATTTGGGTAGCACGCCGTACATGTGTTTACAATGTAAACGCAAATTTATATCACCGTTTACACTGGCTACCCACGCTAAAAAGTTTCCCGGTGAGCATAGTTTTACATGTACTAAGTGTAAACGCTGGTTTCCGTGTCCAGAGTATCTTCTTCGGCATGATTGTATTCTGCAAAACTGTGACTCGTTCGTCTGCGCTTGTGGAAAGGAGATTAAGGAGTGGGCGGATCTGGTGGGGCATGCGGGTGGTAAGCCACACAAATGTTGCGCTTGCGATCAGAAATTTACAGCGATTGTTCAGTTTGCGCTGCATATTAAGCGGCATACCGGTTTTCGCCCGTTCGCCTGCAACAAATGCGACAGAACGTTTCAGAAAAAGATGAACTGGTCCAAGCATTTACAGGTGCATGAACGAAAAGTTTTAAAGTGTGATTTGTGCGATTATGAGATACAGAGCCGGAAGCGGTTTAGCGCGCATATGGCAAAAAAGCATGATGTCTGCGGAGTGTTGGACTCGGATGGTACGTTATGCCCGACGTGTGGGGTGATGTTGGGTAGTTTGACACAGCTGAAGAGTCATGTCGAGCAGGAGCATGGCGGTTCAGTGATGCTGCCTGAGAgcgaggagaagaagaagaaggttctACCTACTGAGTTGTGCACGCTGTGTGGAAAGATGTTGAACAACAAGTATGGGCTGGCGTCACATCTGAAGAAAGTTCATGGACCCAAGGTGGCGAAGGAGGCAAAAACGCCTCAGTGTGGGACCTGCGGCGAAACCTTCAAAACCAAGGCCCGGTTGCAAAGACACCAAGACGTCCACGACGTGCCGGGTCCACGGCCCTGCAGCATCTGCAGCGTGAAGGTCAACAGCGCGAAGGAGCTGCGCACGCACCAGCGGCAGCACGATGAGTTGCGGCCCTTCTCGTGTCCGCGCTGCGGGAAGCACTTCAAGGTGGCGGCAAGTCTCAAGTACCACGCGACCATCTGCGGTGTGGAGAAGAAGAGACCACGTGCTACACCCGAGGATGAGGCTCCTGTTTATAAGTTAATTGCTGCCAATGGTACTGGATGGTGTCCTGAACTGTATTAA
- Protein Sequence
- MLMLEVDSDSDETVIDRSSSSSRGSSDLESVPLATLKKNATLIRSGSPEESFDSDTDDATPKKKRKVAVETKLSTKTPFLSTTKKQTVVGETIRNGVQGKEQFTCDTCLRNFTSRRSLVKHIETGRHVFRCKQCPAYFLKSSTLEKHVASKHVEKPCNKCPLCFQVFSNEEELNEHCVNVHEIDSNVEYRCGECPKVYKTKEGLEYHEKKVHDDGDFSRGNVKNIEVREFTCKTCSKTFGSKVLLSAHLKVHHVRKNLKYLTGRYQCIICPRSFTSSDGLKYHLATHTGERKYGCGQCTKRFIKKTHLLEHISTHGGAKSYKCERCPRTFTTLATFKKHLKMFPGNHSFTCDKCGKLYTKESKLEKHCCVALEAVTLDPEVTAQLSEDMIEQYLCMTEEANKEAGLKSCYKCFKVFPSLVALQQHQEEHVGKQTYQCRFCPKTFLRANEFSFHIKNHLGSTPYMCLQCKRKFISPFTLATHAKKFPGEHSFTCTKCKRWFPCPEYLLRHDCILQNCDSFVCACGKEIKEWADLVGHAGGKPHKCCACDQKFTAIVQFALHIKRHTGFRPFACNKCDRTFQKKMNWSKHLQVHERKVLKCDLCDYEIQSRKRFSAHMAKKHDVCGVLDSDGTLCPTCGVMLGSLTQLKSHVEQEHGGSVMLPESEEKKKKVLPTELCTLCGKMLNNKYGLASHLKKVHGPKVAKEAKTPQCGTCGETFKTKARLQRHQDVHDVPGPRPCSICSVKVNSAKELRTHQRQHDELRPFSCPRCGKHFKVAASLKYHATICGVEKKRPRATPEDEAPVYKLIAANGTGWCPELY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -