Pgib019800.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Psococerastis gibbosa
Gene Symbol
-
Assembly
GCA_963971405.1
Location
OZ020490.1:29572002-29604035[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 2.3e-06 0.00015 22.5 1.9 1 23 18 40 18 40 0.98
2 22 0.41 27 6.0 0.7 1 10 275 284 275 288 0.91
3 22 1.8 1.2e+02 3.9 0.9 5 23 497 515 496 515 0.95
4 22 0.0013 0.086 13.8 4.4 2 23 522 543 521 543 0.97
5 22 6.1e-05 0.004 18.0 8.8 1 23 549 571 549 571 0.99
6 22 1.1e-06 7.3e-05 23.5 1.3 2 23 578 599 577 599 0.97
7 22 0.0023 0.15 13.0 1.4 1 23 605 625 605 625 0.98
8 22 1.6e-08 1.1e-06 29.2 3.5 1 23 631 653 631 653 0.99
9 22 0.0019 0.13 13.3 5.6 1 23 659 681 659 681 0.98
10 22 4.2e-06 0.00028 21.7 1.3 1 23 687 709 687 709 0.97
11 22 0.001 0.067 14.2 0.6 1 18 715 732 715 732 0.96
12 22 0.18 12 7.1 0.1 5 23 837 855 836 855 0.95
13 22 2.7e-05 0.0018 19.1 5.2 1 23 861 883 861 883 0.98
14 22 0.00017 0.011 16.6 2.6 1 23 889 911 889 911 0.99
15 22 0.0048 0.32 12.0 3.9 1 23 917 939 917 939 0.99
16 22 8.9e-05 0.0059 17.5 2.5 1 23 1131 1153 1131 1153 0.98
17 22 0.00091 0.06 14.3 3.5 1 23 1159 1181 1159 1181 0.98
18 22 1.8e-05 0.0012 19.7 3.3 1 23 1295 1317 1295 1317 0.98
19 22 0.00065 0.043 14.8 2.0 2 23 1324 1345 1323 1345 0.97
20 22 0.0011 0.075 14.0 3.1 1 23 1351 1373 1351 1373 0.98
21 22 5.5e-06 0.00037 21.3 1.7 1 23 1379 1401 1379 1401 0.99
22 22 9.2e-05 0.0061 17.5 4.9 1 23 1407 1429 1407 1429 0.99

Sequence Information

Coding Sequence
ATGAATTGCCATCTTATAGAGCATATGAAAGTCCATACGGGGGAGAAGCCTCACAAGTGTTCTGTGTGTGGGAAAGGCTTCGCTTCAACGTCGGACGTTAAAAGGCACATGAAAACGCACACGGGCGAGAAGCCTCACGTGTGTGGGGAATGTGAACATAAGCATGAGCCCTCCGCGCATGAAGACGAAGATTACCTGGAAGCCAGGAAGGAGCTAACGGACAAGAACGTAACTAAAACCATGTACGATAGGAAGACATTAAAACCAGCATTGGCTAATGACGAAATTGTTAATCCCGAAGATAATGAAGATGTTAAGGTTGAAAATGAGGAAGATTACAACCAAACCGGGAAGGAGCAAACTGACAAGAACATGACTGAAACCGAAGATGAGAGGAAAACTTTGAAACCATCTCTTACTTCTGAAGTTCCTCATGCTGATGATCACGAAGATTTTAAAAGTAATGATTACAATGAAATTGGCAAGAAGAAAACTAGAAGGGACAATATTAATGTCGAGAACAAGAGGATGACATCGTTGAAGACTCATGAAGTTGTTAGTCCAGTAGATTTTGTTATCGATTATGAAGAATTTGACAGTGACCCTTCTATGGATGCGAATCCGgcagattttttaaaaacagaacTGGCTATTTTAGCACCAATCAATCAGGCCACATCTGCTGCAACCGTTTCATGGGATATCCACGTGACTATGGACGAAATGGTAAAAACAGTAGAAAGATACGAAGACTGTACTGATTGTTTCGGCACGGGCTGCGACATTAACGAACATTTAGAGTTTCATTCATTGGTGAAGTCTTACAAATGTACCACTTGTGGAAAGGGGTTCGAACCTGAAGATGCTTCCTCAGACTATGCTGGTTACAACCGATCAACCCGGAAACGGAAAACTAGGAAAGAAAGGGACAGCTCTGACGAATACTATAACCCTGAAGAAGATGAGGATGATCGTCATTGCGTGGACGGGAATCTACGTGCGACAGTCAGTACTCAAGGAATCACCTTAGCAAATACTATAAAAATGGAAATTCCCGAAGATATTGTCGATGTCGAGTGGCCCACGATGAAGACTCAACATGCTGCGACTATCAAATCTCATGGAACCACCTCAGCAAACACTATAAAAACGGAAAATCCCGAAGATATTGTCGATGCCGAGTGGCCCACGATAAAGACTGAACATGCTGCGACAGTCAGATCTCATGGAACCACCTTAGCAAGCACTATAAAAATGGAAAATCCCGATGATATTGTCGATGCCGAGTGGCCCACGATAAAGACTCAACATGCTGCTACAGTCAGCACTCAAGGAACCACCTCAGCAACCACTATAAAATCTGAAATTCCTGAAGATATTGTCGATGCCGAGTGGCCCACAATGAAGACTGAACATGCTGTTGGATTCGTACCTTGGGAAATACGTTCAACAATGGATAAAATGATAAGAACGCTGGAAAAATACGAAGATTGTCGGAAATGCTACGTGTCCGGCTACACTTTACATGATCATTTACTATTACACATACCAAAAAAGATCCTTCAGTGTAACTTTTGTTGTAAATCATTCGGTGACTATTCAAATCTTAAAAGACACCGTCGAATCCATACGGGGGAAATGCCTTATAAATGTACGCTTTGTACTAAATGTTATTGCACTAATACGGATCTGAAGAGACATCTAAGAACACACACCGGGGATTTGCCGTGTAAATGCGAGATTTGCGGCAAAGGGTTTGGTACTAATTCTCAGTTGCAAATACATTTAAGGTCTCATATTGGTTTGAAACCGCATCAGTGTAATATTTGCGGGAAATACTTTAATTCTGGACTTGCTGAGCATTTGCGGACCCATTCGGGGGTGAAACCTTATACTTGTTCCGTTTGCGGTAAAAGCTTCGCTCGTAACAGTCACTTGCAAAGACACACGAGAACGCATACTGGCGAGAAGCCTTTCCAGTGTACGCTCTGTTCGAAATTCTTTGTTTGTAATTCGGATCTGAGGAGACATATGAAGTATCATAGTGGTGAGAAGCCACACGAGTGTAGTGCGTGCGGGAAAATGTTTACGAGTAATCCTGACTTGCAGAGACATTTGAAAACGCATAGCGGAGTGAAACCTTACGAGTGTGAGGTTTGTAACAAGTTTTTTGCGCGGAAATCTGATCTTCAGAAACGCGGTGAAGCCGCCGCCTTGGCCGACGATGGCTCCGGCGCGAGGAATCAACCCAATAGGCGAAGTAAAACAGCGAGAAATGCGCAAACAGTACCACATGGTAGCCATGACTACAGTCCGCATCTGCAGCCCAATGACAACAACTCGCAGGATAACTTATTATCGTTGGGCAAAAGAGTGCGCAAGAAGAAAGAACTGCCAGACGACTTTGTCGAGGCGTTCCTCTCGCCTCCAACCATGGAACTAGATCCTCAAGGGCATATACAGCGAAGAGAACGTGCAAACGCGAAAAAAGCCCTCAAGGAATACCAAGAATGTAATGAGTGCTTTGGCACGGATAGTTCCCTTGTTGAACACATACTGTATCATTCCGATAAGAAACCCCACCAGTGTAATGTATGCGGGCAGTGCTTCAAGGGGAAAAATACCTTAAATGAGCATATGAGAAAGCACACTGGAGAAAAACCATACAGGTGCCAAACTTGCGGCCGAAGTTTCCGTCTTCATTCCGGACTTTACGACCACGCGCGCACCCATTTGGATGTAAAGCCGTACAAATGTACCACTTGTGGTAATCTTTACCGGAAAAAGATTTATCTTACGCGGCATTTCCGGACCCATACGGGGGAAAAACCGTTCATATGCACAATTTGCGGCCTGCTATCTCCTTCTCTTATAGACTGCGACGATTGCGACTTCGTACTCGAGGATTTCGACATGGACTCAGGTGATGGCAAGAGGAGACGGAGGAGGCGGAGAAGGGCGAAGAAACCCAAGACAGCTGACAATGGCGGCGAGGTACCAGCAGGAGTCAGCAGTACAGACAGCGCGGCTGCAGACAATTCCTCGCGCAACGGAAAACGGGGCTGCAAGCAGGAGTCACGTCCGGAATGCTTTGTAGAAGCTGTTTTAATGCCTCCTGAGCATATAAAAGAGGAGAATGGTTCTGGCAATAGACTGAACGAAGACTGGACCAACAGTGGCTCGTCATCAATCACTGGGAAAAGGGAGCGCAAGAAGAAAGCACTTCCAGACGGTTTTGTTGGAGCTTTTGTAATTCCCGCGGACAAAATGAAGGGTGAAGATGGCGCGGATATGGTCAAAAGACTGAGGGAATACGAAGACTGTGAGCAGTGTTCGGGCACGGATTATACACTTGATGAACATTTACTATATCACACTGAAACAAATTCACACCAGTGCTACATTTGTGGCATGGTTTTCGCGCAAAAACACCGCCTTACTTCGCATATCCGAGCACATATGGCGGAAAAACCACACAAATGTTCTCTATGTCCGCGAAGCTTCATTTCGAAAACTTCCCTGAATTTCCACATGCAAACCCATTCTGTTGATAAGCCGCACAACCGACGAAGGAGGAAGAGCGGTAATAAGGGAGATGGTGACCAAGACTATTACCCGACCGCAAATACCCGAGGTAATGTCGCCAATCCTCAGGGAAATTCCTCACGTAACGGAAAGTCAGAGACGAAGAAGGATTCGATCGCAGAAGACTTTGTTGAGGCTGTGCTAATGCCTCCGGGACACTTACAACAACAGCCCCAGCCGCAAGAAGACCGTGCAAACGTGGAAAAAACACTGAAAAAGTTCCAAGAATGCCGGGAATGCTATGGCACTGACTATACACTCGTCGAACACTTGTTGTACCACGCTGACAAGAAGCCACACCAGTGTAACGTCTGTGGCAAGAGCTTCAATCAAAAGCAGTCGCTTTCCGAGCATTATACAACGCATACGGGGGAAAAACCGAATCAATGCATGGTTTGCGGCCGGTGTTTCCGCGCTAAATCTGCCCTCTATGTCCATAAGCAGACACATTCCGGAGAACGGCCTCATCAATGTCTTTTCTGCGGGAAACGCTTCCGGTTGAAAATGTATCTTACCGGGCATTTGAGGATCCATACGGGGGAAAAGCCGTATAAGTGTACTGTTTGTTTCCGAGGTTTCCGGGTGAAATCTCTGCTTAATTTGCATATGAGAACCCATACGGGGGAGAAACCGTTTAAATGTAGCATTTGTGACTCTAGTTTCAGTCAGAAGCATTGTCTTTTGGCCCATTTACGCATGCACACTGgtgagaaaccttaccagtgtacGTATTGTGACTGCGACGAGTCCGTCTTCAGATTGGACGAAGAACGCATTCGACGCAAAAGAATCAAGAAAAACGTGGAAAAGGAAGCAAAATCAAATATTGTCATAGATGGTGACCAACACATAAACACTATTACAGTCCCAGATGATGCATTAAGAAACGATAAAATGTTACATGAAAAGAAATCAATCCCACAAGATTTTGTAGAAGccatattaacacccccaaaatcgACAACAGATCCTATTGGATACGTGCAACTGGAAGAACGTGTAACCCTGGATAAATCACCTGCGAACCCCGACTGCAACGACTGTTTTGACGATTCCGAGATAAGTCTGCCCTTAATGTGCACACGGGCGTGTGACCATACATTTGTGACAATTGCGAGGCTAATTTCACGGAACTAG
Protein Sequence
MNCHLIEHMKVHTGEKPHKCSVCGKGFASTSDVKRHMKTHTGEKPHVCGECEHKHEPSAHEDEDYLEARKELTDKNVTKTMYDRKTLKPALANDEIVNPEDNEDVKVENEEDYNQTGKEQTDKNMTETEDERKTLKPSLTSEVPHADDHEDFKSNDYNEIGKKKTRRDNINVENKRMTSLKTHEVVSPVDFVIDYEEFDSDPSMDANPADFLKTELAILAPINQATSAATVSWDIHVTMDEMVKTVERYEDCTDCFGTGCDINEHLEFHSLVKSYKCTTCGKGFEPEDASSDYAGYNRSTRKRKTRKERDSSDEYYNPEEDEDDRHCVDGNLRATVSTQGITLANTIKMEIPEDIVDVEWPTMKTQHAATIKSHGTTSANTIKTENPEDIVDAEWPTIKTEHAATVRSHGTTLASTIKMENPDDIVDAEWPTIKTQHAATVSTQGTTSATTIKSEIPEDIVDAEWPTMKTEHAVGFVPWEIRSTMDKMIRTLEKYEDCRKCYVSGYTLHDHLLLHIPKKILQCNFCCKSFGDYSNLKRHRRIHTGEMPYKCTLCTKCYCTNTDLKRHLRTHTGDLPCKCEICGKGFGTNSQLQIHLRSHIGLKPHQCNICGKYFNSGLAEHLRTHSGVKPYTCSVCGKSFARNSHLQRHTRTHTGEKPFQCTLCSKFFVCNSDLRRHMKYHSGEKPHECSACGKMFTSNPDLQRHLKTHSGVKPYECEVCNKFFARKSDLQKRGEAAALADDGSGARNQPNRRSKTARNAQTVPHGSHDYSPHLQPNDNNSQDNLLSLGKRVRKKKELPDDFVEAFLSPPTMELDPQGHIQRRERANAKKALKEYQECNECFGTDSSLVEHILYHSDKKPHQCNVCGQCFKGKNTLNEHMRKHTGEKPYRCQTCGRSFRLHSGLYDHARTHLDVKPYKCTTCGNLYRKKIYLTRHFRTHTGEKPFICTICGLLSPSLIDCDDCDFVLEDFDMDSGDGKRRRRRRRRAKKPKTADNGGEVPAGVSSTDSAAADNSSRNGKRGCKQESRPECFVEAVLMPPEHIKEENGSGNRLNEDWTNSGSSSITGKRERKKKALPDGFVGAFVIPADKMKGEDGADMVKRLREYEDCEQCSGTDYTLDEHLLYHTETNSHQCYICGMVFAQKHRLTSHIRAHMAEKPHKCSLCPRSFISKTSLNFHMQTHSVDKPHNRRRRKSGNKGDGDQDYYPTANTRGNVANPQGNSSRNGKSETKKDSIAEDFVEAVLMPPGHLQQQPQPQEDRANVEKTLKKFQECRECYGTDYTLVEHLLYHADKKPHQCNVCGKSFNQKQSLSEHYTTHTGEKPNQCMVCGRCFRAKSALYVHKQTHSGERPHQCLFCGKRFRLKMYLTGHLRIHTGEKPYKCTVCFRGFRVKSLLNLHMRTHTGEKPFKCSICDSSFSQKHCLLAHLRMHTGEKPYQCTYCDCDESVFRLDEERIRRKRIKKNVEKEAKSNIVIDGDQHINTITVPDDALRNDKMLHEKKSIPQDFVEAILTPPKSTTDPIGYVQLEERVTLDKSPANPDCNDCFDDSEISLPLMCTRACDHTFVTIARLISRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-