Pgib009595.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020486.1:47747110-47757290[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.012 0.81 10.8 1.2 5 23 97 116 88 116 0.93 2 30 3.8e-06 0.00025 21.8 3.2 1 23 121 143 121 143 0.98 3 30 0.00053 0.035 15.1 5.7 2 23 148 169 147 170 0.95 4 30 3.1e-06 0.00021 22.1 0.5 2 23 178 199 177 199 0.97 5 30 1.5e-05 0.001 19.9 0.3 2 23 205 226 204 226 0.96 6 30 0.1 6.7 7.9 2.6 1 23 233 255 233 255 0.98 7 30 0.00025 0.017 16.1 0.1 1 23 261 284 261 284 0.96 8 30 0.0004 0.027 15.4 3.1 1 23 290 312 290 312 0.98 9 30 0.00028 0.019 15.9 8.2 1 23 319 341 319 341 0.98 10 30 0.00056 0.037 15.0 0.3 3 23 351 371 349 371 0.97 11 30 0.00018 0.012 16.6 2.4 1 23 378 400 378 400 0.98 12 30 2.7e-05 0.0018 19.1 1.9 3 23 408 428 406 428 0.98 13 30 5.6e-06 0.00037 21.3 4.6 2 23 597 618 596 618 0.97 14 30 0.006 0.4 11.7 3.1 1 23 624 646 624 646 0.96 15 30 1.9e-05 0.0012 19.6 0.1 1 23 652 675 652 675 0.96 16 30 0.002 0.13 13.3 0.5 1 23 681 703 681 703 0.96 17 30 0.075 5 8.3 7.2 1 23 709 731 709 731 0.97 18 30 5e-05 0.0033 18.3 1.0 1 23 737 759 737 759 0.98 19 30 1.2e-05 0.00081 20.2 0.2 1 23 762 784 762 784 0.97 20 30 0.0011 0.076 14.0 1.1 1 23 790 812 790 812 0.98 21 30 1.3e-05 0.00087 20.1 0.5 2 23 819 840 818 840 0.97 22 30 1.3e-06 8.9e-05 23.2 3.4 1 23 846 868 846 868 0.99 23 30 0.00024 0.016 16.2 0.2 1 21 874 894 874 895 0.94 24 30 1.9e-07 1.2e-05 25.9 3.0 1 23 1021 1043 1021 1043 0.97 25 30 0.0002 0.013 16.4 1.2 1 23 1053 1075 1053 1075 0.98 26 30 1.2e-05 0.00081 20.2 0.8 2 23 1082 1103 1081 1103 0.97 27 30 6.8e-06 0.00045 21.0 3.0 1 23 1109 1131 1109 1131 0.98 28 30 4.4e-05 0.0029 18.4 0.2 1 21 1137 1157 1137 1158 0.94 29 30 0.3 20 6.4 1.9 2 22 1164 1184 1163 1186 0.90 30 30 0.00018 0.012 16.5 0.0 3 23 1194 1214 1192 1214 0.97
Sequence Information
- Coding Sequence
- ATGTCAGCGTTGGATGAAATGGAAATGAAAGATGAGTTTGACGTCAGCAGTGCCGATGTAAAAATTGAAGAGATTGACGTCAGCAGCGGTCAAGCAAGCACATGCCAACAAGATACATCTGCTCAAGTAAAGGAAGCCTGCGGATCATCGTGGGGTTACACGGAAATAAGCATCGACAGTGATGATAGCACGGCAGCACATCAGCAAATTGCAGCTAGAGAGAGAAAGCAACGTGTCAGAAGAAAAACACAGCCTGTAATCTGCAAAAAATTGCCCTACGATCGCACTGAATGTCACCGCCAATTTGCTGACGCGACAACTCTCAACAAGCACACGAGAAATGAGCACGTTGTTACAAAATTTCCCTGCAGTCAGTGCGATCGGAGCTTCATGCGTAAAGGTCATTTAAGAATGCACATGCGTAATCACACGAGGGCAATTACATGTCGACAGTGCGGCAAACAGTTCAGTAGTGGTCGGCACTTGAAGGAGCACCGACGCACGCATCATGCGAGTGTTTCTGTCCCCATAGTTTGTGCTGTGTGTGGGAAAATTTTCTCAAAACAGGGTCATCTTAATTTACACATGAAATCCCATGCTGACGGGCCGTTGGTGTGTAGTGAATGTGGTAAAAAATTTGCAGCGAGATCCAGCCTTAACCGGCACGTTTTAAAGCATAGCGGCATAgagaagccttataagtgtaatgAGTGCAGTAGTTGCTTCCTCGAGAAGGCTTGGCTCATTCGTCATCTGAAATTCCATGCAGGAGATCGTCGTTACGCTTGTAAAGAGTGTGGCGAACAGTTTTCACTAAAGGGAACCCTTAGTGAGCATTTACGTGCGGCACATGCCGGGGCGAAGCATTTTGTCTGTAAACACTGCTTCAAAATGTTTGCGTTTGGCTCGAGTCTTAGCCGGCATTTGTTGACGCATAAAGAAGGTGCCAAGCCCCACGTTTGTAAACACTGTGGCAGGTCGTTTACGGTTAAATTTTGCTTAGACCGGCATCTGCGTACGCATGGAGAAGGCGGTGAGAAACCGTTTGGGTGTCCTTACTGTGACCGGCGCTACGATGACAGAACCGGTTTGAGTCGGCATGTTTTGTCGCATACTGGTGAGGCCAAGCCGTTTCCTTGTAGTGAGTGCGATAAGCGGTTTTTGGACAGAACTCATCTTAAAGGTCATTTGCGAACGCATTTCGGGGACAAACCGTTCGGATGCGAACTGTGTGACCGGCGTTATACGTTTAAAAGTAGTCTTAATTCGCACATGCGAAAACATGCGGTCGGCAACCCTGCTGAGACATCGGAAAATATTCTTGCCACTAGAGTGATCAAAGATGAACAAAAGCCGGTTGAAATAAAAACGGAACCTGAAGATTCTGATGCTGAAGTAGAAACATTCAAAATATCTCCCGATGATTCTGCAAACGAATCCTTCAATGGCAGTGGTATAGATGTTTTTGCTGCTGAAGTCGTTGAAGACGAACAAAAACCGATTGAAATAAAGTCGGAACTTGACGATTTTTATACCGAAGAAGAAGCTTTGAAAATATCTCCTGATGGCTGGTCATACGATAATGAAACccgaaacaacaacaaaacagtGCAACTCACCGAAGTTCATGATGTAAACGAATGCAACATAGATGTTGATTTTACTGGAATCATAGGAGACGATGACGAAGAGGAATACAAGAAATGTCCTAATGATTGGccatacaataataaaaatatgagCAATAGCGAAAATGTGCATCACACAGGAGTTAATGAAAAAGTCTTGAGCTGCAGGAAATGCAACAAGAGGTTTTCTAAAAAATCCAACCTCTCCCGTCACCTCAAAACACACTCAGATCTTAAGGCACATTCTTGCTCAAAATGCAGCAAAACCTTTTGGCGTAAAACATATCTGGCACGCCACTTATTGGGACACACAGACATCAAAGCCTACGTCTGTGCGCAATGCAATAAGTCATTCAACGATGCTAACGAGCTTAAGGAACACATCAACTTAGTCCATTGTTCCGCGACGCCGTACCCATGCCGACAATGCCGTAAATTTCTTCCTAGTAAATCAAGCCTTATGCGACATCTAGCGGCACATTCTAGCTCTAAACCTTTTGAATGCAATGAATGCTGTCTATGTTTTGAGAGGAAGTCGACTCTTTATCATCACATGCTGGGGCATTTCGGAATTGAGCCTCACACTTGCAGCCAATGCGGAAAGAGCTTTTTTGAACGAGCAGTGCTCATTGCCCACATGAACACCCATGAAAATTTTGTCTGCAGTGAATGCGGTCGTTCCTTCAGCGATGAAATACACCTAATTGATCATGCGCGTGGGCATACAGGCGTTAAACCCTTCACGTGTTACCAGTGCAACAGGGGATACGATTTAAAACGTAGCCTAGCGCGACACTTACGCATACACGACGCTGTAAAACCTATAGAATGCGCTGTTTGCTCTCGCCGTTTTGTTACGAGCGGCCATCTTGAAATTCATATGCGTTCCCATACTGGGATAAAACCTTTCAAATGTTGGCAGTGTGGAAAATGTTTTTCGTTAAATGGTAATCTAACTAAGCATAGGAGGGTTCATAGTGATGTGAAAGGACATGTATGTACAGGGTGTGGGAAGGCATTTAAGGATAAGAGGGCTTTTACCGGGCATTTGCAGGCAGGGGAACGCCAACAAAAGTATATTCTTGCCACTCAAGTCATCAAGGATGAACAAAAGCCGGTTGAAATAAAAACGGAACCTGAAGATTCTGATGCTGAAgtagaaacattaaaaatatctcCAGATGATTCTGCAAACGAATCCTTCAATTGCAGTGGTATAGATGTTTTTGCTGCTGAAGTAATTGAAGACCAACAAAAACCGATTGAAATAAAGTCGGAACTTGACGATTTTGAAATTAAGGCAGAAGTtgttgatgatgatgacgacgaaGAAGCATACAACAGATGTGCTGATGATTGGCCATACGATAATAAAACACTGAGCAAGAGCGAAAAAGCGCATCTCACAGGAGTTCTTGTAAAAGTCTTCAACTTCAAATGCACTAAATGCAACAAGAGCTTTTCTACTAAATCCAACCTCTCCCGTCACCTAATAGAGCATTCTCGTAGGGACACAGGCGTTAAACCCTTCACGTGTTACCAGTGCGACAGGGGATATACTTTAAAGCGTAGCCTAGCGCGCCACTTACGCATACATGACAGAGTAAAACCTATAGAGTGCGCTGTTTGCTCTCGGCGTTTTGTTACGAACGGCCATCTTGAAACTCATATGCGTTCCCACACTGGGATAAAACCTTTCAAATGTTGGCAGTGTGGAAAATGTTTTTCGTTAAATGGTAACCTAACGAAGCATAGGAGTGTTCATAGTGATGTGAAACAGCATGTATGTACAGGGTGTGGGAAGGCATTTAAGGATAAGAGGGCTTTCACCTGGCATTTGCAGGCTGGGGAACGCCAGCAAAAGTGTAAGCACTGTGCTGCGTTTTTTTACGTTAATTGTGACTTAATCAGACATATTGTGGATGAGCACCCGGAGGTTAAAAAGGTAATTTGTGGCCTCTGTGGGGGTGGTTTTGCAACCAAGGCAACTCTGTTGCGACATATGAGAGTTCATGGTGAAATGAAATGGTGA
- Protein Sequence
- MSALDEMEMKDEFDVSSADVKIEEIDVSSGQASTCQQDTSAQVKEACGSSWGYTEISIDSDDSTAAHQQIAARERKQRVRRKTQPVICKKLPYDRTECHRQFADATTLNKHTRNEHVVTKFPCSQCDRSFMRKGHLRMHMRNHTRAITCRQCGKQFSSGRHLKEHRRTHHASVSVPIVCAVCGKIFSKQGHLNLHMKSHADGPLVCSECGKKFAARSSLNRHVLKHSGIEKPYKCNECSSCFLEKAWLIRHLKFHAGDRRYACKECGEQFSLKGTLSEHLRAAHAGAKHFVCKHCFKMFAFGSSLSRHLLTHKEGAKPHVCKHCGRSFTVKFCLDRHLRTHGEGGEKPFGCPYCDRRYDDRTGLSRHVLSHTGEAKPFPCSECDKRFLDRTHLKGHLRTHFGDKPFGCELCDRRYTFKSSLNSHMRKHAVGNPAETSENILATRVIKDEQKPVEIKTEPEDSDAEVETFKISPDDSANESFNGSGIDVFAAEVVEDEQKPIEIKSELDDFYTEEEALKISPDGWSYDNETRNNNKTVQLTEVHDVNECNIDVDFTGIIGDDDEEEYKKCPNDWPYNNKNMSNSENVHHTGVNEKVLSCRKCNKRFSKKSNLSRHLKTHSDLKAHSCSKCSKTFWRKTYLARHLLGHTDIKAYVCAQCNKSFNDANELKEHINLVHCSATPYPCRQCRKFLPSKSSLMRHLAAHSSSKPFECNECCLCFERKSTLYHHMLGHFGIEPHTCSQCGKSFFERAVLIAHMNTHENFVCSECGRSFSDEIHLIDHARGHTGVKPFTCYQCNRGYDLKRSLARHLRIHDAVKPIECAVCSRRFVTSGHLEIHMRSHTGIKPFKCWQCGKCFSLNGNLTKHRRVHSDVKGHVCTGCGKAFKDKRAFTGHLQAGERQQKYILATQVIKDEQKPVEIKTEPEDSDAEVETLKISPDDSANESFNCSGIDVFAAEVIEDQQKPIEIKSELDDFEIKAEVVDDDDDEEAYNRCADDWPYDNKTLSKSEKAHLTGVLVKVFNFKCTKCNKSFSTKSNLSRHLIEHSRRDTGVKPFTCYQCDRGYTLKRSLARHLRIHDRVKPIECAVCSRRFVTNGHLETHMRSHTGIKPFKCWQCGKCFSLNGNLTKHRSVHSDVKQHVCTGCGKAFKDKRAFTWHLQAGERQQKCKHCAAFFYVNCDLIRHIVDEHPEVKKVICGLCGGGFATKATLLRHMRVHGEMKW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -