Pgib019731.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Psococerastis gibbosa
Gene Symbol
-
Assembly
GCA_963971405.1
Location
OZ020490.1:29052236-29057358[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00028 0.019 15.9 2.4 1 23 62 84 62 84 0.99
2 17 1.1e-05 0.0007 20.4 2.4 1 23 90 112 90 112 0.99
3 17 0.00064 0.042 14.8 5.5 1 23 118 140 118 140 0.98
4 17 0.73 48 5.2 2.2 1 23 146 169 146 169 0.96
5 17 9.3e-05 0.0062 17.4 3.0 1 23 175 197 175 197 0.98
6 17 5.7e-05 0.0038 18.1 1.8 2 23 206 227 205 227 0.97
7 17 2.7e-06 0.00018 22.3 5.9 1 23 233 255 233 255 0.99
8 17 5.2e-06 0.00035 21.4 5.0 1 23 261 283 261 283 0.99
9 17 1.5e-05 0.00099 19.9 2.2 2 23 290 311 289 311 0.97
10 17 0.00016 0.011 16.7 4.0 1 23 317 339 317 339 0.97
11 17 4.4e-05 0.0029 18.4 3.0 1 23 345 368 345 368 0.94
12 17 0.00032 0.021 15.8 0.7 1 23 368 390 368 390 0.98
13 17 0.002 0.13 13.2 6.6 1 21 396 416 396 418 0.95
14 17 4.3e-06 0.00028 21.6 0.5 1 23 424 446 424 446 0.99
15 17 0.0076 0.5 11.4 8.8 1 23 452 474 452 474 0.98
16 17 2.4e-06 0.00016 22.4 1.0 1 23 480 502 480 502 0.99
17 17 3.7e-06 0.00024 21.8 1.5 1 23 508 530 508 530 0.98

Sequence Information

Coding Sequence
ATGAGTGAAATAATATCAGATGATGAAGAAGGTATTTCGTCAGGACAAGGCTTGACTTCTCATAACGgaGTTAATGTGACTGGAATAAAAGGTAAAATACAGTCAGATGTTGATGAGGTTAACTCAGGACCTCAAAGTTCTACTGGTGCAGTTCTGGAAAATAACACATCAAAGACTACAAAGTTCCAATGTGTAACTTGTTCAAAGTATTATACTACACGTCAAAGCTTAGTAGTACATAGAAGAACACATAGCGGGgagaagccttataagtgtagtGTCTGTTCAAAGAGCTTCGCTGGCCATAGCAACTTCGCTGCACATAAGCGAACACACACAGGGGAGAAGCCTCACCAGTGCCAGGTGTGCTTAAAAAGGTTCAGTGCCCGTACTCATTTAACTAAACATGCAAGAACTCATACAGGAGCTAAGAACTTTCAGTGTCCAGCCTGTTTGGGATATTTTGCAAATCGTTGCAGTCTAAAAGTCCATTATACGAGAAGGCATTCGGGAGAGAAGCCTTATGAGTGCGCTGTTTGTAAGAAATGTTTCTCATCCAGTAGTACCTTAAGCGGTCATAACAAAACGCATACGGGCTACAACTACAAGCATAGTCAGTGTCATGTGTGCTCAAAATTTTTCGCCGGAAACTCCGCGTTACGGAGGCATTCACGGGTGCACACGGCggaaaaaccttacaagtgCGAAATTTGTTCAAAATGCTTCGCGCAAAGCAGTCATTTACGATATCATACTAGAGTGCACACGGGAGAGAAGCCTTACCAGTGTGATGTCTGTAAAAAATGTTTCTATACTACTTCCGACTTACGGAGACATACAAAGATACACACTAGGGAGAAACCCCTAAAGTGTGAGATATGTTCGAAATGTTTCGCATTCAAACGTAATTTAGGGGCGCATATACGAAGACATATGAGGGAGAAGCCGTACCAGTGTGAGTTGTGTTCTGAATGCTTTACCACGCTAAATCAGCTACAGAAACATACTAGCTATCATACGGGAGAGAAACTTCACAAGTGTAAAGTGTGTGCGAAATGTTTCTCTAGCAGTGGTGATTTACAAAACCACATAACACACAGACACAAGTGTAAAGTGTGTGCGCAATTTTTCGCAGACGGCGGTGATTTACAAAGACACACTAAAACGCATATGGGGGAGAAGCCGTACCAGTGTGAGTTATGTTCTAAATGCTTTGCTACGCTGAATCAGCTACAGAAACATACTAAATGCCATACGGGAGAGAAACATTATAAGTGTAAAGTATGTGCAAAATTTTTCGCTAACGGTGGTGATTTACAAAGTCACATGAGAACACATACTGGGGAGAAGCCTTACCAGTGTGAGTTATGTTGTAAATGCTTTACTACGATGTATCAACTACAGAAACATACTAGATATCATACTGGTGAgaaaccttacaagtgtaaagtGTGTGCGAAAGGCTTCTCTGGCAGCGGTGATTTTCAAAGACACATGAGGAAGCATACAGGGGAGAAGCCTTACGAATGCTCAGTATGTTTAAAACGTTTCACTCGCAGTAGCTGGTTGAAGACTCATATAAGTAAGCATGAACAGGAATTATCTTCTAAAGgaGGTGACGACGTGATAATTAAATGCGAAATAGTCTCGGGTGATGAAGGAGAAGGGTTATCGTCAGAAGACTTGACTGCCTGCACGGATGTTAAGGAGGATGACATTGCGGGAATGGTATCTGTTGTCGTGAAGCAAGAAATAGAGGAATCAAACGAAGGCGTAGTATCCGTTGATGTGGAACAGGAGAGAGAGGAATCGGTTTTGTCGTTCAACTGTGGAATACCATCCTTTGATGTAAATACCATGGGGACAGTGGACTATTCAATGGATGACTCCAAACTCCAACATCGCAGAGAATCAGCCAGAGAACGTTCAAGACTATATCGTGAAAGGAAACGTATTAGAGCTTTGAAAACAGTTGACCATTCGACTAGTGGACGTGTATTGCTAGTATTAGTGCCCGTTGGTGTGAGGCAGGAAAGAGACGCAGTTACGTCATCGACCGGTGAAATAGTAGCTGTTGACAACCATACCATTGAGACACAAGTTGACCATTCGATCAGTGGACGTGTGTTAGTGCCCCTAGATGTCAAACAGGAAGAAGAGCAAGTGGTTACGTCTTCGACCAAAGGAAAAGTTGTCGATGACTATACCCGTTAG
Protein Sequence
MSEIISDDEEGISSGQGLTSHNGVNVTGIKGKIQSDVDEVNSGPQSSTGAVLENNTSKTTKFQCVTCSKYYTTRQSLVVHRRTHSGEKPYKCSVCSKSFAGHSNFAAHKRTHTGEKPHQCQVCLKRFSARTHLTKHARTHTGAKNFQCPACLGYFANRCSLKVHYTRRHSGEKPYECAVCKKCFSSSSTLSGHNKTHTGYNYKHSQCHVCSKFFAGNSALRRHSRVHTAEKPYKCEICSKCFAQSSHLRYHTRVHTGEKPYQCDVCKKCFYTTSDLRRHTKIHTREKPLKCEICSKCFAFKRNLGAHIRRHMREKPYQCELCSECFTTLNQLQKHTSYHTGEKLHKCKVCAKCFSSSGDLQNHITHRHKCKVCAQFFADGGDLQRHTKTHMGEKPYQCELCSKCFATLNQLQKHTKCHTGEKHYKCKVCAKFFANGGDLQSHMRTHTGEKPYQCELCCKCFTTMYQLQKHTRYHTGEKPYKCKVCAKGFSGSGDFQRHMRKHTGEKPYECSVCLKRFTRSSWLKTHISKHEQELSSKGGDDVIIKCEIVSGDEGEGLSSEDLTACTDVKEDDIAGMVSVVVKQEIEESNEGVVSVDVEQEREESVLSFNCGIPSFDVNTMGTVDYSMDDSKLQHRRESARERSRLYRERKRIRALKTVDHSTSGRVLLVLVPVGVRQERDAVTSSTGEIVAVDNHTIETQVDHSISGRVLVPLDVKQEEEQVVTSSTKGKVVDDYTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-