Basic Information

Insect: Psococerastis gibbosa
Gene Symbol: -
Assembly: GCA_963971405.1
Location: OZ020490.1:30042821-30050646[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00028 0.019 15.9 5.8 1 23 17 39 17 39 0.97

2 18 6e-05 0.004 18.0 0.9 1 23 45 67 45 67 0.99

3 18 2.9e-05 0.0019 19.0 1.4 3 23 75 95 73 95 0.98

4 18 0.00038 0.025 15.5 1.5 1 23 128 150 128 150 0.99

5 18 5.4e-05 0.0036 18.2 0.9 3 23 158 178 157 178 0.99

6 18 7.5e-07 5e-05 24.0 0.6 1 23 184 206 184 206 0.99

7 18 1.6e-05 0.001 19.9 3.1 1 23 212 234 212 234 0.98

8 18 0.0012 0.08 13.9 6.4 1 23 240 262 240 262 0.98

9 18 0.00013 0.0089 16.9 2.4 1 23 271 293 271 293 0.97

10 18 0.0065 0.43 11.6 0.4 1 23 347 369 347 369 0.98

11 18 1.1 70 4.7 0.5 1 21 375 395 375 398 0.78

12 18 9.5e-06 0.00063 20.5 3.0 3 23 417 437 416 437 0.96

13 18 3.8 2.5e+02 2.9 0.0 2 10 444 452 443 463 0.84

14 18 0.95 63 4.8 0.8 14 23 472 481 468 481 0.90

15 18 7.8e-07 5.1e-05 24.0 0.3 1 23 487 509 487 509 0.99

16 18 5e-05 0.0033 18.3 3.0 1 23 515 537 515 537 0.98

17 18 0.0028 0.19 12.8 5.9 1 23 543 565 543 565 0.98

18 18 1.5e-05 0.00099 19.9 0.8 1 23 571 593 571 593 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00028	0.019	15.9	5.8	1	23	17	39	17	39	0.97
2	18	6e-05	0.004	18.0	0.9	1	23	45	67	45	67	0.99
3	18	2.9e-05	0.0019	19.0	1.4	3	23	75	95	73	95	0.98
4	18	0.00038	0.025	15.5	1.5	1	23	128	150	128	150	0.99
5	18	5.4e-05	0.0036	18.2	0.9	3	23	158	178	157	178	0.99
6	18	7.5e-07	5e-05	24.0	0.6	1	23	184	206	184	206	0.99
7	18	1.6e-05	0.001	19.9	3.1	1	23	212	234	212	234	0.98
8	18	0.0012	0.08	13.9	6.4	1	23	240	262	240	262	0.98
9	18	0.00013	0.0089	16.9	2.4	1	23	271	293	271	293	0.97
10	18	0.0065	0.43	11.6	0.4	1	23	347	369	347	369	0.98
11	18	1.1	70	4.7	0.5	1	21	375	395	375	398	0.78
12	18	9.5e-06	0.00063	20.5	3.0	3	23	417	437	416	437	0.96
13	18	3.8	2.5e+02	2.9	0.0	2	10	444	452	443	463	0.84
14	18	0.95	63	4.8	0.8	14	23	472	481	468	481	0.90
15	18	7.8e-07	5.1e-05	24.0	0.3	1	23	487	509	487	509	0.99
16	18	5e-05	0.0033	18.3	3.0	1	23	515	537	515	537	0.98
17	18	0.0028	0.19	12.8	5.9	1	23	543	565	543	565	0.98
18	18	1.5e-05	0.00099	19.9	0.8	1	23	571	593	571	593	0.98

Sequence Information

Coding Sequence: ATGGGCGGCTTGAAAGCTCATACGAGATCGCATAACGGGGAGAAACCTTTCCAGTGCAAGGAATGCTCAAAATGCTTCGCCCATTATAGTGGTTTGAAGTCGCATGAGAAATTGCATACGGGTgagaagccttacaagtgtgaATTGTGTGAGAAATCTTTCGCAGATAGGCAAGTGATGAAGCAACATGTTAGAACGCACACTGGCGAGAGACCTTTCGGATGTCAGATTTGTACAAAGCGTTTTATCCAGCGTTATCAGCTGACTGTTCATACCAGAAGTCACATACATAAGAACTCACAAGAACATTCGGTGACTTCCCAAAGTTTTGATGCAACTGGGGACTTAAATACACATGCAAGACTAGATAAAGAAAAGCGTTACTACTGTCAGATTTGTTCAGTAGGTTTCCCTTATAATTGCGATTTGAAGGATCATATAAGAAGGCATACGAACGAGAGGCCTCATGGCTGTACAGTATGTGACAAACGTTTCTTTAATGCTACTAGTTTGCAGACACACTTACGATTGCATACTGGGGAGAAACCTTTCCAGTGTGAACTCTGTCCTCGGAGTTTCACTCAGTTGAGCGGCTTAAAAGCGCATACAAGATCACATAGCGGAGAGAAACCTTTCCAATGTAAAAAATGTCCTAAAAGTTTCGCCCATTACAGTGGTTTGAACTCGCATGAAAAATCTCACACTGGAGAGAAGCCTTACCAGTGTGATTGCTGTGGGAAGTGTTTCTCGTCCAAGCAGGTGTTTAGGGAGCACATAAGAACGCACGTAACAGAGAAGCCTCGTGTTTGGCACGTTTGTCAAATCTGTCCGAAGCAATTTACCGACCTTTGCCAGTTGACGGCCCATGCTAAATCTCATATTGGTGTGAAGCCTTACCGATGTGCAACAGAAGATGTCGTCGTTAAATGTGAAGTAAATTCGGAGGACGAAGACGTGTCTTCTGGACTCTGCTCCCAGCCCACTCATGTGATTGACGTAGAAAACAAACAATTCAAACACAGAACATGGCCGATGAAATTCGAGTGTATGGTATGTTCGAAGGTCTACCTCACTAGAAGAGACTTGGAGGATCATGAAAGAACGCACGTCGGAGAGAACCTTTACCTCTGCTCCACTTGTAACACGAGATTCGCCACACTGGACAGTGTTTGGTTTCACAAGAAATGGGCCCACCCTGAGCTCCCGAAGCGAAGACGCTGTGTTACGGGCTCTAAAAAAGACAACTTTTGCCATGTTTGTAACAAGCGTTTCACAAACAGCAGCAATTTGGCTAGGCACGCCACAATGCACACGCTCGACAACCCAAACAAATGTCCGGTCTGTTCAAAAGAGTTCCTGTCAATTGGTCCGTTGTTATCCCATGTGGCTATGCCAGCTTCAGGGAAGCCTTACCAcagCTTAAAGAAACACATGAGAATGCATACGGGAGAGAAGCCTTACCGTTGTGAACTCTGTCCTCGAAGTTTCACGCAAATGGCCGGTTTGAAAGCACATATGAGATCACATATTGGAGAGAAGCCTTTCCAGTGCAAGGAATGCACGAAAGTGTTCGCACACCACGGTGGTTTGAAGGCACATGAAAAGTCGCACACTGGTGAGAAGCCCTACCAATGTGAATGCTGTGGGAAGTGTTTCTCGGATAAGCAAGTAATGAAGCAGCATGTTAGAACACACACAGGCGAGAAGCCTTACTGTTGCCAGGTGTGTTCGCGGGGTTTTGCGCAGCGTGTTGCGTTGACGGCCCATATTAGAACTCATACCGGAGAGAAACCATACCATCACCACATCACTAATAAGCTGTGGCATTCCCTTTATCCACTACCACCAACTGATTACCAGAAGAAGATCTTGGACCTGCTGGACCCAACGACTTATAAAATGCTCAGCCGTGACCCCACATCAAGAATCCTGGCGAAAACAAAGAAACTGGTCAAAGATTCCACTTTACCAACCGAGGATAAGCGGAACCTGGTAAAATCAGAAGCATTACCACCCAGGCTGTATGGTCTCCCGAAAATCCATAAGCAGCATGTGCCACTACGTCCGATTGTGAGCGCGATAGGATCTCCTTCCTACGGCGTGGCAAAATACCTGACGAAGCTGCTGCAGACACATGTAGGAACCGGAGATTCTTTCATAGGAGACTCGGCGCATTTCATTGAAAAACTGAAGGACCTACACCTGGAACCCGATGACCTGCTCGTGAGTTTTGATGTCGTCTCACTCTTCACTATGGTACCAATCAAAGAAACTATGGAGCTTATAAAGGAGAAATTCACGGATGACGTCACGTCTTTGTTCCACCACGTTCTGACAACTACAGACTTTCAATGGAATTCAACCTTCTACGAACAACTGGATGGCGTCGCAATGGGGAGTCCCATTAGCCCGGTAGTTGCCAACTTCAACATGGAATCTTTTGAAAAAACGGCGTTAGACACAGCAGCCCAAATACCGAAATTTTGGTTCCGATACGTAGATGACACCTTTGTTGTTTGGAGTCATGGTCTGGAGAATCTGACGAAATTCCTGGATCATATCAACTCAATTCACCCGCGTATCCAGTTCACcatggaaaaagaaaacaataacccGTTGCCCTTCCTTGATGTTTTGGTGATGAAGAATAGAGACGGTTCATTGGGACATACAGTATACCGGAAACCGACCCATACGGATAGATACCTGAGCAAGAGTTCCAACCATCATCCGAGTTAG
Protein Sequence: MGGLKAHTRSHNGEKPFQCKECSKCFAHYSGLKSHEKLHTGEKPYKCELCEKSFADRQVMKQHVRTHTGERPFGCQICTKRFIQRYQLTVHTRSHIHKNSQEHSVTSQSFDATGDLNTHARLDKEKRYYCQICSVGFPYNCDLKDHIRRHTNERPHGCTVCDKRFFNATSLQTHLRLHTGEKPFQCELCPRSFTQLSGLKAHTRSHSGEKPFQCKKCPKSFAHYSGLNSHEKSHTGEKPYQCDCCGKCFSSKQVFREHIRTHVTEKPRVWHVCQICPKQFTDLCQLTAHAKSHIGVKPYRCATEDVVVKCEVNSEDEDVSSGLCSQPTHVIDVENKQFKHRTWPMKFECMVCSKVYLTRRDLEDHERTHVGENLYLCSTCNTRFATLDSVWFHKKWAHPELPKRRRCVTGSKKDNFCHVCNKRFTNSSNLARHATMHTLDNPNKCPVCSKEFLSIGPLLSHVAMPASGKPYHSLKKHMRMHTGEKPYRCELCPRSFTQMAGLKAHMRSHIGEKPFQCKECTKVFAHHGGLKAHEKSHTGEKPYQCECCGKCFSDKQVMKQHVRTHTGEKPYCCQVCSRGFAQRVALTAHIRTHTGEKPYHHHITNKLWHSLYPLPPTDYQKKILDLLDPTTYKMLSRDPTSRILAKTKKLVKDSTLPTEDKRNLVKSEALPPRLYGLPKIHKQHVPLRPIVSAIGSPSYGVAKYLTKLLQTHVGTGDSFIGDSAHFIEKLKDLHLEPDDLLVSFDVVSLFTMVPIKETMELIKEKFTDDVTSLFHHVLTTTDFQWNSTFYEQLDGVAMGSPISPVVANFNMESFEKTALDTAAQIPKFWFRYVDDTFVVWSHGLENLTKFLDHINSIHPRIQFTMEKENNNPLPFLDVLVMKNRDGSLGHTVYRKPTHTDRYLSKSSNHHPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -