Pgib019788.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020490.1:29483166-29498192[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.42 28 5.9 7.0 1 23 103 125 103 125 0.91 2 17 1.3e-05 0.00086 20.1 2.9 1 23 131 153 131 153 0.98 3 17 0.00071 0.047 14.7 4.9 1 23 159 181 159 181 0.99 4 17 0.00016 0.01 16.7 1.1 1 23 196 218 196 218 0.99 5 17 0.0011 0.075 14.0 1.9 2 23 225 246 224 246 0.96 6 17 0.0001 0.0068 17.3 5.5 1 23 252 274 252 274 0.98 7 17 4.6e-06 0.00031 21.5 2.5 1 23 289 311 289 311 0.98 8 17 0.00011 0.0071 17.2 1.2 1 23 317 339 317 339 0.98 9 17 1.1e-05 0.00072 20.4 0.2 1 23 345 367 345 367 0.99 10 17 0.00036 0.024 15.6 1.3 1 23 373 395 373 395 0.95 11 17 2.4e-05 0.0016 19.3 2.8 1 21 401 421 401 423 0.95 12 17 0.00014 0.0092 16.9 5.5 2 23 492 513 491 513 0.96 13 17 6.5e-06 0.00043 21.1 1.2 1 23 519 541 519 541 0.99 14 17 0.047 3.1 8.9 0.2 1 23 547 570 547 570 0.84 15 17 8.3e-05 0.0055 17.6 1.8 1 23 576 598 576 598 0.99 16 17 1.3e-06 8.8e-05 23.2 3.3 1 23 612 634 612 634 0.99 17 17 0.0038 0.25 12.4 0.1 1 23 640 662 640 662 0.98
Sequence Information
- Coding Sequence
- ATGCTTATGACAAAtcttatggaaggaacatTGATCCCGAGAAACATCTGTTATGTATTGAGAGAAGATGATGATTCTTTTACGGAAGTCCTGGGAGGATGGGAGAGCAGTTCGAGGTGCACTGAAAACCAGAACGTAGAAGTGCGGATAGGCCTGGGTCGAACCCTGGAAATTAAGCAAGATCCCATCATTAAGTGTGAAAGAGTGTCCGAAGACGAAGGGACTGAATCTACCGATCACAAGCTCGGTTTCAATAGCACTGAAGACTTTGAGGTTTCCCATCAACTCCACACCACTGAGACACCTTTCAAATGTTGCATCTGCTCGAAATTTTTCAAATCTTCGCGTCTTTTGAGGTGTCATGGAATTTCACATTCGGAAGCGAGACCCCATCAATGTGATACGTGCTCAAAATCGTTTAAAACTACGACTGCATTGAAAGCCCATGCAAGAACTCAtacgggggaaaagccttacaagtgccAGATCTGTTCGTGTTCCTATCATTCCAGCGGTGGCTTAAGTAGACACATGAAAATGCATTtacctgctgctgctgctgataTGGAAAAATTAGAGAAGTCTTACCAGTGTGATGTATGCttgaaatttttcaaaacttcgCGTGACCTTGGAAATCATACAATAACACATACGGTAGAGAAGCCTTGTGTGTGTACAGTCTGTTCAAAAGGTTTCGCATACAATCATATCTTACAGGCTCATATGCGGATTCACACAGGGGAGAAGCCCTACCACTGCGAGAACTGTTCGAGGTCATATTGTACGAGTGGCGCTTTACGTAGACATTTGAAAACTCATCTACCTCCAGCTGCGAAAACGATCACGAATGACGATAGGCCTTACGAGTGTGTTATCTGCTTGAAATGCTTCAAAACTTCGAGTCAATTGAACAAACATGGGAGAGTACATACGGGGGAGAAACCATTCGAGTGTGAAACATGTTCTAAATCTTTCACTTGGAAAAATTTGCTCGAAACCCATATCAGGCGGCATACGGGAGAGAAGCCTTTTCAGTGTACAATGTGTCCGAGAAGTTTCGCTCAGGGTGGTACGTTACGAGCTCATACTAGGGTTCATATGGGGGAGAAACCTTACCTGTGTGCATTCTGTTCAAAGGGTTTCACTACGAGCACCCTTTTAAGGTCACATACTAAAGTTCATACCGGGGAGAAACCTTTCCAGTGTAAAATATGCTCAAAATCTTTCGCTAGAAGTGGTGAGTTACGGGTGCACACAAGATGTCACACCGGAGAGAGGCCTCATTTGTGTCAGAAAGTAAGCACGAAACCATTATTAAGTGTGAAATCGTCTCAGAAGGCGATGAGTCATCACACGAGCATGACTTTAATTCGCGGGAGCGAAATGATGATCCATCTGAGGAGCATAGCGTCGGTTCCAAAAGTTTCAATAGCATTGAAGACTGCGCTTTTGCAACAACTTATGCCTTGTCAGTGTAGCATCTGCTCGAAATGTTTCAAATCTTCGGGGTTATTGAGGAGTCATGGAAGGTCGCATTCCGAAGTGAGACCCTATCAATGTGATACGTGCTCAGAATCGTTTAAAACTATGACTGCATTGAAAGCCCATACAAGAACACATACTGGGGAGAAACCGTTTGTGTGTACAGTCTGTTCAAAAGGATTCGCTTATGACAGTGATGTTTTACAGGCACATATTAGGATCCACactggggagaaaccttaccagtgccTGACCTGTTCCAAGTCCTATTGTGCCAGTGGCGGCTTACGCGCCCATATGAAAACGCATTTACCGTCGTCTATGAAAATGCTCAAAGTAGAAACACCTTACCAGTGCGATATCTGTTTGAAATGTTTCAAAACTTCGGGTGAACTGAAGAAACATACAAGAATACACACGGGTGAAAAGCCGTATGAGTGTCGATACTGTTCCAAGGGTTTCGCTGCATCTGGGGATTTACAGCCCCATACGAGGATACACACGGGGGAGAAACCTTTTCTGTGCCGGCTCTGTTCCAAGTGTTTTATTATAAGACACAAGGAAGAATCAGTAATTAAATGCGAAGTAGTTATTGAAAGTGAAGAAGATAGGCCTATATCCGCAGAAGCCCTGACGTATAATGCCGTCTGTGATACAGTTAAGATAAAAGATGTAAAAGTACAACCAAAAGCTGTGAAAAAGCATAGAGACATATACGAATCCATACGGGAGAGAATAAGCCTTACTCGTGTAAAGTCTGTGCGAAACCTTACACTGATAATAGCGCTTTGCTACGACACATCCGAACGCACACTGGGGAGAAGCCTTTGGTGGCTGCTCGAAACGTTTCTCCGGTAG
- Protein Sequence
- MLMTNLMEGTLIPRNICYVLREDDDSFTEVLGGWESSSRCTENQNVEVRIGLGRTLEIKQDPIIKCERVSEDEGTESTDHKLGFNSTEDFEVSHQLHTTETPFKCCICSKFFKSSRLLRCHGISHSEARPHQCDTCSKSFKTTTALKAHARTHTGEKPYKCQICSCSYHSSGGLSRHMKMHLPAAAADMEKLEKSYQCDVCLKFFKTSRDLGNHTITHTVEKPCVCTVCSKGFAYNHILQAHMRIHTGEKPYHCENCSRSYCTSGALRRHLKTHLPPAAKTITNDDRPYECVICLKCFKTSSQLNKHGRVHTGEKPFECETCSKSFTWKNLLETHIRRHTGEKPFQCTMCPRSFAQGGTLRAHTRVHMGEKPYLCAFCSKGFTTSTLLRSHTKVHTGEKPFQCKICSKSFARSGELRVHTRCHTGERPHLCQKVSTKPLLSVKSSQKAMSHHTSMTLIRGSEMMIHLRSIASVPKVSIALKTALLQQLMPCQCSICSKCFKSSGLLRSHGRSHSEVRPYQCDTCSESFKTMTALKAHTRTHTGEKPFVCTVCSKGFAYDSDVLQAHIRIHTGEKPYQCLTCSKSYCASGGLRAHMKTHLPSSMKMLKVETPYQCDICLKCFKTSGELKKHTRIHTGEKPYECRYCSKGFAASGDLQPHTRIHTGEKPFLCRLCSKCFIIRHKEESVIKCEVVIESEEDRPISAEALTYNAVCDTVKIKDVKVQPKAVKKHRDIYESIRERISLTRVKSVRNLTLIIALCYDTSERTLGRSLWWLLETFLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -