Basic Information

Insect: Psococerastis gibbosa
Gene Symbol: -
Assembly: GCA_963971405.1
Location: OZ020490.1:29977460-29989956[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.11 7 7.8 4.5 2 21 138 157 137 159 0.93

2 20 0.06 4 8.6 0.8 1 23 164 186 164 186 0.92

3 20 0.056 3.7 8.7 0.4 3 21 216 234 215 235 0.93

4 20 0.061 4 8.6 3.2 1 19 243 261 243 266 0.94

5 20 1.4 91 4.3 3.4 1 23 292 315 292 315 0.88

6 20 0.014 0.93 10.6 4.2 2 20 348 366 347 369 0.94

7 20 0.0052 0.34 11.9 0.4 1 23 374 396 374 396 0.98

8 20 0.0034 0.22 12.5 0.4 2 22 403 423 403 423 0.94

9 20 0.00088 0.058 14.4 3.7 1 23 431 454 431 454 0.91

10 20 0.025 1.7 9.8 0.6 2 20 475 493 475 495 0.93

11 20 1.2e-05 0.00077 20.3 6.1 1 23 727 749 727 749 0.98

12 20 6.1e-07 4.1e-05 24.3 0.8 1 23 755 777 755 777 0.99

13 20 5.5e-05 0.0037 18.1 1.6 1 23 783 805 783 805 0.98

14 20 0.00053 0.035 15.1 6.0 1 23 811 833 811 833 0.98

15 20 7.1e-07 4.7e-05 24.1 0.2 1 23 839 861 839 861 0.99

16 20 2.7e-05 0.0018 19.1 1.0 1 23 867 889 867 889 0.99

17 20 0.0021 0.14 13.2 1.5 1 23 895 918 895 918 0.96

18 20 0.00012 0.0082 17.0 1.7 1 23 924 947 924 947 0.97

19 20 0.00052 0.035 15.1 6.2 1 23 953 975 953 975 0.99

20 20 0.0018 0.12 13.4 0.3 1 23 981 1004 981 1004 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.11	7	7.8	4.5	2	21	138	157	137	159	0.93
2	20	0.06	4	8.6	0.8	1	23	164	186	164	186	0.92
3	20	0.056	3.7	8.7	0.4	3	21	216	234	215	235	0.93
4	20	0.061	4	8.6	3.2	1	19	243	261	243	266	0.94
5	20	1.4	91	4.3	3.4	1	23	292	315	292	315	0.88
6	20	0.014	0.93	10.6	4.2	2	20	348	366	347	369	0.94
7	20	0.0052	0.34	11.9	0.4	1	23	374	396	374	396	0.98
8	20	0.0034	0.22	12.5	0.4	2	22	403	423	403	423	0.94
9	20	0.00088	0.058	14.4	3.7	1	23	431	454	431	454	0.91
10	20	0.025	1.7	9.8	0.6	2	20	475	493	475	495	0.93
11	20	1.2e-05	0.00077	20.3	6.1	1	23	727	749	727	749	0.98
12	20	6.1e-07	4.1e-05	24.3	0.8	1	23	755	777	755	777	0.99
13	20	5.5e-05	0.0037	18.1	1.6	1	23	783	805	783	805	0.98
14	20	0.00053	0.035	15.1	6.0	1	23	811	833	811	833	0.98
15	20	7.1e-07	4.7e-05	24.1	0.2	1	23	839	861	839	861	0.99
16	20	2.7e-05	0.0018	19.1	1.0	1	23	867	889	867	889	0.99
17	20	0.0021	0.14	13.2	1.5	1	23	895	918	895	918	0.96
18	20	0.00012	0.0082	17.0	1.7	1	23	924	947	924	947	0.97
19	20	0.00052	0.035	15.1	6.2	1	23	953	975	953	975	0.99
20	20	0.0018	0.12	13.4	0.3	1	23	981	1004	981	1004	0.96

Sequence Information

Coding Sequence: ATGATGCTTGGGACCATGGAGACAATCGATGATCAACCCATCACTATTAAGGAGGAATCAGTGAGTAACAATGACGATGATGTAGCTGCGTTTATGTTTCCTGCAAAAATGGAGGAGAATCAATCGGCTGAGCACGTTGAAGtaaaaaaaggggaaatgGATGACGAAGACAATTCAAGCAGAGCTCAATCTGAGTTCGGAAACAGAAATACCGTCCAACCGCAAATTGCCAAGGGAACTGAAAGCTCCACTTGGAACGCTGTGATTCCTAACTATGACTGCGGAATAGAAACTGCTTCTGCTTCACCGAATTCGGAATCATCTTATGCCAAGAAATCGTCTATAGGGACCTCGGTGAAATTGGCATTGCAGACCGTCGTACCAAACCCCCCCAATGAAAATGATCCGTTATGTTGTACTGTTTGTCAGATGCGATTTACAAAGGAAGATGAATTGGCTAATCATCAAAAGTGCCATGAAACATGCGAATTCGTTTGTTTGCCCTGTTTGACTTCATTTTCTTCTCAGACGCTTTTTCGCCGACATTGGCAGGAACATTATAATGTATTGTGTCAAATTTGGTTTGGCCGACCCACTTTTGCCACTGAGCATGTGGGTAAACTTGAATGTGACGTGCAACAGTTTTGTGAAAGCTGTGGCGTGAACTTTAAAAGCCACGCGGAGTTGCTGACGCATTATCAAAGCACTTGTGCCGGTAGACGAAAGTTCACTTGTGACATGTGCAAACTAAGTTTTACAAATGAGAAAATGCTGTTTGAACACTGCACTGAAAAACATTCAATACCTGCACTGACCAAGACTCGAGCCCATAACGCTAATGGTATCACTATTCTTGAATGTAACACTCCAGTTTACAATTGTAGCATATGTAACTCACGATTTTCATCAATCAGTGACATTTTGGCGCACTGCCGACTATGTCATTCGCAGCCTACCGAACTGCTTGAAAATATAACACCCATTGTAACTGCTAGTGCGTCTCGAAATGTTTCCAGTGAACCCGTTTTGAAGATGATCATACAGTGTCCTATTTGTGAATTGAAATGTTCCTCGCATAGTGAACTTAGTAAACATATGATTTGCCACACAGAAAAGAAATTTCCTTGTCCACTCTGTGTGAAACGTTTTGATTCTCGCGATGAGCAGGTCACACATACACAGCGTCATATACGCCTTGCTAAACGTGTTTGTGAATATTGTAGACATCGGTTTTCTTCGCCAGCTGCTGTAAGGAAGCACATAAAAAAATGCCCATCGAGAAAATTAGTTTTCGTCTGTAAGTTCTGTCAAGAATCCTTCTCCTCGCAGTGCAATCTGATTAAGCATAATTTACAAAATCACCCCACTAAAAGCGATGTTTTGTTCTGTGAAAGTTGTGCCACTGTTCTTTCGCCGGAGCGTGTGTGTGAAGAGTGTACTGCAGTTTTTGAGTCAAATGCTGACTTATGTAAACATGCCTGTGGAAAATCTCCTAGTGCAGATAATTGTTTTGAATATGCTGTTCAGGTTAAAATCGAACCAATCGACGCTGATGAAACACTCAATCCCTCCTATACACACGCCAGCCAATCCGTAATGGGGtctgtaaaaattgaaattgtagaCGAAGCCAGAAGCTTGAAAATGGAAATTACCAATGAAAATACCGAAAATAATACTGCCGAACCTATCATGATTGAGACATGTGATAGCGGAGAGACTTTGCATTTGGAAAATGCTGATTTGCTTTACGATAATGTTTACTATTTTAAACGGGAAACTGCATCTACAGCAGGAAGGCTAATAATGCCTAAAAACGAGGAAACCGGTTTTACCCATAGAAATGATAAAGTTCAATTTGATTTACCTTTCAAAGAATGCACCGGCAATCAGAAAATATCAGATAGACTTCCCTTGCCAAAATCAGAGCAAACTGAAACAGATCACGACGAGGAGAAAATCAATGTAAAAGAAGAACTAAGTGAATACAGTGGACACGATGATAGTCAAATTATTGACATCGATTGTTCAGGGGTTGAGAAAGTGATCAAGACTGATTGTGGGACAGTACCGAATGGCGAAAGAACGTCATCAGCCTCGGATTTACAGCGCGGTATTAGCACTGTTACGGGAGGGGACAACGACACTAGAAGTAGTAAACAAGCCGTGCCCAAACAGTTTCAGTGCAAAATATGCTCAAAATGTTTCAACCACCGAGGCTCACTAAATAGACATGAGAGGATTCACACAGGGGAGAAACCTTATCAGTGTGTCGTTTGCTCCAAAAGTTTCAATAACAGCTCTGATTTAAAGGTCCATACAAGAATCCATACAGGCGAGAAACGTTACCAGTGTGAATTCTGTTCAAAACGATTCATTCAAAGTAGCGCGTTTCAAGCGCATAAAATAAAGCACACCGGGGAGAAAACATATCAGTGCGAAATATGCTCAAAATGTTTCAAATTCCAATGCTTACtagaaaaacataaaataatacacTCAGGAGTGAAGTCATACCAGTGCACGGTCTGCTCGAAAAGTTTTGCTCAAAATGGGGCCTTATTGAACCATATAAGAATCCATACgggggagaaaccttaccagtgtgaTATCTGTTCGAAACGTTTCATCCATACTGGCGCATTGCAAGCTCATAAAATAACGCACACCGGGGAGAAGTCATACAAGTGCCAAAGCTGTCCCCAACGCTACGCTCGAATGAAGGAGTTGCGGAGGCACACTACTAGAGTACATGCCAGAGAGAACCCTTACGAGTGTCGGATCTGTTTTAAAAAGAGCTTCCCTACAAATTCTCAGCTACAGTCGCATATTCGGAGACATGAAGGAGAGAAGCCATACCAGTGTCAGACCTGTTTAAAAAGTTACACTCAGAAATGTGATTTCCGTAACCATATTAAAACGCATACACGAGAGATGAGTTATCAGTGTGGCGTGTGTGATAAATATTTCTATGCGAAAACAAAGTTACGAGAGCACGTAGAAGTGGGCCACTGTTGA
Protein Sequence: MMLGTMETIDDQPITIKEESVSNNDDDVAAFMFPAKMEENQSAEHVEVKKGEMDDEDNSSRAQSEFGNRNTVQPQIAKGTESSTWNAVIPNYDCGIETASASPNSESSYAKKSSIGTSVKLALQTVVPNPPNENDPLCCTVCQMRFTKEDELANHQKCHETCEFVCLPCLTSFSSQTLFRRHWQEHYNVLCQIWFGRPTFATEHVGKLECDVQQFCESCGVNFKSHAELLTHYQSTCAGRRKFTCDMCKLSFTNEKMLFEHCTEKHSIPALTKTRAHNANGITILECNTPVYNCSICNSRFSSISDILAHCRLCHSQPTELLENITPIVTASASRNVSSEPVLKMIIQCPICELKCSSHSELSKHMICHTEKKFPCPLCVKRFDSRDEQVTHTQRHIRLAKRVCEYCRHRFSSPAAVRKHIKKCPSRKLVFVCKFCQESFSSQCNLIKHNLQNHPTKSDVLFCESCATVLSPERVCEECTAVFESNADLCKHACGKSPSADNCFEYAVQVKIEPIDADETLNPSYTHASQSVMGSVKIEIVDEARSLKMEITNENTENNTAEPIMIETCDSGETLHLENADLLYDNVYYFKRETASTAGRLIMPKNEETGFTHRNDKVQFDLPFKECTGNQKISDRLPLPKSEQTETDHDEEKINVKEELSEYSGHDDSQIIDIDCSGVEKVIKTDCGTVPNGERTSSASDLQRGISTVTGGDNDTRSSKQAVPKQFQCKICSKCFNHRGSLNRHERIHTGEKPYQCVVCSKSFNNSSDLKVHTRIHTGEKRYQCEFCSKRFIQSSAFQAHKIKHTGEKTYQCEICSKCFKFQCLLEKHKIIHSGVKSYQCTVCSKSFAQNGALLNHIRIHTGEKPYQCDICSKRFIHTGALQAHKITHTGEKSYKCQSCPQRYARMKELRRHTTRVHARENPYECRICFKKSFPTNSQLQSHIRRHEGEKPYQCQTCLKSYTQKCDFRNHIKTHTREMSYQCGVCDKYFYAKTKLREHVEVGHC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -