Basic Information

Insect: Psococerastis gibbosa
Gene Symbol: -
Assembly: GCA_963971405.1
Location: OZ020490.1:33650470-33657892[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00094 0.063 14.3 0.7 1 23 337 359 337 359 0.99

2 12 0.00021 0.014 16.3 0.0 1 23 364 388 364 388 0.97

3 12 0.00045 0.03 15.3 1.3 1 23 394 417 394 417 0.96

4 12 0.00022 0.014 16.3 2.2 1 23 754 776 754 776 0.97

5 12 6.9e-06 0.00046 21.0 1.9 1 23 782 804 782 804 0.99

6 12 2.1e-07 1.4e-05 25.7 1.4 1 23 810 832 810 832 0.98

7 12 4.9e-06 0.00032 21.5 2.3 1 23 838 860 838 860 0.99

8 12 3.7e-06 0.00024 21.9 2.2 1 23 866 888 866 888 0.99

9 12 6.5e-06 0.00043 21.1 1.8 1 23 894 916 894 916 0.98

10 12 4.4e-05 0.0029 18.5 1.1 1 23 922 944 922 944 0.98

11 12 7.6e-05 0.005 17.7 1.7 1 23 950 972 950 972 0.96

12 12 0.0016 0.1 13.6 0.1 1 23 978 1001 978 1001 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00094	0.063	14.3	0.7	1	23	337	359	337	359	0.99
2	12	0.00021	0.014	16.3	0.0	1	23	364	388	364	388	0.97
3	12	0.00045	0.03	15.3	1.3	1	23	394	417	394	417	0.96
4	12	0.00022	0.014	16.3	2.2	1	23	754	776	754	776	0.97
5	12	6.9e-06	0.00046	21.0	1.9	1	23	782	804	782	804	0.99
6	12	2.1e-07	1.4e-05	25.7	1.4	1	23	810	832	810	832	0.98
7	12	4.9e-06	0.00032	21.5	2.3	1	23	838	860	838	860	0.99
8	12	3.7e-06	0.00024	21.9	2.2	1	23	866	888	866	888	0.99
9	12	6.5e-06	0.00043	21.1	1.8	1	23	894	916	894	916	0.98
10	12	4.4e-05	0.0029	18.5	1.1	1	23	922	944	922	944	0.98
11	12	7.6e-05	0.005	17.7	1.7	1	23	950	972	950	972	0.96
12	12	0.0016	0.1	13.6	0.1	1	23	978	1001	978	1001	0.92

Sequence Information

Coding Sequence: ATGGAGTCAGCTGATCTAAGCCTTTTTGAAGCATCTAAAACAAATCTTGAAGAACTGCTGACTTCTGTGCAACCTTCTGATGCGCATTGCGTTGGGAACGGCCGAAGTTCACTAGAAATGGACCCTTTTCTGAACCCCTCGAACTTGCAACTGCAGAGAGCTAAAGAATGGGCTCTCAAATATATGAGCGGATGCTGCAGTTCTGCGGGAGACACAGTCCCTGCTGAAGAAGAAATAAACTCTACAGAAATCACTGTGGATGTGAGTGGTGCAGGTATGGTCAATGATGAAGACCTGTCGGATTGCAATGATAATAATTCGCTTGAAAACCAGAAAACTATCGTGAGGCCAATGGTTATCATCGATGTTCGTGACCAAAACCGTGCTATCAAAAATACACAGCAAGGAACTGGAGAAGATGTGGAGTCTGATGCATCAACCATAGGGGAGCTGCCGAATAGTATTGAGCATAATTTGTCCGAAACCCGAAGAGCTGTAGTGGAAGCAATCCTCGTCAACAAGGCTCGTAACCAAAACAGTCCTTTAAAAGATACACAGCAAGTAACTGTAGAAATTGTGCAGGCTCAAGTGCCAACCATAGAACAGTGGCAGCATAAAGATAAAGAGCGGAATTCCCCAGGAAATCGAAAACCTGTTGTGGAGCCAATCGCCAGCGTCGATGATCGTCACCACAAATCTCTAATCAAAAATACTCAGCTAGTAACTGGAGAAGATGTGCAGTCTGAATTAACACGTCCTGTAGACGAACGACTGAATAACAATGAACAAAATTCGCCAGAAAATCGTGTAGTGGAGCCTACGGTTGACCTCGATATTTATCGCCGAAACTGTCCTATTAAAACGACGCAGGCAAGAGAAAAAGTGCAACCTGCCGTACAAACTGTTGAAGAGCCGCCGTGTAACAATAAGCTATATTCGCAAAACCGAAAGTCTGCCTTGGAAATCTCATCGCGTCCAAGTTGCGGCAAAAATTATGCAGGAAAAATGTATGAGTGTCCAATGTGTTGTGAGGGGTTTATAGAGAACGTTGAACTGAAGAAGCATTTACGGACCCACAAAGAAAGTAAATTCACCTGTGAAGTTCCAGATTGCGGCGAACAGTTTCAAGATGCTTCCACGCTGGAACTCCACATTGCCACTCATAAACATAAAGCACCGTATTCTTGTAAGATTTGCGGGAATCTGTATAGCAGGCAGGGTTGTTTGCAGACGCACATGCTCTTAGTACACCAACCGCTATGCCAGCCCTGTAACAAACGGTTTAATAGTTATCTTGAATACATGTTTCATCTTGAAAATGAGCATCAGCCCAACAAGTGTGAACATTGTCGGCCGACGGTTGCATCCAAAAATGTGCTCAATTCTTGCAAACAACGTAAAAAGGGAGTGACAAGGAAAAGTAAAGCTGATTTAGTGCCTGCCTCTAAAAATTCACAAGCTTCGGCTTCAGACGCAGAATCACGTGGAGTCGATGCAGAATCTTCAGGAGACAAACACGCTAAAAATGTTCCTGGTAGTTCTAAGTCAGGGGATTTTTCGGATAAATCTCAGTATACATCGCCACCTGTGTCAAAATTGTCTGGAACTTATGATTCAACCCCGCATACACTAATTCATGATTCACTGGTTCCTTCATCAGAATCAGCTAGGTTGAAGGTCACACTACCTGATTCCCTTGTATCTAATTATAGTACCCTAGATGATTCTGTGCTATGCAAGGTGACGCCGGCTTCGAAGCGACGTGCGTCTGAACGGTCAACTGCAGCAATTTTAAAGTTTCAATCGCTTGGATTAGCGCGAGATTCACCCGAATCTGGATCTGAGTCCCTTGATGACGATCTGCCCGACTCTGCGCTTTGTGAGTTAACCGCGTCTGTGAGGCCGCCTAAGTGTAAAAGTCCAAAGCTGATAGTAACACCTGATAAACAATTAACTGAAAAATCGTCGGATCTCGTGATTGACCCTCCGTCTTTGAAGTCATCCAAGCCAAAAAACCATAAACAAACAGATCCTGCTTCCCAATTCCCGACTACAATTCCGGCGGATCATTTGAAGATACAAGAAACAACCAACGATTACATAGGAACTACAACGCGCCATCAAAAAGTCACCAGACCAGCCAATGCCAAACGTCCTGTTGACCACGACGCATCAGTGCACTCTTCGGCATCCTCATCGATTCAGTCTTCAGAAAGATCCACCGACGAGGTAGAAATAAAGCCATCTGCAGACGAACGCTATCACTGCCCCCAATGCAACAGATCTTTCGATCAAGTCGGGCACTTGAGAGAACATCTGGTGAGCCACGGTGGTTTCCGACCTTTTCAATGTAAAACATGCGAGAAAACCTTCACGAAAGCTGTCTATCTCAAAGCTCACAAAAGAGTTCACAGCGGAGAGAAACCTTTTCCGTGTCTAATTTGTAATAAACAGTTCGCGAAAAGCAGCAACCTTAAAAGGCACCTACGCACCCATGACACGTCAAAAGAATTCCAATGTCCTCATTGCTCAAAAGCGTACTCTGGCAGTTCTATGTTTAAAAGACATATTCTTACGCATGATGAGAAAAAACGTTATGTGTGTGAAACTTGTTCAAAAGCTTTTGTACGAAGTAGCCACTATTATGTACACATTCGAACACATAGCGGTGTGAGGCCTTATACATGTTGGACGTGTAACAGAAGTTTTAACGTTAAAAGTCAACTAAATAGGCATAGCCGCGTTCACACCGGTATAAGGCCATATGCGTGTAAAGTCTGCGCTAAATGTTTCACAGACGGTAGCCAGCTTTCCAGGCATGCCAGAATCCACACGGGAGAGAGACCTTACGAGTGTCGACTATGTAAGAAACGTTATATTTACTCCTCAAATTTGCAAAGGCATTTGGTCCAGCACAGTGGTAAACGGTCTTTTATTTGTAGTTTATGTGATAAAGGGTTTTTTGACGCTCTCGCTTTGAGGAGACATCTCGCCGCTGTACATGACAGAAAaggaatttga
Protein Sequence: MESADLSLFEASKTNLEELLTSVQPSDAHCVGNGRSSLEMDPFLNPSNLQLQRAKEWALKYMSGCCSSAGDTVPAEEEINSTEITVDVSGAGMVNDEDLSDCNDNNSLENQKTIVRPMVIIDVRDQNRAIKNTQQGTGEDVESDASTIGELPNSIEHNLSETRRAVVEAILVNKARNQNSPLKDTQQVTVEIVQAQVPTIEQWQHKDKERNSPGNRKPVVEPIASVDDRHHKSLIKNTQLVTGEDVQSELTRPVDERLNNNEQNSPENRVVEPTVDLDIYRRNCPIKTTQAREKVQPAVQTVEEPPCNNKLYSQNRKSALEISSRPSCGKNYAGKMYECPMCCEGFIENVELKKHLRTHKESKFTCEVPDCGEQFQDASTLELHIATHKHKAPYSCKICGNLYSRQGCLQTHMLLVHQPLCQPCNKRFNSYLEYMFHLENEHQPNKCEHCRPTVASKNVLNSCKQRKKGVTRKSKADLVPASKNSQASASDAESRGVDAESSGDKHAKNVPGSSKSGDFSDKSQYTSPPVSKLSGTYDSTPHTLIHDSLVPSSESARLKVTLPDSLVSNYSTLDDSVLCKVTPASKRRASERSTAAILKFQSLGLARDSPESGSESLDDDLPDSALCELTASVRPPKCKSPKLIVTPDKQLTEKSSDLVIDPPSLKSSKPKNHKQTDPASQFPTTIPADHLKIQETTNDYIGTTTRHQKVTRPANAKRPVDHDASVHSSASSSIQSSERSTDEVEIKPSADERYHCPQCNRSFDQVGHLREHLVSHGGFRPFQCKTCEKTFTKAVYLKAHKRVHSGEKPFPCLICNKQFAKSSNLKRHLRTHDTSKEFQCPHCSKAYSGSSMFKRHILTHDEKKRYVCETCSKAFVRSSHYYVHIRTHSGVRPYTCWTCNRSFNVKSQLNRHSRVHTGIRPYACKVCAKCFTDGSQLSRHARIHTGERPYECRLCKKRYIYSSNLQRHLVQHSGKRSFICSLCDKGFFDALALRRHLAAVHDRKGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -