Pgib014496.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- Znf711
- Assembly
- GCA_963971405.1
- Location
- OZ020488.1:33017207-33021985[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.3e-05 0.00085 20.1 0.2 3 23 105 125 103 125 0.97 2 21 0.052 3.4 8.8 0.5 1 23 131 153 131 153 0.98 3 21 2.7e-05 0.0018 19.1 2.4 2 23 161 182 160 182 0.96 4 21 0.43 29 5.9 1.2 2 23 189 210 188 210 0.96 5 21 2.1e-05 0.0014 19.4 3.0 1 23 216 238 216 238 0.98 6 21 0.0011 0.071 14.1 0.2 1 23 244 267 244 267 0.94 7 21 2.9 1.9e+02 3.3 0.1 2 20 278 297 277 300 0.63 8 21 1.5e-06 9.7e-05 23.1 2.1 1 23 306 328 306 328 0.98 9 21 0.00024 0.016 16.1 0.3 1 23 334 358 334 358 0.99 10 21 0.00021 0.014 16.3 4.1 1 21 364 384 364 386 0.95 11 21 0.17 11 7.1 0.2 2 23 400 421 399 421 0.97 12 21 0.00037 0.024 15.6 0.9 1 23 451 473 451 473 0.98 13 21 0.0079 0.52 11.4 0.0 1 23 479 503 479 503 0.97 14 21 4.1e-05 0.0027 18.5 0.4 1 23 508 530 508 530 0.93 15 21 0.036 2.4 9.3 1.1 2 23 537 558 536 558 0.96 16 21 0.0033 0.22 12.5 0.9 1 23 564 586 564 586 0.98 17 21 0.057 3.8 8.7 0.3 1 23 592 615 592 615 0.94 18 21 0.033 2.2 9.4 0.2 2 23 622 644 621 644 0.81 19 21 0.038 2.5 9.2 0.5 1 23 651 673 651 673 0.95 20 21 0.00028 0.019 15.9 1.2 1 23 679 702 679 702 0.98 21 21 0.064 4.3 8.5 0.3 2 20 707 725 706 727 0.85
Sequence Information
- Coding Sequence
- ATGAAAAATCCTAAACTTATCGAAGTCACAGGAGTAGTTGTGCATGTTTTTATGTTGGACCATGGAAGACTGAGTGTATGGATTCGCAGAGTAAAACGCTTGCGTAAAAAACGGGACATTGAAAGTCAGCTGTTGACTATTATTGAAGAAGCGTTAAACAAGCGATGTGGGCTGAACACCGAAGTTAGCGGCTCTCCCGAAGAAATTCTGCAGAAAAGGCAAAAAACAGTGGACAAAAGCGAGGAATTTACTATAGATGAAAGCAGAAGTGTAGTGAAGCGACAGAAACGGAAAAAGAGAAATGAGATAGCGTGCGAGTTTTGTGGTAAAATCTTTACCCGAAATGGAAATTACGTAGAACATAGACGTGTTCATACGGGGGAGAGACCTTATCAATGCTTAGTTTGCCTCGTACGGTTTGGATCTCACGCGGGGTTGAGCAGGCATAAATTGGTCCACCAAATTAATCCTACACTCCTGCCCTGCGAAACTTGCGGCAAAACGTTCAAACACCAAATACAGTTGAAATACCATAAGGAAACACACACCAATACTGAACCCCTGCAATGCGACTTATGTCCGTACACCTCCCTTTCAAGGCACTATTTAAACTTGCATAGAGCCACTCACTTGAACCGTGGCAGATTTGTATGTGAATTGTGCAATAGAGGTTTTAACTCGAGATCATGTCTTAAAGAACACATGAATAAACATACCGGAAATAAACCCTTCCTTTGTGACGTTTGTGGAAAGTCTTATCCGGCGAGGTACAGTTTAGCTGTCCATAAACAAATGAAGCACGATCCCAATTACAAACCACGTGGACGTGTACCTTGCCAGTACTGCGGGAAGATGGTTTTGAATAGGAAGCAGGATATTGTGAGACATAGAGGTATTCACACGGGGGAAAAGGCATTCGTGTGCCATCTGTGTGGAAAACGTGTCACTAACAAGGAGTCTTTAAAAAGTCATATTCGGTCACATAGtggggagaaaccttaccagtgtgaCGTGACGGAATGTGAAGCGAGATTCGTTTCGAGGGGCCTCCTTCGAGTTCATAAAAGAACCCATACGGGAGAGAAACCTTATACTTGCGTTTTTTGCAATAAATCATTTACACAACGTTCGAGTTTGGTGGTTCATCAAAAATGCCACTCTGATCCCACTTCATCGATTGACGCTCCTAAGTCTACGAAGTGTGAATTTTGTAATGCGAAATTAATGACCGAAGCTGATCTCGCAACTCATCGGCAAATTCATACAGTCTCTGATGATGGCGTGACACGAGTCCTCAACATTCAAATTATCAATAATGCTGACGGCGACTACACAAAGCGGAGAAAACAACACACTTGCGAGTTTTGCTCGAAATCGTTTGCGTGGCCAAGTGCTCTTGAAGTTCATAAGAGGACCCATACAAAAGAGAAGCCGTATTCATGTAATGTAGTAGACTGTAACGCAGCGTTTGGATCTTCAACCGGATTATGGAAGCATAAGGCAGTTCACATGAGGAAAACATTCCCATGCACCGTGTGTGGCAGATCATTCAAACGCGCGATCCAACTGAGATATCACTCGGAATTGCATCGTGGAACTGACGTACTCTCATGCAATGAATGTTCCTACTCAACTGTATCTAGGAGGTGTCTGGTACTTCACATCGGTACTCATAGAAATAAACAGAAATTCGTGTGTGAGCTTTGTCAGAAAGGCTTCCATGCCAAGGTTTATTTACTGGAACATATCAACAAACATAGCGGGGAAAGGCCCTACACGTGTGACAACTGCCCGAAGAGCTACCTAGGTATGGCCAGCCTAGCGACCCACCGCCGTTTAAAGCATGGAGTTGAGTCCAGAGTAGAATGCGAAATTTGTGGGCGAATGGTTCGTAATCGGAAACAGGATTTGGAAAGACACGCACAAACTCATGCGACACAAGACCGAACACATGCTTGCCGCATTTGTGGAGTTGGACTTAAATCAGCAGCTTTGTTACACACCCATCGGCTAATTCACGCCCGgcaaaagccttacaagtgtaaccTGTGTCAggaaatatttgtgagtgaaaATCTTTTACGATCTCACAAGCGGTCCAAGCATCTTAAAGAGATGACTTGTGGAAACTGTGGGAAGCACTTTAAAAAGCAAACTCGTTGGATTGGACACTTGGCATCGTGCTGTGTTCATGATAAGACGGCTTTAGGGACGGGAAATTATTTTTCTGGGTTAGGGTCGAAAGTAGAACTTCAACCGTACGGAGAGAGCACTAGTATGGTGCAGCTGCATATTCCAGAGAATGGTGCTGAATTCGCTCTATTAAACTAA
- Protein Sequence
- MKNPKLIEVTGVVVHVFMLDHGRLSVWIRRVKRLRKKRDIESQLLTIIEEALNKRCGLNTEVSGSPEEILQKRQKTVDKSEEFTIDESRSVVKRQKRKKRNEIACEFCGKIFTRNGNYVEHRRVHTGERPYQCLVCLVRFGSHAGLSRHKLVHQINPTLLPCETCGKTFKHQIQLKYHKETHTNTEPLQCDLCPYTSLSRHYLNLHRATHLNRGRFVCELCNRGFNSRSCLKEHMNKHTGNKPFLCDVCGKSYPARYSLAVHKQMKHDPNYKPRGRVPCQYCGKMVLNRKQDIVRHRGIHTGEKAFVCHLCGKRVTNKESLKSHIRSHSGEKPYQCDVTECEARFVSRGLLRVHKRTHTGEKPYTCVFCNKSFTQRSSLVVHQKCHSDPTSSIDAPKSTKCEFCNAKLMTEADLATHRQIHTVSDDGVTRVLNIQIINNADGDYTKRRKQHTCEFCSKSFAWPSALEVHKRTHTKEKPYSCNVVDCNAAFGSSTGLWKHKAVHMRKTFPCTVCGRSFKRAIQLRYHSELHRGTDVLSCNECSYSTVSRRCLVLHIGTHRNKQKFVCELCQKGFHAKVYLLEHINKHSGERPYTCDNCPKSYLGMASLATHRRLKHGVESRVECEICGRMVRNRKQDLERHAQTHATQDRTHACRICGVGLKSAALLHTHRLIHARQKPYKCNLCQEIFVSENLLRSHKRSKHLKEMTCGNCGKHFKKQTRWIGHLASCCVHDKTALGTGNYFSGLGSKVELQPYGESTSMVQLHIPENGAEFALLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -