Pgib014494.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020488.1:32988387-32991680[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.051 3.4 8.8 0.6 3 23 26 46 24 46 0.93 2 22 9.3 6.1e+02 1.7 0.0 3 23 58 78 57 78 0.91 3 22 0.00033 0.022 15.7 0.9 1 21 80 100 80 101 0.96 4 22 0.12 8.1 7.6 4.4 2 23 105 127 104 127 0.93 5 22 0.0053 0.35 11.9 5.1 1 23 137 159 137 159 0.97 6 22 0.0026 0.17 12.9 0.3 2 23 166 187 165 187 0.97 7 22 6e-05 0.004 18.0 2.1 1 23 193 215 193 215 0.98 8 22 0.0059 0.39 11.7 1.1 1 23 222 244 222 244 0.97 9 22 0.00012 0.0078 17.1 1.0 3 23 252 272 251 272 0.97 10 22 1.8e-05 0.0012 19.7 4.5 1 23 278 300 278 300 0.98 11 22 0.016 1 10.4 2.4 3 23 347 367 346 367 0.97 12 22 1.1e-05 0.0007 20.4 0.7 1 23 373 396 373 396 0.97 13 22 2.3e-05 0.0015 19.3 0.2 1 23 403 425 403 425 0.98 14 22 0.023 1.5 9.9 2.9 2 23 432 453 429 453 0.86 15 22 0.00041 0.027 15.4 0.2 1 23 461 484 461 484 0.92 16 22 0.0004 0.026 15.4 4.3 1 23 494 516 494 516 0.98 17 22 0.0079 0.52 11.4 5.7 1 23 522 544 522 544 0.97 18 22 1.3e-06 8.8e-05 23.2 2.3 1 23 550 572 550 572 0.99 19 22 0.00011 0.0072 17.2 1.2 1 23 578 600 578 600 0.97 20 22 0.00096 0.064 14.2 1.1 2 23 607 628 606 628 0.96 21 22 3.9e-06 0.00026 21.8 0.7 1 23 634 657 634 657 0.96 22 22 2.2 1.5e+02 3.6 4.2 2 23 668 690 667 690 0.79
Sequence Information
- Coding Sequence
- ATGGGTGTAGTCTTTTTCGCTGGTGGTGGAGACAGAGAGGAGAAAACTAGcGAACCAACTATTAATTCAATGGCGTGTCAAGTATGTTTTCGGCGTTACAGAACTCTCCCGGGATTGCAGAAGCATTCTTCTCAACATGATGCAACTGGAGGCTCTCTTGAGAAAATGTTATGTGAAGTGTGCGGTGCTATTGTAAATGCAGGAAAAACGTGGAGAAACCACATCCTGAAACATAAATTTCGGTGCGACATTTGTCAGCGACCATTTTGCAATCGTGCCAAGCTAGTAACGCACTTAAAGGGAAAGTCCCTAAAATGTGAAATGTGCAGAAAAACTTACCTTCATAAATATGATTTAAAAGCTCACGTTGTGAAATGTCATCCAGAGTCGTTATCAGCCCAACAGGTTCATCGTTGTACTGTTTGTTTTAAATGTTTTGTGTCAGCGAAAGTTCTTAAAACTCACGAACGGTTACATAACGTAGAAAATTTTCAATCTTGTCCAATTTGCCGTGCTAGATATCCTAGTAGACGGCGTTTAGAAAGACACCTGATAACCCATTCAGATCTTCGGCCACACACCTGCTCAATTTGTAGTAGAAGCTATAAGAGAAAGCAAGCTCTAGTAGAACATGCACGTACTCACAACGACACCAAAAATCACCATATTTGCAATTTATGTGGCTTTGTATCGAAGTCCTCTGCAAGTATTTCCAATCACCTTCGTCGACATAAGAAGGCATTCGCGGTGTTCTGTAGAACCTGTGGGAAAGGTTTTTATTCCAATTCAAAATTGAAAGATCACCTTTTGGTTCACTCAGAGGCGATGCCTTATTGTTGCTCACATTGCCCCAAAACTTTCCGTAAAAAGGAAGCTCTCAGAGTACATGTAAAGGTTCATTTCCCTGCTACGAAAACGACTAGAAACCGGAAAAGAAAACAAGTTGTCGTTAAGAAAGAATCTGTTGCTAGTGTCCAGGTTGAACCCTTCTCTGGCAACATTAAGGAGGATCAAGGAGGATTCAAAGATGAGAACATTTGTCACATCTGCGGTAAGCTGGAAAAAACCAAAAAGCTTTTGCGTCGCCACTTGATCAAGCACTCCGACATTCGTCCTTTCTCCTGTCCGGAATGTCCCAGGAAATTTAAGAGGCACTACGAGGTCAACGCGCATGTGCGGGTTGTGCACCAAGAGCAGAAAAAGGACTATGAATGCGAAATTTGCCAAAAGAAATTCGCTATTCCGTCGAAATTGGAAATTCATAAGCGGATTCACAGAAAAGAATACAAGTGCACATGCCCAACATGCGGCAGAGGGTTCTATTCTGATTATAAACTTAGGGAGCATGCGTTTTTTCATAAAGAACAAGGTGAAAAACCTTTCCAGTGTGAGGCGTGTGGTCGTTCTTACTCGTATAAATCTGATTATGTCGCGCATAGAGCTGCTAACCATCCCGAATTGTGTAATCCCGAAAAGGTTCATACCTGTTGCATATGTAGCAAAACATTTGCGAGTCAGAAAATGTTGTCTGCTCATGAAAACACCCACACTGGAAACAATCTTTTCCCATGTCAATTGTGTGATAAAGTATGTAAAACCAAAAAGTTGCTCAAGTGTCATATGATCAGGCATCAAAGTGAGAAACCATTTAAGTGTGAATTGTGTCAAAAGCAGTTTAAAAGGAGATTTGAGTTGACGGCCCATATGCTAACTCATGAAGATGGCAGTAAGCATATTTGCGAGCTATGCGGCTATACAACAGCTCGCAAGTCTACATTAGATATGCATATCAGACGACATAACAAAAATTATCAAGTCACATGTGAAGCTTGTGGTAAGGGGTTCTATTCCAAGTGCAAGCTCAAAGATCATCTTTTGGTCCATTCCGGTGAAAAAGCCTATCAATGCCAAATATGTGGAAGAAAATTTCCATACAAATGGAATCTTACGGCACACAATAAATCGATGCACCCGGATGGCGATGAGAAAATTAGGAATTGTACTTGTAGTTATTGTGGCGAAAAGTTTTCCTGTGGGAAAATATTAAGAAATCATATGAAGGCCAATCATCAGAGAGTTTATCCGCTGCCTTTAACGGACATGAAAGAAGCAACAAACTCCACTGGGCTAGCAATGCCAGTACACAAGATTTACTATCGCCCTACGCAGCTACTTAGCATTGATACTGTCTAA
- Protein Sequence
- MGVVFFAGGGDREEKTSEPTINSMACQVCFRRYRTLPGLQKHSSQHDATGGSLEKMLCEVCGAIVNAGKTWRNHILKHKFRCDICQRPFCNRAKLVTHLKGKSLKCEMCRKTYLHKYDLKAHVVKCHPESLSAQQVHRCTVCFKCFVSAKVLKTHERLHNVENFQSCPICRARYPSRRRLERHLITHSDLRPHTCSICSRSYKRKQALVEHARTHNDTKNHHICNLCGFVSKSSASISNHLRRHKKAFAVFCRTCGKGFYSNSKLKDHLLVHSEAMPYCCSHCPKTFRKKEALRVHVKVHFPATKTTRNRKRKQVVVKKESVASVQVEPFSGNIKEDQGGFKDENICHICGKLEKTKKLLRRHLIKHSDIRPFSCPECPRKFKRHYEVNAHVRVVHQEQKKDYECEICQKKFAIPSKLEIHKRIHRKEYKCTCPTCGRGFYSDYKLREHAFFHKEQGEKPFQCEACGRSYSYKSDYVAHRAANHPELCNPEKVHTCCICSKTFASQKMLSAHENTHTGNNLFPCQLCDKVCKTKKLLKCHMIRHQSEKPFKCELCQKQFKRRFELTAHMLTHEDGSKHICELCGYTTARKSTLDMHIRRHNKNYQVTCEACGKGFYSKCKLKDHLLVHSGEKAYQCQICGRKFPYKWNLTAHNKSMHPDGDEKIRNCTCSYCGEKFSCGKILRNHMKANHQRVYPLPLTDMKEATNSTGLAMPVHKIYYRPTQLLSIDTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -