Pgib019740.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020490.1:29149072-29152716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 0.0048 0.32 12.0 1.8 1 23 4 26 4 26 0.98 2 37 0.18 12 7.1 0.1 3 20 34 51 32 55 0.89 3 37 9.5 6.3e+02 1.7 0.0 4 22 56 74 56 74 0.91 4 37 5.3e-05 0.0035 18.2 2.3 1 23 102 124 102 124 0.99 5 37 9.7e-06 0.00064 20.5 0.2 1 23 130 153 130 153 0.95 6 37 0.0004 0.026 15.5 0.1 1 19 165 183 165 185 0.95 7 37 8.4e-05 0.0055 17.6 0.3 1 23 216 238 216 238 0.99 8 37 0.35 23 6.2 0.4 3 23 246 267 246 267 0.94 9 37 0.0007 0.046 14.7 0.2 2 23 303 324 303 324 0.98 10 37 0.61 40 5.4 0.1 3 23 332 353 330 353 0.93 11 37 0.038 2.5 9.2 0.4 1 23 364 385 364 385 0.97 12 37 0.061 4.1 8.6 1.7 1 23 391 414 391 414 0.95 13 37 0.00058 0.039 14.9 1.3 1 23 426 448 426 448 0.99 14 37 0.46 30 5.8 5.6 1 21 479 499 479 500 0.94 15 37 2.2 1.5e+02 3.7 2.1 1 20 527 546 527 547 0.95 16 37 0.016 1.1 10.4 1.3 1 19 553 571 553 573 0.96 17 37 1.4 93 4.3 1.3 1 19 579 597 579 600 0.90 18 37 0.012 0.82 10.8 4.3 1 23 629 651 629 651 0.92 19 37 0.022 1.5 9.9 0.1 2 23 654 675 654 675 0.95 20 37 0.001 0.068 14.2 0.0 1 20 683 702 683 704 0.96 21 37 0.0092 0.61 11.1 1.5 2 20 708 726 707 728 0.91 22 37 4.2e-05 0.0028 18.5 2.3 1 23 734 756 734 756 0.96 23 37 0.002 0.13 13.2 1.5 1 21 762 782 762 783 0.96 24 37 0.0091 0.6 11.2 0.9 1 19 787 805 787 808 0.89 25 37 0.0024 0.16 13.0 0.2 1 23 815 837 815 837 0.97 26 37 0.069 4.6 8.4 1.3 1 23 843 866 843 866 0.95 27 37 0.018 1.2 10.2 1.7 1 23 872 894 872 894 0.97 28 37 0.023 1.5 9.9 0.9 1 22 911 932 911 934 0.90 29 37 0.003 0.2 12.7 0.5 1 23 940 962 940 962 0.96 30 37 2.6 1.7e+02 3.4 3.3 1 21 972 992 972 995 0.90 31 37 0.00097 0.064 14.2 0.2 1 23 1001 1023 1001 1023 0.95 32 37 0.013 0.86 10.7 1.5 1 23 1040 1063 1040 1063 0.93 33 37 0.029 1.9 9.6 0.2 1 23 1069 1091 1069 1091 0.95 34 37 7 4.6e+02 2.1 1.8 2 23 1109 1131 1108 1131 0.93 35 37 1.6 1.1e+02 4.1 4.4 1 23 1137 1159 1137 1159 0.94 36 37 0.00016 0.01 16.7 0.9 1 23 1165 1187 1165 1187 0.98 37 37 0.018 1.2 10.2 2.9 1 22 1193 1214 1193 1214 0.95
Sequence Information
- Coding Sequence
- ATGAAGCCTTACCAGTGTCATAAATGTTCCAAATTCTTCACTATTGAAGAGGAATTGGAGCCACACGTAAAAACTCATGGTGAGGAGTGCTCTTTCTGGTGTACGGCCTGTCCAGAGAGATTTATGACGAATGACAATTTAGTGGAACATGTCGGAGCAAAACACCACCAGTGTCCAGAAGGGTTCGCTACTGAGAGTGAAGCTGTTGCACATGTAAAGACTGAAACGGACGGGCCGAGCAAGTGCCGGATCGGTTCCATATCTTTCGCGACGAGTGATAATTTAGCTGAGCATGCCGAAGCTTATGAGTGTCACATATGCCGAGAATGTTACTCTTCTCAGGTTGAATTGGAGGCACACGAAAAAACTCATGCGCAGGAAACGACTTACAAGTGTAAGATATGTCCGGAGAGTTTCAAGTCGAGTGACGATTTGGCGTTGCATGTCAAAGCCAAGCATGAATTGGTAGAACAGAAGCCAGTTACTAATACTTACCATTGTAGTATGTGTCCAAAAGGCTTCTCTACTGCAGGGGCATTGAAGGCACATGAGATTGATGAGTGGAAGCTCAGTTCTAAGAGTTTGATTTTGCCTAAAAAGTTTTCGAAGCGCAAACTGTCAAGACAAGCACTTACAAAGAAGACTTATCAGTGCTACAACTGTTCCAAAAGCTTCCCTGTCAAAGTGGAATTGGAGGTGCACGCAAAGACTCATATTGAGGAGTTGCCCCACTGGTGTACTGCGTGTCCAAAGCGGTTCATGTCGGATGCCAAGTTAGTGAAACACGTTAAAGCTAAgcataataaagaaaaaaatgaaacatgTACGGAGAAGCCTTACCAGGATCAAGATGACTCGACGGTATTTGACATGaacaaaaaagaagaaagtgtTGCGAAACTTGCCCAGTGTCAAGTTTGTTCCAAAGGTTTCAATACGGAAACGGAAGTAGTGGCACATCTACGGACCCACACCGGAGAAGGGCCTTACGGTTGTGCCGTCTGTTCGATGAGTTTCATTGACATTGGCAGTTTAAGCATTCATTTTGAGAAAAGACATGGGGTAGGAAAGATAACATATAAAGAGCCTTTTCGCTGTAACATATGTTTAAAAACTTTCCCTATAGGCGACTATAAGGCACACGCAAAAACTCACATACTTATGCTGTCTCACAAGTGTCCGTTCTGTaaggagaaattaattacaagtaGGAAGTTAATGTTACATGTAAAAGAAGAGCATATGGATTGTAAGTATGCATATAAAAGGAAGCCTTACCAGTGCCAAGAGTGCTCGGCGACATTTAAACGAATTCCTGACTTATACAAGCATTCCAGAAAACACTTAGGCAGGTCACCTTCCCAGTGCCGTCTGTGTTGTAAAACCTTTTTTACTGAGTCTCTTTGGCATAAACATACTACGACCGAGAGCAATTACGTTTGTCGTGACTGCTCGAAATGTTTTATATGGAAAGATCATTACTTGCGGCATGTTTGTAAAAGTGGGGGACAAAAGTGTGAGGTCTGCTCAAAATTATTTAAGCCAGAAGAGAATAGCCATATTTGTGGAACGGAGGTTTACCAGTGCGGTGTCTGTTTACTATGGTTTTCAACGAAAAATCATTTCATGGCGCATACTTGTCCCACACAACAACTTTACCAGTGCTCTGATTGTCCAGAAACATTTATTGCGAAAAATGACTTTAACAATCATAATTGCGGTACTGATATTACTTACAAATGTAGTTTTTGTTTCACACGGTTCATTTCGGAAGTTGAGTTCATGGGACATGGTTGTgttgaaaataatatttatcaGTGCTATTTCTGTTTGGACTGGTTTACTACTAAATATGATTTGCATAAACATGAAGCCGATTGTCCTTTCCCGTGCAAATTTTGTACGAAATGTTTCCCAACTATGACAGAGTTTAAAAAGCATTTGCCAACACACAGAGCAGTGTGTGAATTCTGCAAAGTTACATTTGAACGAGAAATCTACTTGCGAGCGCATGCTAAAGCCCATACGGCAGATGGGTGGAGGTTGTACTATTGTGAGGTCTGTAAGGCAGGCTTTTCTACGTGGGAATCATTGTTGGAGCATATGGCAGAGGCTTCTCTAAAGTGCAAGATCTGTTCGAAATGTTTCTCAAATGAGGACGAGGCTGAATTGCATCTGTCACACGCGAGAGAAAAGTATTACTTGTGTAAAATCTGCTTTAAGTCGTTTACCCAGACTAATGACTTTCAGGTTCATATCAGAAAGCATGTAGTGGACAAACCGTTTCAGTGCGAAGTCTgtttggaatgttttgaaacTAATCATCGATTGGAGCGTCATATAAAAATTGAATCACCGTATAAGTGTAAGTTATGTTCAAAATGTTTCCCAACCCAGAAAGAGGCCGCCATGCATGCCCTGTCACGTGCTGGAGAAAAGACATACCCCTGCCAGGTCTGTTCGAGGGGTTGTGCCACTAAGACAGATTTGATGGCGCATGCGCTAGTACACACAGGAGGGAACAATTACAAATGTAAATTTTGTGCGTATTCGGCCGCGCAGAGTTTTAACTTGCAGATACATTTCATTAGAAAACATGCCAAAGAGAGCCCATTCCAGTGTCAAGTCTGTACAGAAAGCTGCGCAACTAAGACGGTGTTAATGATACACACACAACAACACACAATGGAAGATGCTGAGACGGCTCTGTCACTTGAGGAAGAGAAGCCTTATATGTGTAAATTCTGCCCGGATTCGTTTGTGCGGAGTTTTGAGTTGCAGAATCACTTTACTGCAATGCATGCAGAAATGGGCCTATTCGAGTGCCAAGTTTGTTCCAAAAGCTACGCCACTAAAACGCAGGTAATGCTGCATACACTTGAACATAGAGCGCAGGATGATGGAGAGAAAGCTTACAAATGTAAATTCTGCTTGGATTCTTTTAATAGTTGCTTTGACTTGCAGATACACTCTATAGGAAAGCATACAAAACAGAACGCATTCGAGTGCCAAATTTGCTCCGAAAGCTATTCGACTAAAACGCTCTTAATTCTTCATGCACTAGAACACACAAAACCACATGCTGAGGCGGCACCGTCACCCGAAGTAGAGGAGTCTTACAAGTGCAATATCTGCTTAGCTTCATTTGCAAGTTGTTTCGATTTGCAGATACATTTTATGGGAAAGCATGCCAAAGAGCAAGCATTCGAGTGTCTAGTTTGTTCCGAAAGCTATTCGACTAAAACGCTTTTTGTACTGCATGCACTCGAACACACAAAGCAACGTTTTGAGACGGCGCTGCGACCCGATGTAGAAAAGCCTCTCAGGTGTAAATTCTGCTTAGATTATTTTGCTAGTTTCTATGACTTGCAGTCCCATTTCATGAGAAAACACGAGGAAGAGAAACTGTTTCTGTGTCACTTTTGTTGCCAAAATTTCAGCGACAGTGATAAATTACTGAGCCATGTATCAATTCATTTAGGTAAGACTCCCTACTATTGCGAGATCTGCAACAAAAAGTATGTCAGGGTGGTTCAGTTGTTGGTGCATAAGAGAAGGCACACCGGAAAGAAGGAGTACAAATGTACAGTCTGTTCAGAATCGTTCAGACGGAGGAAAATACTTGACAGGCATCAATGCACATAA
- Protein Sequence
- MKPYQCHKCSKFFTIEEELEPHVKTHGEECSFWCTACPERFMTNDNLVEHVGAKHHQCPEGFATESEAVAHVKTETDGPSKCRIGSISFATSDNLAEHAEAYECHICRECYSSQVELEAHEKTHAQETTYKCKICPESFKSSDDLALHVKAKHELVEQKPVTNTYHCSMCPKGFSTAGALKAHEIDEWKLSSKSLILPKKFSKRKLSRQALTKKTYQCYNCSKSFPVKVELEVHAKTHIEELPHWCTACPKRFMSDAKLVKHVKAKHNKEKNETCTEKPYQDQDDSTVFDMNKKEESVAKLAQCQVCSKGFNTETEVVAHLRTHTGEGPYGCAVCSMSFIDIGSLSIHFEKRHGVGKITYKEPFRCNICLKTFPIGDYKAHAKTHILMLSHKCPFCKEKLITSRKLMLHVKEEHMDCKYAYKRKPYQCQECSATFKRIPDLYKHSRKHLGRSPSQCRLCCKTFFTESLWHKHTTTESNYVCRDCSKCFIWKDHYLRHVCKSGGQKCEVCSKLFKPEENSHICGTEVYQCGVCLLWFSTKNHFMAHTCPTQQLYQCSDCPETFIAKNDFNNHNCGTDITYKCSFCFTRFISEVEFMGHGCVENNIYQCYFCLDWFTTKYDLHKHEADCPFPCKFCTKCFPTMTEFKKHLPTHRAVCEFCKVTFEREIYLRAHAKAHTADGWRLYYCEVCKAGFSTWESLLEHMAEASLKCKICSKCFSNEDEAELHLSHAREKYYLCKICFKSFTQTNDFQVHIRKHVVDKPFQCEVCLECFETNHRLERHIKIESPYKCKLCSKCFPTQKEAAMHALSRAGEKTYPCQVCSRGCATKTDLMAHALVHTGGNNYKCKFCAYSAAQSFNLQIHFIRKHAKESPFQCQVCTESCATKTVLMIHTQQHTMEDAETALSLEEEKPYMCKFCPDSFVRSFELQNHFTAMHAEMGLFECQVCSKSYATKTQVMLHTLEHRAQDDGEKAYKCKFCLDSFNSCFDLQIHSIGKHTKQNAFECQICSESYSTKTLLILHALEHTKPHAEAAPSPEVEESYKCNICLASFASCFDLQIHFMGKHAKEQAFECLVCSESYSTKTLFVLHALEHTKQRFETALRPDVEKPLRCKFCLDYFASFYDLQSHFMRKHEEEKLFLCHFCCQNFSDSDKLLSHVSIHLGKTPYYCEICNKKYVRVVQLLVHKRRHTGKKEYKCTVCSESFRRRKILDRHQCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -