Pgib019744.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Psococerastis gibbosa
Gene Symbol
-
Assembly
GCA_963971405.1
Location
OZ020490.1:29169998-29171545[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0001 0.0066 17.3 0.1 2 23 52 73 51 73 0.97
2 15 1.8e-05 0.0012 19.7 0.5 1 23 79 101 79 101 0.98
3 15 1.1e-06 7.4e-05 23.5 2.5 1 23 107 129 107 129 0.99
4 15 4.1e-06 0.00027 21.7 2.5 1 23 135 157 135 157 0.99
5 15 3.4e-05 0.0022 18.8 4.2 1 23 163 185 163 185 0.98
6 15 2.6e-06 0.00017 22.3 1.9 1 23 191 213 191 213 0.99
7 15 1.2e-06 7.7e-05 23.4 4.5 1 23 219 241 219 241 0.99
8 15 6.1e-06 0.0004 21.2 1.9 1 23 247 269 247 269 0.99
9 15 0.01 0.67 11.0 0.4 1 23 274 296 274 296 0.99
10 15 0.46 31 5.8 0.0 2 23 303 324 302 324 0.95
11 15 0.0014 0.09 13.8 1.2 1 23 330 352 330 352 0.99
12 15 0.057 3.8 8.6 0.4 1 23 358 380 358 380 0.95
13 15 0.00021 0.014 16.3 5.2 1 19 386 404 386 407 0.95
14 15 0.00023 0.015 16.2 1.5 1 23 444 466 444 466 0.99
15 15 0.018 1.2 10.2 3.6 1 22 472 493 472 493 0.96

Sequence Information

Coding Sequence
ATGAACGGAAACCAAGAAATGGCCGAAGATGAGCAACCGGGAGTCTCAACTTGTGAAAATCAAGTGAAGTTATTAGGCTTAGCTATGATGAGCGCTGAAGACTGCGACCCCGAAAATATATGCAGCGAAGTAACCAACGCTAACAAACAATTGACGTGCGTCATCTGTCTAAAAGGGTTCGCCACCAACGCAGCGTTGCAGagacatgcaaaaacacacaccGGGGAGAAGTCTTTCCAGTGCTTGGAATGCGGAAAATATTTCGTCGACGGCAGCGCGTTGCGGAAACACACGAAACTACACACCGGTGAGAAACCCTACCAGTGTCTAGTATGTGATAAATGTTTCGCTGAAAAAAGTGACTTAACCATGCATACAAGGACCCATACAGGGGAGAAACCTTTCCAGTGCACTGTCTGTTATAAGTATTTCTCTAAAAATAGCCTCTTACAGACGCATATCAATACACACACGGAAGACAAGCCGTTTCGATGTACTTACTGCCTTAAAAGCTACTGCAGCAACGGAGCTTTACGGAAACACACGCGAATACATTCGGGGCAGAAGCCGTTTAAGTGTAAAGTGTGTTCAAAGCGGTTTAATGAGACAAGTGACTTGAATATACATTTGCGGACACATACTGGGGAAAAGCCTTACCAGTGCCAAATATGTTCGAAATATTTCGCTAAAAGTAGCCACTTGCAAAGACACTTAAAAACGCATAGCGAAGAGAAGAGGTTCCAGTGTGCCGAGTGTTCGAAATACTTTTACAAAAGTGACAACTTGGAAAACCATTTGCGGAAGCATAGAGGGGAGAACTACCAATGTAGCGTTTGCTCGGAGTTCTGGccaaattttaatgatttgGTAAAGCACATGAAATCGCATATTGTAGAAAACCCTTTGCAGTGTCTAGTGTGTTTAGATGTTTTCCCCAGTACTGATGAATTAGTGATCCATGGGAAAACTCATATAGTAGAAAATCCTTATAAGTGTCAATTTTGTTCGAGTAGTTTCGCCACAGAGAAAGCATTTCGGGCTCATACAGCAACGCATGCTGCAGAAGACCCTTACTTGTGTCATCTATGTTCCATAGCTTTCGTCGATATTAATGCTTATATGCAGCATACAAAAGGACATGAAATGAAGAAATCGTACCAGTGTGAGGTCTGCGACAGATGTTTCTCCAGTAGCTTCTATTTACGGAGACATTGCCGGATGAATACTGTAGACAATCCTTATATGTGTAAAGTTGATCCGAATAGTTTGGTTGCTGCTGGAGGGGGAAGCTTGGAGGAGTATGTGACAGTGGCTGTAGTGGAGAGTCCTTATACGTGTCACGTGTGTCCATGTAGTTTTCTGTCCAGTGGAGCTTTGCTGGCGCATATTAAAACGCATCCTGGAGTGAAGCCGTACCAGTGTAAAGTGTGTTTGAACTGTTTCAACACGGTACGAGATTTGAATCATCATACACGATCATGTGGCGTTGTCAAACAGGAAACTGGTAAGTTTTTGTTCTGTTGTTTTAATTTGCTTAGGGTGGGTTAG
Protein Sequence
MNGNQEMAEDEQPGVSTCENQVKLLGLAMMSAEDCDPENICSEVTNANKQLTCVICLKGFATNAALQRHAKTHTGEKSFQCLECGKYFVDGSALRKHTKLHTGEKPYQCLVCDKCFAEKSDLTMHTRTHTGEKPFQCTVCYKYFSKNSLLQTHINTHTEDKPFRCTYCLKSYCSNGALRKHTRIHSGQKPFKCKVCSKRFNETSDLNIHLRTHTGEKPYQCQICSKYFAKSSHLQRHLKTHSEEKRFQCAECSKYFYKSDNLENHLRKHRGENYQCSVCSEFWPNFNDLVKHMKSHIVENPLQCLVCLDVFPSTDELVIHGKTHIVENPYKCQFCSSSFATEKAFRAHTATHAAEDPYLCHLCSIAFVDINAYMQHTKGHEMKKSYQCEVCDRCFSSSFYLRRHCRMNTVDNPYMCKVDPNSLVAAGGGSLEEYVTVAVVESPYTCHVCPCSFLSSGALLAHIKTHPGVKPYQCKVCLNCFNTVRDLNHHTRSCGVVKQETGKFLFCCFNLLRVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-