Basic Information

Insect: Psococerastis gibbosa
Gene Symbol: -
Assembly: GCA_963971405.1
Location: OZ020487.1:45569798-45573019[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.7e-05 0.0038 18.1 0.8 1 23 97 119 97 119 0.96

2 19 4.4e-06 0.00029 21.6 3.9 1 23 125 147 125 147 0.97

3 19 8.7e-07 5.7e-05 23.8 0.1 1 23 153 175 153 175 0.98

4 19 1e-06 6.6e-05 23.6 1.3 1 23 181 203 181 203 0.96

5 19 3.9e-05 0.0026 18.6 2.6 1 23 209 232 209 232 0.96

6 19 0.0049 0.33 12.0 6.1 1 23 238 260 238 260 0.97

7 19 0.49 33 5.7 8.3 1 23 266 288 266 288 0.96

8 19 0.0002 0.013 16.4 4.8 1 23 294 316 294 316 0.98

9 19 6.8e-06 0.00045 21.0 0.6 1 23 322 344 322 344 0.97

10 19 7.6e-06 0.0005 20.9 1.0 1 23 350 372 350 372 0.97

11 19 7.4e-08 4.9e-06 27.2 2.6 1 23 378 401 378 401 0.98

12 19 0.0012 0.078 14.0 6.4 1 21 407 427 407 429 0.94

13 19 3.6e-06 0.00024 21.9 0.5 1 23 435 457 435 457 0.98

14 19 6.8e-06 0.00045 21.0 2.6 1 23 463 485 463 485 0.99

15 19 6e-06 0.0004 21.2 1.0 1 23 491 513 491 513 0.98

16 19 1.8e-05 0.0012 19.7 3.5 1 23 519 541 519 541 0.99

17 19 1.7e-05 0.0011 19.8 0.7 3 21 549 567 547 569 0.95

18 19 7.4e-06 0.00049 20.9 3.8 1 23 575 597 575 597 0.98

19 19 0.042 2.8 9.1 2.6 2 23 604 625 603 625 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.7e-05	0.0038	18.1	0.8	1	23	97	119	97	119	0.96
2	19	4.4e-06	0.00029	21.6	3.9	1	23	125	147	125	147	0.97
3	19	8.7e-07	5.7e-05	23.8	0.1	1	23	153	175	153	175	0.98
4	19	1e-06	6.6e-05	23.6	1.3	1	23	181	203	181	203	0.96
5	19	3.9e-05	0.0026	18.6	2.6	1	23	209	232	209	232	0.96
6	19	0.0049	0.33	12.0	6.1	1	23	238	260	238	260	0.97
7	19	0.49	33	5.7	8.3	1	23	266	288	266	288	0.96
8	19	0.0002	0.013	16.4	4.8	1	23	294	316	294	316	0.98
9	19	6.8e-06	0.00045	21.0	0.6	1	23	322	344	322	344	0.97
10	19	7.6e-06	0.0005	20.9	1.0	1	23	350	372	350	372	0.97
11	19	7.4e-08	4.9e-06	27.2	2.6	1	23	378	401	378	401	0.98
12	19	0.0012	0.078	14.0	6.4	1	21	407	427	407	429	0.94
13	19	3.6e-06	0.00024	21.9	0.5	1	23	435	457	435	457	0.98
14	19	6.8e-06	0.00045	21.0	2.6	1	23	463	485	463	485	0.99
15	19	6e-06	0.0004	21.2	1.0	1	23	491	513	491	513	0.98
16	19	1.8e-05	0.0012	19.7	3.5	1	23	519	541	519	541	0.99
17	19	1.7e-05	0.0011	19.8	0.7	3	21	549	567	547	569	0.95
18	19	7.4e-06	0.00049	20.9	3.8	1	23	575	597	575	597	0.98
19	19	0.042	2.8	9.1	2.6	2	23	604	625	603	625	0.94

Sequence Information

Coding Sequence: ATGGACGTGATAATAAAGGCGGAACCTGAGTCCGCTTCCGAAGATGAAACAGATGATTCAACTACCTCGGAGTCAGACACTAGCCTGCCGCCCGAGGAAGACGAAATCAATAACAACCCGAGTCAAATCATTTCTGTCGAGTCGAACCTGCACCGAAACTCAGAACATGGGGATAACTTCGATCTGGGCACATTTCTATGCAGCGGACCCTGGGCTGCCGATACTACCATTAAAATTGTCGACGTCCAGGGAAGCGAAGTTAACATAGCTGAGGACGACTTGAAAGGCTACCGCTGCCACGTATGCAAGAAGGTATTTACCGAGAAAGTTAACATGCTCGACCATATTGCTGGCCACGTCGACGAATTGCCCTACTGCTGTGACGATTGTGGGAGACGTTTTCGCGATAAGTCCGCTCTGCGAAAACACAGTTATACTCATACGGGGCTTAAACCTTTTCCTTGTCCTATCTGTGAGAAACCTTTTGCGCTCCAAAGTAATTTAAGGAAGCATGTAGAAACGCATTCGGCAGATAAACCGTTTAGTTGTGAAATTTgtgacaaaaaatttaaaaggcaAGCCCATTTAGAAAACCATGTAATACTCCATACTGGCGAAAAGCCATATTCGTGCCAATACTGTGATAAAAAATTTTCCCACAGCTATGGTGTGACGTCGCATATCATGTATGTTCACACGAAAGAGAAACGGTTTTTCTGTGAGTACTGCGGAAAGGGATTCTGCTCGAAAAAAGACTGTACCATTCATACTAGGGTTCATACAGGGGTGAAGCCGTACCACTGTCTGCACTGTGAACAGGCGTTTAGCTCACAACACCGTTTACATCAGCATTCAAGCGTGCATACAAACGAGCGTCCACATACCTGTCACATCTGCTCAAAGAGCTTTAGGCTTTTGGGTAATTACAAAAACCACTTGCTTATGCACGCAGGCGTTAAACCCCATATTTGCGATGATTGTGGCGCGAACTTTACGACAAGGGCTAATTTGTGGAGTCACCGAAAAATTCATGACGATCTTAAGCCTTTTAGCTGCGACTTTTGCGGCACTGCCTTTAAGCGAAAGAAGGACTTGCAAATACACACTTCTGTGCACTCGGATGATAGACCCTATACCTGCGAGTACTGCCCAAAATCGTACAAACGACAGTCCCATTTGCGTGTTCACTTACAGACAGCGCATTCAGATCTACGTCCCTTTTCTTGCCACCAATGCAACAGAACATTTAAACTTCGGGCTAACTTAAATAAACATCTGCAATGTCATACTGGCGTTAAGCCGTTTACCTGTAAGATTTGCTCGAAAGGTTTTGTCGCTAAAGGTAACTTAAAAATCCACCTTAGGTCCCATTCTGGTGAACGCCCTTATAGCTGTAAAATTTGCAAAAAGACTTTCTCCCAAACGGCGAATAGAAACACGCATATGCTCACGCATGGCGCTAAGAAGAATTTCATATGTGAGGTTTGCAATAAAGCGTTTTATAAACGCGATTATTTGTTTCTCCACATGATGACCCATACAAAGGAAAAACCGTACTCGTGTACCTTTTGCCATAAGCGATTTCGCAGTAATGGCAATATGGTGGTTCACGTTAGAACTCATACTAGAGAACGGCCATATGGCTGTGATTATTGCGGAAAAAGTTTTTCGCAGAGGGGGGCTCTGGTTGTTCATATTCGATGTCACACAGGTTATAAGCCCTATGATTGCGAACTGTGTCACAAGGGATTTCATAGTAAAGGAAATTTGAATAAGCATATGATTACACATGACCCGGATCGGTATTTGTATTGCCATTTTTGTCATgatgtttttgtttataaaGAGAAATTGCTACGGCATTTGGAAGCTCATATGAAGAAGGAACGTTTTTAG
Protein Sequence: MDVIIKAEPESASEDETDDSTTSESDTSLPPEEDEINNNPSQIISVESNLHRNSEHGDNFDLGTFLCSGPWAADTTIKIVDVQGSEVNIAEDDLKGYRCHVCKKVFTEKVNMLDHIAGHVDELPYCCDDCGRRFRDKSALRKHSYTHTGLKPFPCPICEKPFALQSNLRKHVETHSADKPFSCEICDKKFKRQAHLENHVILHTGEKPYSCQYCDKKFSHSYGVTSHIMYVHTKEKRFFCEYCGKGFCSKKDCTIHTRVHTGVKPYHCLHCEQAFSSQHRLHQHSSVHTNERPHTCHICSKSFRLLGNYKNHLLMHAGVKPHICDDCGANFTTRANLWSHRKIHDDLKPFSCDFCGTAFKRKKDLQIHTSVHSDDRPYTCEYCPKSYKRQSHLRVHLQTAHSDLRPFSCHQCNRTFKLRANLNKHLQCHTGVKPFTCKICSKGFVAKGNLKIHLRSHSGERPYSCKICKKTFSQTANRNTHMLTHGAKKNFICEVCNKAFYKRDYLFLHMMTHTKEKPYSCTFCHKRFRSNGNMVVHVRTHTRERPYGCDYCGKSFSQRGALVVHIRCHTGYKPYDCELCHKGFHSKGNLNKHMITHDPDRYLYCHFCHDVFVYKEKLLRHLEAHMKKERF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -