Pgib019672.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020490.1:28629011-28637131[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.064 4.2 8.5 7.1 2 23 74 95 73 95 0.97 2 31 4.9e-05 0.0032 18.3 0.2 2 23 125 146 124 146 0.96 3 31 0.25 17 6.6 4.8 1 23 152 174 152 174 0.93 4 31 0.0028 0.19 12.8 0.6 3 23 182 202 180 202 0.97 5 31 0.0011 0.074 14.0 2.5 1 23 207 229 207 229 0.95 6 31 7.6e-06 0.0005 20.9 0.5 1 23 238 260 238 260 0.97 7 31 2.7 1.8e+02 3.4 1.9 3 20 282 299 281 302 0.89 8 31 0.0085 0.56 11.3 3.6 1 23 308 330 308 330 0.98 9 31 0.00023 0.015 16.2 0.7 3 23 341 361 339 361 0.96 10 31 0.0013 0.086 13.8 0.3 1 23 547 570 547 570 0.92 11 31 1.4e-05 0.00094 20.0 0.8 3 23 591 611 589 611 0.96 12 31 0.011 0.75 10.9 3.4 1 23 617 639 617 639 0.98 13 31 0.21 14 6.9 0.5 3 23 647 667 645 667 0.97 14 31 0.0032 0.21 12.6 0.8 1 23 673 695 673 695 0.97 15 31 2.7e-05 0.0018 19.1 1.8 3 23 703 723 701 723 0.98 16 31 0.00031 0.021 15.8 0.3 1 23 729 751 729 751 0.98 17 31 7.8e-05 0.0052 17.7 4.9 1 23 757 779 757 779 0.98 18 31 2.3 1.5e+02 3.6 4.8 3 23 787 807 787 807 0.98 19 31 0.19 12 7.0 0.3 6 23 818 835 813 835 0.96 20 31 0.0012 0.078 14.0 1.5 3 23 843 863 841 863 0.97 21 31 0.00014 0.009 16.9 0.3 1 23 871 893 871 893 0.95 22 31 0.36 24 6.1 3.4 2 12 900 910 899 923 0.70 23 31 0.0001 0.0067 17.3 0.5 3 23 931 951 929 951 0.98 24 31 7.2e-05 0.0048 17.8 0.8 3 23 959 979 957 979 0.98 25 31 0.0005 0.033 15.1 0.7 2 23 986 1007 985 1007 0.91 26 31 0.021 1.4 10.0 0.1 1 23 1013 1035 1013 1035 0.97 27 31 2.1 1.4e+02 3.7 6.6 2 23 1042 1063 1041 1063 0.96 28 31 0.041 2.7 9.1 0.8 2 20 1069 1087 1068 1090 0.91 29 31 0.0029 0.19 12.7 1.7 2 23 1097 1118 1096 1118 0.96 30 31 0.0021 0.14 13.2 0.1 1 23 1123 1145 1123 1145 0.97 31 31 1.3e-06 8.4e-05 23.3 0.4 1 23 1151 1173 1151 1173 0.98
Sequence Information
- Coding Sequence
- ATGAAGTCCGAGACTGTTGTAGGATGCAATAGTATGGGGGCTGGAGGGGCGCTTCCTGGATGTGACAATGaCAAAGCCCGTGTtaaagatgaaatgtgcagtcGTCAAGATTTAACTGGCCTTCTGCTGGAAAACGAGCTATTGGAAAATTATGATGAAACTGATTATGGAATGAACGGCTTTGACGTGAAACAGGAGCATATAGATTGGGAAACATTGAAATGCCACGTATGTAACGAGATTTTTTCCACGCATAGCGACCACCATGCCCATATGCTCACACACACAGAACGAATTCAATTAGAGCCGACCGACCAAAGTAACAGGCAAGCAGGTATAGATCTGAAGCCAGTCAAGACCGTGAAACCGTTGCAATGTGATACATGTGGAACGGCGTTTGCTAGCAGAACTACACTAGAGACTCATATGTTACTACACGTTGTGGCAACGTCATTCTGCTGCCACATATGTAATGTTCAATTCATGAAAATGAGCTCACTTGAAAAACATAATGTAAAACATACTGGGAATAGAGCATATGGTTGTAACATATGCCATGTCACGTATAACAATCGTAATGACCTGCAGATACATGCGTTGATGCACAGGGGTAAGAATTTTCAGTGTTGCTTATGCAACAAGAAATTTAATGTTATCAGTCAACTTAAGAGACATGCGTTGGCACATAAAGCGGCAAAAGTGTTTAAATCATTTGTTTGCGAGATATGCCATAAGACTTTTGCCAAACGTGCTGATCTAAAGGTTCATGTGTTGGTTCATAGAGATAAAATGGCACCCAACTGTCGTAAAAGGTTAAAATATACAAGGGAAAAATCTAATGTTTGTATCATATGCCGAAAGGTATGTGACAACCGTAATGATCTCAAAGTGCATGTTTTGTGTCATAAGGGTAAAAATGGGTTTACTTGTCGTATATGTAACGAGAAATTTGATATTTTCAGTCATTTTAGGAGACATGTGTTAAGCCATACTCGTAGAAAGCCGTTTAAATCATTATTTTGTAGCATATGTCAAAAGATATTTGACAATCGTAAGGATCTCAAAGTTCACACGATTTCGCATGGTGATGATCAATCGCTGAGTGATAGAAATTTGAGTGACATACTGGATAGCGAACATAAGGTGATAGAGGAACCAAAGATGCAGACTAGCATGAGGGATATCACTCATACGCCAGCATATAATCTGGAAGAAACGCCGAAAATTGGAGTACAGGATAACTACGTTACGGTAACGCACAATGTGGAAGAACTTCATCACAGTTGCGTATGGGATAGTATGCAAACAGTGGTACCTACTGTGGAAGCGTCACTGACTGAAGGCACATTGGCTAAGGCAGATAAAGTAACCAATAATTTAGTAGAAACGCTGGAAAGTGTCGAGCCGAGTAACCCGCATACAGTGGAAAATGCCCACCATAGTTACATATGGGATAGCACGACACTCACTCTGGACGACACGCTGGAGATGGATTCTGAGGATGTGACGCATTTAGGGAAAGACACGTACCACAGTTACATATGGGATGGCAGGCAACCGGAAACGCCTACTATCGAAGAAGTCTTACCTGGAGAAACGTGGGATAACACGCATATGGTAACACTCACAGAAGAGCCATTCCGTTGTCAGATATGCCAGAGAATATTCGTTAACGAGAGGGGTCTCAAGACTCACACCACTGCAGCTCATAGCACGAAAAGATCTGATTGCTCGCGTTTTGTAGAACCTATTCTGGAAGAACCATACGGATGTAGCATTTGCCGGGAGACTTTTTCCAGCAACAGAAACCTCAAGAAACATATGCTAGCGCACAGAGCGGAAAAGCCATTCACCTGTCATATATGCAGTAGGAAAGTGTTCTTATATGATACTCTTAAATCTCATATGTTAACACATATAGCCAAAAAGCCGTTTGGGTGTAACGTATGCAAAGACTCATACTCCAACATTTTTAGTCTCAAGTCACATACCTTGGTGCATCCAGGAGTTCAGATGTTCGATTGTAATATATGTGTGAGGGTGTTTTATGGTTTTGAAACATATAAAACGCATATGCTAACACATGCGGCGGCAAATCCGTTTGGATGTAATTTTTGTCAAAAGTCGTTCTCAAGCAGCAACGATCTCAAGGAGCATATGTCGAGACACGCAGAGGCTGAACCGTTCCAGTGTGCAATTTGTAATAATTTGTTTTCTGATAGCAATATGCTAAAGGTACATATGTTGTCACATATCGGAAAAAATCTGTACCACTGCACTATATGTAGAAGGAGGTTTTTCAAATGGAGTAACTTAAAGACGCATTTGTTGACGCATGCTGAAAAAGAACCAAATGGATGCCACATGTGTCAAGCGACGCATGCGAACGTATCTAAGCTTAAAAAACATATGTTAAAGCATGCATTCCAAAAGTCATTCTCATGTATTCCGTGCACGAAAATATTTTCTAGCTTGGGAAAGTATAACACGCACATCATAAGTCATATAACAGAGAAACCATATGGTTGCAATAAATGCAAAAGAACATTCTCGAAGGGCAGTGCCATCAAGAAACATATGTTGTCACATTCGGGGTATGTTGTGCCAAATTTTCTTTGCAACATATGCATGAAGACATTCCCCAAGAACAGTGATCTCGCAGCTCATATGAATAACCATACTGATGAACCAACTATCAAGTGCCACATATGTGACAAAACTTTTGATAATGACATATGGGGTAGTATTAAGATGCATATGTTAACACATGGAACCGAGCAGCCCTTTGGATGTAGCACATGCGGGGAAAAATTCACGGTGTGGAACAACTTTAAGGCCCATTTGTCGACACATACGATGAAACATTCCTTTGGATGTAATTTATGTAAAGAGAAATTTTCCAGCAATGGTGATCTCAAGGTGCATATGTTTACCCATAAAGAGGAGAAAGTTTTGAAGTGTGACGTATGTAAAGAGACGTTTCGGTCACGTGAGCTTTTAAAATCGCATTTGCCTACACACACAGCGGAAACCCAATTTCAGTGTGGCATTTGCCAGAAGATATTATTGACGAGAGTCGACCTAAAGGTACACATGTTAGCTCACCCGGGGGAGGACCCCCTGCAATGTCACATATGCAAAGAGATATGTTGGTCGACTTTTCACTTGACGAAGCATTTGACAACACACGGCGAAACTCCACTACATTGCTATGTGTGTAACACAAAATTTGTTTCCAAACCTAGACTCATCAAACATATGCCAATACATATGGCTAATAATCCACTTAAGTGTAAAATATGTAGAAGGGTATGCTCGACGCAAGGTAGCTACGATAGGCATGTCCTAATACATACACGTAAGGTATACACGTGCGAGTTGTGTGGTAAAACTTACTTGAATCTGACTGGCCTCAAGAATCATATAATAGCACACACGGGGGATAAACCTTTTCAGTGTCCGGTATGTAGTAAGACGTTTGCGGTCAAGTCGTATCTGCGAATACATATGACAATTCATGAGAAACATAGACAGCTTGTGAGGGAATGGGAGTATTTCGGTGAATCCGATGGTGAAATCAGACCATGGTAA
- Protein Sequence
- MKSETVVGCNSMGAGGALPGCDNDKARVKDEMCSRQDLTGLLLENELLENYDETDYGMNGFDVKQEHIDWETLKCHVCNEIFSTHSDHHAHMLTHTERIQLEPTDQSNRQAGIDLKPVKTVKPLQCDTCGTAFASRTTLETHMLLHVVATSFCCHICNVQFMKMSSLEKHNVKHTGNRAYGCNICHVTYNNRNDLQIHALMHRGKNFQCCLCNKKFNVISQLKRHALAHKAAKVFKSFVCEICHKTFAKRADLKVHVLVHRDKMAPNCRKRLKYTREKSNVCIICRKVCDNRNDLKVHVLCHKGKNGFTCRICNEKFDIFSHFRRHVLSHTRRKPFKSLFCSICQKIFDNRKDLKVHTISHGDDQSLSDRNLSDILDSEHKVIEEPKMQTSMRDITHTPAYNLEETPKIGVQDNYVTVTHNVEELHHSCVWDSMQTVVPTVEASLTEGTLAKADKVTNNLVETLESVEPSNPHTVENAHHSYIWDSTTLTLDDTLEMDSEDVTHLGKDTYHSYIWDGRQPETPTIEEVLPGETWDNTHMVTLTEEPFRCQICQRIFVNERGLKTHTTAAHSTKRSDCSRFVEPILEEPYGCSICRETFSSNRNLKKHMLAHRAEKPFTCHICSRKVFLYDTLKSHMLTHIAKKPFGCNVCKDSYSNIFSLKSHTLVHPGVQMFDCNICVRVFYGFETYKTHMLTHAAANPFGCNFCQKSFSSSNDLKEHMSRHAEAEPFQCAICNNLFSDSNMLKVHMLSHIGKNLYHCTICRRRFFKWSNLKTHLLTHAEKEPNGCHMCQATHANVSKLKKHMLKHAFQKSFSCIPCTKIFSSLGKYNTHIISHITEKPYGCNKCKRTFSKGSAIKKHMLSHSGYVVPNFLCNICMKTFPKNSDLAAHMNNHTDEPTIKCHICDKTFDNDIWGSIKMHMLTHGTEQPFGCSTCGEKFTVWNNFKAHLSTHTMKHSFGCNLCKEKFSSNGDLKVHMFTHKEEKVLKCDVCKETFRSRELLKSHLPTHTAETQFQCGICQKILLTRVDLKVHMLAHPGEDPLQCHICKEICWSTFHLTKHLTTHGETPLHCYVCNTKFVSKPRLIKHMPIHMANNPLKCKICRRVCSTQGSYDRHVLIHTRKVYTCELCGKTYLNLTGLKNHIIAHTGDKPFQCPVCSKTFAVKSYLRIHMTIHEKHRQLVREWEYFGESDGEIRPW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -