Pgib014497.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- Znf335
- Assembly
- GCA_963971405.1
- Location
- OZ020488.1:33023561-33027681[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.031 2.1 9.5 0.5 1 23 108 130 108 130 0.98 2 22 0.0017 0.11 13.5 0.2 1 23 137 159 137 159 0.97 3 22 0.00031 0.021 15.8 1.1 1 23 165 188 165 188 0.95 4 22 2e-05 0.0013 19.5 1.0 2 23 201 222 200 222 0.94 5 22 0.00025 0.017 16.1 0.3 1 23 228 251 228 251 0.94 6 22 0.087 5.7 8.1 2.8 1 23 257 279 257 279 0.96 7 22 0.0069 0.46 11.5 1.8 1 23 285 307 285 307 0.94 8 22 2.7e-05 0.0018 19.1 1.0 1 23 313 336 313 336 0.95 9 22 0.00014 0.0091 16.9 0.1 1 21 345 365 345 369 0.90 10 22 0.12 7.9 7.6 2.9 5 23 377 395 375 395 0.96 11 22 0.00014 0.009 16.9 0.4 3 23 403 423 401 423 0.96 12 22 0.044 2.9 9.0 3.6 1 23 433 455 433 459 0.86 13 22 0.0098 0.65 11.1 2.7 1 23 478 500 478 500 0.95 14 22 0.0031 0.2 12.6 0.8 1 23 514 537 514 537 0.97 15 22 0.094 6.2 8.0 3.3 2 23 571 592 570 592 0.96 16 22 0.93 62 4.8 0.1 2 23 613 634 612 634 0.94 17 22 6.8e-05 0.0045 17.9 3.9 1 23 639 662 639 662 0.98 18 22 0.00045 0.03 15.3 0.6 1 23 669 692 669 692 0.95 19 22 0.26 17 6.6 0.2 2 23 699 719 698 719 0.95 20 22 0.00021 0.014 16.3 1.0 1 23 725 747 725 747 0.97 21 22 7.3e-07 4.8e-05 24.1 0.9 3 23 755 775 753 775 0.98 22 22 0.016 1.1 10.4 2.1 1 20 781 800 781 805 0.92
Sequence Information
- Coding Sequence
- ATGGATGAGTCGGCAGAAAACATCGTTGGGGACTACCAGTGCGGCTTCAGACGCAACCGCTCTTCTGCCGACCAAATATTTAGCATCCTCCAAGTCTTTCAGAAGTGCTGGGAATACGACATACCAGTACACCAACTCTGTGTCGATCACAGGAAAGCGTGTGACAGAGTCAAAAGGGGGTTCCTATACGAAACTCTCAAAGAGATCAAGAAGCGTCAAGAGAAGTATCTAGCCGCTTATTGTTCTGTTTGCCACGAAAATTTCTTGGACGTACGCATTTTAAGTGATCATGTGGCGACGGAGCATAATGATCTTATACAATTCTACTGTGCGGACTGTCCTTGCCTCTTCATCGATGAAAGTGTATTCAACGCCCATGTGAAATCTCATAATCGTCGCGAACCAAAGTTCATGTGTCAAATTTGCCCAgcgaaattttttaagaattcgTTACTTGTTCAGCATGCAAATATCCATTCCGGTTCAAAACCTTTCAAGTGTGAACAGTGCGACAAAAGCTACCCGCTCAAGATGTCACTAACCAAACACAAGGCCATCAAACATAATCCTGACTACAAGCCTCGGAAACCCACTCCAAAACAGTGCGATGAGTGTGGGAAACAGTTTACAAACTCGAGCTATTTTAAGACCCACGTGGATGCACATTTGGGGTTAAAGCCGTTTTCTTGTGACGACTGTGGTAAAGCCCTCAGCAGTAAACAAACCCTGTTTGAGCATGTTAACGCCTTCCATACCGGAAATAGGCCACACAAGTGCGTTGTATGTAAAAAATCCTTTGTAACCATGAAGATTTTGAGGCTACACTCAAAAATGCATTCGACTCAGAAGCCTTTTGTGTGCATCGTATGTAATAAAAGCTATGCCCAAAAAAATGCGTTCCAAATTCATACCAGACATCACTTGGGGCAACGTCCATTCGCATGCGGTTACTGTGAGAAACGCTTCGTTTCAATCTCTCATTTAAATCGCCATGAACGCCTAGGTCACGTTGGGAAGGAGCTCAGCAAGAGTTATCCCTGTGAGAACTGCGGCGAAGTTTTTCCATCGAAACAGACACTTAGGGCTCATGCTGAAAGTGAAAACCACGGTCTCGAATTGTTTACTTGCCACTGTGGACGCAGTTATAATgagaagaaaaaatatattagaCATCTTAAAGCTCACAGTAGAAAAGAGTCACTGTTCTGTGATGCTTGCGATAAAGTGCTATCATCGAAAGCATCTCTTAAGAAACATTATCGCGTTCATACGACATCGGAAACCCCCTCAAAGATATATCCTTGTCGAATTTGTGGAAAAGTCTTCCTACGACTGTTTGCTCGCTCCGGTCACATGCGAACCCACACTAAACGacacaagaaattaaaaaatacgttCACCGTTATCAAGGATGGTTCTCTACATGTGAGCTACTTATGTAAATTTTGTGACTTAAAATTTGACAGTATATCGCATATGAAAGCGCATACAAAGGAGCACATAGTCCAATCAAATGAGCCAATGCCCCCTCAATCCCTTTTTACTTGCGATAAGTGTGATGAGAAGTTTAATGACAATTTGGAGGCGGTGCATCACGAAAGAACGGCACACAATAATTTGTATAGGAAATGCTGTCACTGTGGAGAATTGCACGCAGAGTCGGAAATGAAGCGCCATTTAAAATCCTGCAGAAAGTATCCAGAACTGCTGCAGTGTGAGGTTTGTAAAAAAGAATATCGATGTAAAAAGTCGTTAATGATGCATCTGAAAGAGCACTTTGACGTTCCAATAACTAGTCGATATGTCCGTAAAAGACATAGGCGCCATACCAAGAAAGTGTGTGCTACTTGCTCATTTCAAGCAGAGTCAAGAGCTGAACTTGCTTCCCACATGCAACAGCATGGCGATCGCCCGTATCAGTGTTCCGTTTGTCCAAAATCTTATAAAAACAGCCATGGATTGCATTGGCATAGAAAAGTACGCCATGACCCGGCTCGATTAAAGTTTATGTGTGAATTTTGTGGAAAAACGTACCCATTCGATAGTCTCCTTACTCAGCATCTCAACTTGACCCATTCCGACGAAAAACGCAGTGTCTGTGACATATGCGGCAGAAACGTAAGTAAAACGTACTTGCCAGCACATCGGAAAACTCACTTAACAGAAAGAGCCTACCCGTGTTCTCTGTGTGGCCGCAATTTTTTGGATAAGCAGTATCTGAAGAGACACATGTTTATTCACACTGGCGAAAAGCCATTTGGTTGTGGGACGTGTGGGCGCAGCTTCAGACAGAGCAGCACCTTGACCGTCCATTTGAGGACACACACTGGGGACAGGCCTTACAAATGTGGCCTATGTGTGAACGCGTACAAGACAAGTCATAACTTGAAAAAGCATTTCGTGAGAACTGGCCATAAGATGGCTGCTGCTCAGATTTAA
- Protein Sequence
- MDESAENIVGDYQCGFRRNRSSADQIFSILQVFQKCWEYDIPVHQLCVDHRKACDRVKRGFLYETLKEIKKRQEKYLAAYCSVCHENFLDVRILSDHVATEHNDLIQFYCADCPCLFIDESVFNAHVKSHNRREPKFMCQICPAKFFKNSLLVQHANIHSGSKPFKCEQCDKSYPLKMSLTKHKAIKHNPDYKPRKPTPKQCDECGKQFTNSSYFKTHVDAHLGLKPFSCDDCGKALSSKQTLFEHVNAFHTGNRPHKCVVCKKSFVTMKILRLHSKMHSTQKPFVCIVCNKSYAQKNAFQIHTRHHLGQRPFACGYCEKRFVSISHLNRHERLGHVGKELSKSYPCENCGEVFPSKQTLRAHAESENHGLELFTCHCGRSYNEKKKYIRHLKAHSRKESLFCDACDKVLSSKASLKKHYRVHTTSETPSKIYPCRICGKVFLRLFARSGHMRTHTKRHKKLKNTFTVIKDGSLHVSYLCKFCDLKFDSISHMKAHTKEHIVQSNEPMPPQSLFTCDKCDEKFNDNLEAVHHERTAHNNLYRKCCHCGELHAESEMKRHLKSCRKYPELLQCEVCKKEYRCKKSLMMHLKEHFDVPITSRYVRKRHRRHTKKVCATCSFQAESRAELASHMQQHGDRPYQCSVCPKSYKNSHGLHWHRKVRHDPARLKFMCEFCGKTYPFDSLLTQHLNLTHSDEKRSVCDICGRNVSKTYLPAHRKTHLTERAYPCSLCGRNFLDKQYLKRHMFIHTGEKPFGCGTCGRSFRQSSTLTVHLRTHTGDRPYKCGLCVNAYKTSHNLKKHFVRTGHKMAAAQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -