Pgib019834.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020490.1:30006931-30013737[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0029 0.19 12.7 1.1 1 23 164 187 164 187 0.96 2 15 0.0034 0.22 12.5 0.4 1 23 193 215 193 215 0.98 3 15 0.00012 0.008 17.1 0.3 1 23 221 243 221 243 0.98 4 15 1.7e-06 0.00011 22.9 1.6 1 23 250 272 250 272 0.96 5 15 0.0031 0.2 12.6 0.2 2 23 279 300 278 300 0.96 6 15 0.065 4.3 8.5 8.1 1 23 306 328 306 328 0.98 7 15 0.00084 0.056 14.4 0.1 1 23 334 357 334 357 0.93 8 15 0.0006 0.04 14.9 3.4 2 23 369 390 368 390 0.97 9 15 7.3e-05 0.0048 17.8 4.0 1 23 396 419 396 419 0.95 10 15 8.9e-05 0.0059 17.5 0.9 1 23 425 447 425 448 0.95 11 15 2.2 1.4e+02 3.7 3.5 3 23 463 483 461 483 0.96 12 15 0.0001 0.0069 17.3 0.5 1 23 489 511 489 511 0.95 13 15 4.1e-07 2.7e-05 24.8 2.6 1 23 517 539 517 539 0.99 14 15 1.1e-08 7.1e-07 29.8 0.4 1 23 545 567 545 567 0.99 15 15 1.2e-06 8e-05 23.4 3.5 3 23 575 595 573 595 0.97
Sequence Information
- Coding Sequence
- ATGGCCGAATACCTGGTGTCCATTCTGACTGCTACTCGAAAGTTGGAGGCCATGAAGAAACCTCTGGACGACGAATGTGTTGCTGTGCTGATGTTGAACGGCCTTCCCGAAGATTTCGAACCTTTTGTCGTGGGAATAGAAGACTCTGACGCTGTCGTGTCATCAGACAGTATTAAGACGAAGCTTCTGCTGGAATCGGACCGAGTACAGTGGAACTATggtttacatacaataaatcaAACTGTTGTTCGACCCAAAAGCATGAGAGGCAAAAGACGCGGAAGACCTGCAAGTGAACGGGTTAAGACACGGAAGAAAATAGGGCAAGGTGGAAAACCCAATAAAAAAAGGCACCTGGAAGaATTTGATGATGAAGGAAGTGAATCAGACGGCGGGCCCCTTTTGGATAGTCTTCACAGAATAGGGCCCTCGAGTGACGTCACAGGCCTAGTAGGTAACGCGGTAGATCCGTTGGACACGAGCCCGCCGTTTCAGTGCAACCTCTGCCAAGAACAGTTTGACAGCCGTTCCCTCGTATTTGATCATTTGAAGCAGAACCATAAGAACGAAACTCCGTTCAGCTGCCCGATATGTCGGAACCTTTTCAATGACCAGGCTCAAATGAAGGTGCACTACCTCTCGCACCGCTACGAAAAAGACTTCCCCTGCCCCGTCTGCCAAATCCGGCTCGCGACCAAAGGCAGCCTAGCCCACCATCTCAAAACCCACGACCGCGGCAACGAAACCCACGATTGCACCGAGTGCGGCAGGTCGTTCCAGCGGAGTGCCGACCTCAAGAGTCACATCAAGATGCACGCGCGGAAGGACGAGATGCGCTGCCGCGAGTGTGGCGACCGCTTCGAAGACAAGGACCTGCTCGAGTCGCATGTCGAACGTCATGAGAATGAAAAACGCCACGTCTGCCACTTTTGCGACAAGAGATTTAAGGCGACCGGCAGCCTAAAGTGCCATTTAAGGACTCACACGGGCGAGAAACCCTTTGCATGCGATAGGTGTCCAAAAAAGTTCCGAGTTAAGTACCAACTGGCCGGGCACTTGGTTGTTGCGCACGGTGACAATAGTCTTATCGATGAAAAAAGGCTAACTTGCCAGCACTGCTTCAAAGTTTGCGCAAGCATTAATAATCTACAAGCGCATTTACGATCACATGCTGTGGCTAGACACTATCAGTGTACTCAGTGTAACATGGGCTTCAAGCATAGCTCTAATTTAAAGGAGCACTTTATTAGGAAGCACACTAATGATTTCAATTTCGAGTGTGACATTTGTAAGAAGCGAACCAAGACGAAGGGGGCGCTAGTCTCTCACATAGGAATGCATCACGGGGTGAAGCGTAGTAGTGATGCGGCTAATGTGGGCTGTCTTTGTCCGATTTGCGGGAATCATATTAAGAATAAGCATAGGTTGCCGGCGCACCTCAAGGTGCACAGTCCGGAGCGGCCGTTTCTTTGTAATCAGTGCGGCCAGACGTTTAAGTATAAGGCGGTTTTAAAGGACCACCAGATAATTCATTCGAGTGAGAGGCCGTTCAAGTGCACGATGTGCGAGAAGGCGTATAAGCATAACAGTTTGTTGACGGCTCACATAAGGACGCATACGGGAGAGGCGCCGTATGTGTGTGAGACGTGCGGACGGGCGTTCAGGACACCGAAAAATTTGAAGGTTCATATACGTACTCACACGGGAGAGTCTCCGTACGGTTGCGCACTGTGTGGCAAGTGTTTTAAGAATCGGTCGAATTATACCTCGCATATGAAAACTCATAGGATTCCGCCTTGA
- Protein Sequence
- MAEYLVSILTATRKLEAMKKPLDDECVAVLMLNGLPEDFEPFVVGIEDSDAVVSSDSIKTKLLLESDRVQWNYGLHTINQTVVRPKSMRGKRRGRPASERVKTRKKIGQGGKPNKKRHLEEFDDEGSESDGGPLLDSLHRIGPSSDVTGLVGNAVDPLDTSPPFQCNLCQEQFDSRSLVFDHLKQNHKNETPFSCPICRNLFNDQAQMKVHYLSHRYEKDFPCPVCQIRLATKGSLAHHLKTHDRGNETHDCTECGRSFQRSADLKSHIKMHARKDEMRCRECGDRFEDKDLLESHVERHENEKRHVCHFCDKRFKATGSLKCHLRTHTGEKPFACDRCPKKFRVKYQLAGHLVVAHGDNSLIDEKRLTCQHCFKVCASINNLQAHLRSHAVARHYQCTQCNMGFKHSSNLKEHFIRKHTNDFNFECDICKKRTKTKGALVSHIGMHHGVKRSSDAANVGCLCPICGNHIKNKHRLPAHLKVHSPERPFLCNQCGQTFKYKAVLKDHQIIHSSERPFKCTMCEKAYKHNSLLTAHIRTHTGEAPYVCETCGRAFRTPKNLKVHIRTHTGESPYGCALCGKCFKNRSNYTSHMKTHRIPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -