Pgib019852.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Psococerastis gibbosa
Gene Symbol
-
Assembly
GCA_963971405.1
Location
OZ020490.1:30125988-30131478[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0023 0.15 13.0 1.0 1 23 55 77 55 77 0.97
2 17 1.4e-06 9.2e-05 23.2 3.3 1 23 83 105 83 105 0.99
3 17 5.6e-06 0.00037 21.3 4.1 1 23 111 133 111 133 0.99
4 17 3.4e-05 0.0022 18.8 2.1 1 23 139 161 139 161 0.98
5 17 0.00051 0.034 15.1 0.6 1 23 167 190 167 190 0.93
6 17 5e-05 0.0033 18.3 1.1 1 23 239 261 239 261 0.98
7 17 2.2e-07 1.5e-05 25.7 4.4 1 23 267 289 267 289 0.99
8 17 7e-07 4.6e-05 24.1 3.6 1 23 295 317 295 317 0.98
9 17 0.022 1.5 10.0 0.1 1 23 323 345 323 345 0.98
10 17 7.4e-06 0.00049 20.9 2.8 1 23 351 373 351 373 0.98
11 17 3.3e-05 0.0022 18.8 6.2 1 23 379 401 379 401 0.99
12 17 9e-06 0.0006 20.6 3.5 1 23 407 429 407 429 0.99
13 17 9.1e-06 0.0006 20.6 2.4 1 23 435 457 435 457 0.98
14 17 2.5e-07 1.7e-05 25.5 4.0 1 23 463 485 463 485 0.99
15 17 2.4e-06 0.00016 22.4 3.9 1 23 491 513 491 513 0.99
16 17 7.5e-05 0.005 17.7 2.5 1 23 519 541 519 541 0.99
17 17 9.6e-07 6.4e-05 23.7 2.3 1 23 547 569 547 569 0.99

Sequence Information

Coding Sequence
ATGTCGAGAACCTTCGTTGCATTGTACCTTGAGgaACCTGAAGGAGAAGACGATGAGGTTGGCTTAATAACAGTAAAATTAGAGGTGTCATCTGACGAGGAGAATGACGAGGAGCCGGACAATACGCAACAACTGGacgagaaaaaaaagtcaaaggGAAGATACCAGTGCATTGTATGTTCCAGAAGGTTCGATATCAAGAAAAATTTGCGGATCCATACAAGAATTCACACAGGAGAGAAACCCTATCAGTGTCCAGAATGTTTGAAAAGTTTCACTACTTCCAGCTGTTTGCAAGGACACAGGAGAACACACAGTGGAgagaaaccttataagtgtCAATTCTGTCCCAAGTGTTTCGCTAAAGGTAGTGACTTGCAAAGGCATACAAGAACTCACACGGGAGAGAAGCCTTACACATGCAAAGTTTGTTCAAAATGTTTCACTCAAATGGCCGGGCTGCGAGTACACGAAAGATTACACAGCGGTGAGAAACCATACCAGTGTAATATTTGTGACAAACGTTTCGTGTCCGGTGGTGACCAAAAGAAGCATTCCAAACTAGTACATTCTGAACCTGAAGATGAAGAACTAGAAGAAGCTGAGGTTGGCTTGTTGGAAACCATTAAATTGGAGGTTAAATCTGAGGATGAAAATGATAATTGGACATTGCCAGAAAGTACAGAGCATCTTGAAGAGAACGAGAAAAAGCTCCACCAGTGCGTCATCTGTCCTAAAAAGTTTGATTCAAGAAAAGACTTGGATGTCCACACAAGAGTTCACACAGGAGAGAAGCCCTATGAGTGTCCTGACTGTTCGAAGAGTTTCTCTCATCCCAGCAATTTCCACGCACACAAAAGAACCCATAACGGGGAGAAACCTTTTGAGTGCCCGGTCTGTTCCAAATGCTTCACTAAAAGCGGCAACCTACAGAAACATACAAAAAGCCATAAAGGTGAGAACCTTTATCAGTGCCCTGAATGTTCTGAGTGGTTATCCGACTATAGTACGTGGCGGGCGCATGTAAAAAGTCATAAAGGGGTGAAACCTCACCAGTGCCAGTTCTGTTCGAAGATTTTCACGAGAAAAGGAGACTTACAGGTGCATACAAGAATCCACACcggggagaaaccttaccagtgtaaAGTTTGCACCAAGTCGTTTAAGACATGTTTTGAATTGACAAGTCATTCAAGGACACACAGTGGAGAAAAACCATACAAGTGTCAAGACTGCTCAAAGAGCTTCGCGCAGTGTGGCTCTTTCCTGGCACACAGGCGAACTCACACGGGGGAAAAACCTCACCAGTGCCAGTATTGTGAGAAAAGCTTCGCTAAGGGTTGGAGTTTGAAAAATCATATAAGAACACATACGGGGGAAAACCCGTACCAGTGCCCTGTTTGCTCCAAGTGTTTCAAGTCAAGTTCTAACTTGCAGAGTCATTCAAGATCGCACactggggagaaaccttacAAGTGTCAAGTGTGTTCGAAATGTTTCGCTAATAGTAGTGACATACAGAGGCATACGCGGACTCATACTGGTGAGAAGACTTTCCAGTGCAAAGTCTGTTCTAAGCGTTTCGCGACAGGTTATAAGCTGACAAGTCATTCGAGAACCCAtacgggggaaaagccttatcaGTGTGAGTTGTGTTTAAAACGTTTCTTTGATAGTAGTAATTTACAGAGGCATTTGAAGACGCATACACGAGAGGCAACTCAACAATCCATAAGGGCGTGA
Protein Sequence
MSRTFVALYLEEPEGEDDEVGLITVKLEVSSDEENDEEPDNTQQLDEKKKSKGRYQCIVCSRRFDIKKNLRIHTRIHTGEKPYQCPECLKSFTTSSCLQGHRRTHSGEKPYKCQFCPKCFAKGSDLQRHTRTHTGEKPYTCKVCSKCFTQMAGLRVHERLHSGEKPYQCNICDKRFVSGGDQKKHSKLVHSEPEDEELEEAEVGLLETIKLEVKSEDENDNWTLPESTEHLEENEKKLHQCVICPKKFDSRKDLDVHTRVHTGEKPYECPDCSKSFSHPSNFHAHKRTHNGEKPFECPVCSKCFTKSGNLQKHTKSHKGENLYQCPECSEWLSDYSTWRAHVKSHKGVKPHQCQFCSKIFTRKGDLQVHTRIHTGEKPYQCKVCTKSFKTCFELTSHSRTHSGEKPYKCQDCSKSFAQCGSFLAHRRTHTGEKPHQCQYCEKSFAKGWSLKNHIRTHTGENPYQCPVCSKCFKSSSNLQSHSRSHTGEKPYKCQVCSKCFANSSDIQRHTRTHTGEKTFQCKVCSKRFATGYKLTSHSRTHTGEKPYQCELCLKRFFDSSNLQRHLKTHTREATQQSIRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-