Pgib019791.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Psococerastis gibbosa
Gene Symbol
-
Assembly
GCA_963971405.1
Location
OZ020490.1:29506387-29513379[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 2.4e-05 0.0016 19.3 3.2 1 23 147 169 147 169 0.99
2 23 1.6e-05 0.001 19.9 2.9 1 23 175 197 175 197 0.98
3 23 1.4e-05 0.00092 20.0 0.3 1 23 203 225 203 225 0.98
4 23 0.00015 0.01 16.8 2.7 1 23 231 253 231 253 0.97
5 23 0.024 1.6 9.9 1.0 1 23 259 282 259 282 0.87
6 23 1e-06 6.6e-05 23.6 2.6 1 23 292 314 292 314 0.99
7 23 2.2e-05 0.0015 19.4 1.6 1 23 320 342 320 342 0.99
8 23 0.023 1.5 9.9 0.2 1 23 348 370 348 370 0.98
9 23 3.7e-06 0.00024 21.8 7.2 1 23 376 398 376 398 0.99
10 23 7.2e-06 0.00048 20.9 4.3 1 23 404 426 404 426 0.99
11 23 8.4e-06 0.00056 20.7 4.7 1 23 546 568 546 568 0.99
12 23 0.00035 0.023 15.6 1.3 1 23 575 597 575 597 0.98
13 23 8.8e-05 0.0058 17.5 1.3 1 23 603 625 603 625 0.99
14 23 1.9e-07 1.3e-05 25.9 1.8 1 23 631 653 631 653 0.98
15 23 0.0021 0.14 13.2 2.2 1 23 659 682 659 682 0.90
16 23 1.8e-05 0.0012 19.7 2.1 1 23 692 714 692 714 0.99
17 23 2.1e-06 0.00014 22.6 3.9 1 23 720 742 720 742 0.98
18 23 2.7e-06 0.00018 22.3 0.8 1 23 748 770 748 770 0.99
19 23 1.6e-05 0.0011 19.8 3.9 1 23 776 798 776 798 0.99
20 23 0.0049 0.32 12.0 0.3 1 23 804 826 804 826 0.98
21 23 7.9e-07 5.2e-05 23.9 4.5 1 23 832 854 832 854 0.99
22 23 7.7e-08 5.1e-06 27.1 0.2 1 23 860 882 860 882 0.99
23 23 8.4e-05 0.0055 17.6 2.9 1 23 888 911 888 911 0.97

Sequence Information

Coding Sequence
ATGATTGGCCCTCTTCTGGCCCAGAGGACAATTTTCAACCAACTAGatgtttttgtTAAGACGGAAGAGCAATGGTGCATGTCGGAGGTGGAAGGTCTAGATGATGCCCAAGAAAATGGTAATGCTTGCTACGTCTCATATGAGCATAAAGCTCAGTTGGTCCAGCCTTCAATTTTACTATACATCAAAACATCAAACTCTAGATTAGAGGTGGGCCGTACTTGGCTTTCTCGGGAACTTGCATTCTCAGATCACGTCATTCAAAAAGAACGGTTCTTATTATGTGTTCTTTTAAGAACAGgaCTAACAGACGAAACTATTATTAAGTGTGAAGTGATATCTGAAAATGAGGAAGAAGCATTATCAGGAACAGATTTGTCAAGAAAAATTAAGATCACGAGGGAGCGCTTTGACGAGGATAAGCTAATTTCGGGAAAATACCAATGTCCGGTCTGCTTAAAATACTTCTCCAACAGCAGTCATTTCGAACTTCACACTAGATCGCATGCAAAAGCTACGTCTCACAAGTGCGAAATCTGCTCTAAATACTATTCTTCCCGTGCTAACTTACAAATACATATGAGATTTCATACAGGTGAGAAACCTTACCCATGCAAAGTCTGCTCGAAAGGTTTCGCTACTAGTGGCACCTTACTGAGGCACACAAGGGGACACACAGGAGAGAAACGTCACCACTGTCAAACCTGTTTGAAGCGTTTCGCTACGAGTGGCGATTTAACAGTGCACATAAGAATCCATACAGGcgagaaaccttaccagtgccAGTTTTGTGAAAGACGTTTTGCCACTAATAACGGCAATTATTGGAGCCATATTAACACTCATATCGGAGATAAGGTTTCCCTGAATATATATAAGTGTCACATCTGTTCGAAAGGATTTGCTACTAAAGAAAACTTACTGCAGCACACTAGGATGCATACGGGAGAGAAGCCATACCAATGCGCAGTTTGTTCAAAATGCTTCTCCACCAGTAGCAAAATGCTTGCACATGCAAGAATTCACTCTGGGGAAAAGAATTTCCAATGCGACGTCTGTGCAAAAAGGTTTCTGTCAGGTGGCCGGTTGCGCGCGCATGTGCGAACTCATGTAGAGGAGAAACCTTACAAGTGTGAGCTTTGCCCGAAATGCTTTAGTCAGAAAAGAGACTTGCACAGACATACAAGAACGCACACGGGAGAGAAGCCTTACCGGTGTAACTTTTGTCCGAAACGTTTCTGTCAAAATGGGGACCTAGTAAGGCATACGAGAAGGCATACGGGGGAAAAGCCTTTTCAGTGTACTACTTGTGTCAAAGATTCTGATGTTCCTGCTGTAATTGACGCTGAATTCAGTTCGGTTGATGGTAAGTATCGTGCAAGCTTGGAACTGAAGTCGTGGGCAAATGAATTTCCTTACCTTTCGCCCATTACTTTAAGATATAATGAATGGCACGCTGCGTTTATACCAAGGCATGATTGCACTGTAGggCTGATCGAGGAAACAATTATTAAGTGTGAAGTGATATCTGAAAACGAGGAAGAGCCATCCTCAGGAACAGGCTTGCCGAAAAAAGGTACTACCACGGTCGAGCGAAATGACGAGGATAGCATTGCAAACAAAATATCGAGTGAATATCAATGTCCGGTCTGTTTCAAATTCTTCTCCAACCGAAGTCATTACGAACTCCACACTAGAACGCATGCAAAAGAGCCGTCGTCTCACAAGTGTGAAGTCTGCTCTAAATGGTATTCTTCCAATGCTAACTTGCAAATACATAGGAGAATCCACACTGGAGAAAAGCCATACCAATGCAAAGTCTGCTCAAAGGGTTTCACTACTAGTGGCATCTTACTGAGGCATACAAGAAGGCATACAGGAGAGAAACGTCATCAATGTCCGACCTGTTCGAAGCGTTTCTCCACAAGTGGCGATTTAACAGTGCACATACGAACTCATACtggagagaaaccttaccagtgccAGTTTTGTGAAAAACGTTTTGCAACTAATAATGGAAATTTTCGGAGGCACATAAACACTCATTCCGGAGATAAGGTGTCCGTGAAAATCTATAAGTGTCACGTCTGCTTGAAAGGATTTGGTAGTAAGGGAAACTTACAGCAGCACACTATGACGCATACAGGAGAGAAGCCTTTTGAGTGTGACAATTGCTCCAAGTGTTTCAGTCAAAAGGGAGACTTACTGAAGCATACAAGAACCCATAcgggggaaaaaccttacaagtgtCAGACTTGCCCTAAAAGTTATGCTACTTATGGAGACTTGCAGGTACATACCAGAACACATTCcggagagaaaccttaccaaTGCGCAGTTTGTTCGAAATGCTTCTCCAGCAGTAGCCACATGCTTGCACATACAAGAATTCATACAGGGGAAAAGAATTTCCAGTGTGACGTCTGTACGAAGAGTTTTCTATCAGGCGGCCGGTTGCGTGCGCATGCGCGAACTCATATGGGGGACAAGCCTTATGAGTGTCAACTTTGTACGAAATGCTTCAGTCAGAAAGGAGACTTGCAGAGGCATACAAGAACACACACGGGcgagaaaccttaccagtgtgaAGTTTGCCCGAAAAGTTTTAGTCAAAATGGGGACCTTGTGAGGCATGCTAGGACACATTCGGGGGAGAAGCCGTATCCATGTGCTGCTTGCGAAAAATGTTTCTCTAATCGTAAGCACTTACAGGCGCATGAGAGAAGAGTTCATTCAGGGGATTAG
Protein Sequence
MIGPLLAQRTIFNQLDVFVKTEEQWCMSEVEGLDDAQENGNACYVSYEHKAQLVQPSILLYIKTSNSRLEVGRTWLSRELAFSDHVIQKERFLLCVLLRTGLTDETIIKCEVISENEEEALSGTDLSRKIKITRERFDEDKLISGKYQCPVCLKYFSNSSHFELHTRSHAKATSHKCEICSKYYSSRANLQIHMRFHTGEKPYPCKVCSKGFATSGTLLRHTRGHTGEKRHHCQTCLKRFATSGDLTVHIRIHTGEKPYQCQFCERRFATNNGNYWSHINTHIGDKVSLNIYKCHICSKGFATKENLLQHTRMHTGEKPYQCAVCSKCFSTSSKMLAHARIHSGEKNFQCDVCAKRFLSGGRLRAHVRTHVEEKPYKCELCPKCFSQKRDLHRHTRTHTGEKPYRCNFCPKRFCQNGDLVRHTRRHTGEKPFQCTTCVKDSDVPAVIDAEFSSVDGKYRASLELKSWANEFPYLSPITLRYNEWHAAFIPRHDCTVGLIEETIIKCEVISENEEEPSSGTGLPKKGTTTVERNDEDSIANKISSEYQCPVCFKFFSNRSHYELHTRTHAKEPSSHKCEVCSKWYSSNANLQIHRRIHTGEKPYQCKVCSKGFTTSGILLRHTRRHTGEKRHQCPTCSKRFSTSGDLTVHIRTHTGEKPYQCQFCEKRFATNNGNFRRHINTHSGDKVSVKIYKCHVCLKGFGSKGNLQQHTMTHTGEKPFECDNCSKCFSQKGDLLKHTRTHTGEKPYKCQTCPKSYATYGDLQVHTRTHSGEKPYQCAVCSKCFSSSSHMLAHTRIHTGEKNFQCDVCTKSFLSGGRLRAHARTHMGDKPYECQLCTKCFSQKGDLQRHTRTHTGEKPYQCEVCPKSFSQNGDLVRHARTHSGEKPYPCAACEKCFSNRKHLQAHERRVHSGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-