Pgib014495.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020488.1:32993203-33016343[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 53 4.6e-05 0.0031 18.4 1.4 2 23 14 35 13 35 0.96 2 53 0.0021 0.14 13.2 5.4 1 23 41 63 41 63 0.98 3 53 0.31 20 6.4 1.6 1 23 69 91 69 91 0.96 4 53 0.00061 0.041 14.9 2.0 1 23 97 120 97 120 0.97 5 53 0.0012 0.081 13.9 0.5 1 23 126 148 126 148 0.98 6 53 1.4e-05 0.0009 20.1 0.4 1 23 157 179 157 179 0.98 7 53 0.0024 0.16 13.0 0.1 1 23 185 207 185 207 0.97 8 53 0.00013 0.0089 16.9 0.3 2 23 214 236 213 236 0.92 9 53 7.2e-05 0.0048 17.8 0.6 1 23 244 266 244 266 0.97 10 53 0.00039 0.026 15.5 0.3 1 23 272 295 272 295 0.97 11 53 0.0015 0.097 13.7 0.6 2 23 425 447 424 447 0.91 12 53 0.034 2.3 9.4 3.3 1 23 450 473 450 473 0.96 13 53 0.063 4.2 8.5 0.0 2 23 481 503 480 503 0.94 14 53 0.00053 0.035 15.1 0.8 2 23 512 533 511 533 0.96 15 53 0.019 1.3 10.1 0.5 1 23 539 562 539 562 0.93 16 53 0.0016 0.1 13.6 5.7 1 23 566 588 566 588 0.98 17 53 6.3e-05 0.0042 18.0 7.6 2 23 600 621 599 621 0.97 18 53 0.00013 0.0089 16.9 0.2 1 23 628 650 628 650 0.97 19 53 5.7e-06 0.00038 21.3 1.1 1 23 656 678 656 678 0.97 20 53 1.5 98 4.2 1.1 2 23 739 759 738 759 0.96 21 53 0.046 3 9.0 3.6 3 23 768 788 767 788 0.94 22 53 0.027 1.8 9.7 4.9 1 23 791 814 791 814 0.97 23 53 0.71 47 5.2 4.1 1 23 821 843 821 843 0.98 24 53 0.002 0.13 13.2 1.1 2 23 850 871 849 871 0.98 25 53 0.34 22 6.2 0.4 1 23 877 900 877 900 0.97 26 53 0.0082 0.54 11.3 3.9 1 23 907 932 907 932 0.93 27 53 5.6e-05 0.0037 18.1 1.6 1 23 941 963 941 963 0.95 28 53 0.00052 0.034 15.1 0.4 2 23 970 991 969 991 0.95 29 53 9e-05 0.006 17.5 2.2 2 23 998 1019 997 1019 0.96 30 53 2.1e-07 1.4e-05 25.8 4.5 1 23 1025 1047 1025 1047 0.99 31 53 0.27 18 6.5 0.4 2 23 1087 1109 1086 1109 0.95 32 53 0.031 2 9.5 3.1 2 23 1111 1133 1110 1133 0.95 33 53 0.0039 0.26 12.3 0.2 1 23 1168 1190 1168 1190 0.98 34 53 0.017 1.1 10.3 0.1 2 23 1197 1218 1196 1218 0.97 35 53 0.00015 0.0097 16.8 3.5 2 23 1223 1245 1222 1245 0.96 36 53 0.00092 0.061 14.3 0.1 2 23 1254 1275 1253 1275 0.96 37 53 0.21 14 6.9 3.2 2 23 1281 1302 1281 1302 0.97 38 53 0.00026 0.017 16.0 1.2 1 23 1308 1331 1308 1331 0.96 39 53 5.6e-05 0.0037 18.1 0.5 2 23 1339 1360 1338 1360 0.96 40 53 0.0002 0.013 16.4 2.9 1 23 1369 1391 1369 1391 0.97 41 53 0.75 50 5.1 1.2 1 11 1425 1435 1425 1438 0.91 42 53 0.061 4 8.6 0.8 3 23 1493 1513 1492 1513 0.98 43 53 0.3 20 6.4 0.8 2 23 1616 1636 1615 1636 0.96 44 53 1 69 4.7 0.4 6 23 1647 1664 1643 1664 0.93 45 53 2.2 1.4e+02 3.7 4.7 1 23 1667 1690 1667 1690 0.93 46 53 0.0027 0.18 12.8 6.7 1 23 1700 1722 1700 1722 0.98 47 53 0.032 2.1 9.5 3.6 1 23 1728 1750 1728 1750 0.97 48 53 5.4e-05 0.0036 18.2 1.6 1 23 1756 1779 1756 1779 0.98 49 53 4e-06 0.00026 21.7 0.7 1 23 1786 1808 1786 1808 0.98 50 53 0.022 1.5 10.0 3.9 1 23 1818 1840 1818 1840 0.94 51 53 0.39 26 6.0 5.3 2 23 1847 1867 1845 1867 0.93 52 53 4.3e-05 0.0029 18.5 1.9 1 23 1873 1895 1873 1895 0.96 53 53 0.0038 0.25 12.4 0.6 1 23 1947 1970 1947 1970 0.94
Sequence Information
- Coding Sequence
- ATGTGTTGTGATAATTTCAGGAATTCTGTCAATGGTTGGACGTGTAAAATTTGTCATCGGGAATTTAGTAAGGCATATGAATTAGAACGTCATCAAATAAATCATTCGACGCATCGCCCGCATGTCTGTACAATCTGCGGAAGTAGCTTCAAACGTATCCACGATTTCCGCAGTCATACCCGTCGTCATTTAAATTCGCCTCGCTTCCAATGTTCGCGATGCCCAGCCAGTTTCCACATACGCTCGCGCCTTCGCATCCACGAAGATCGCCATTTTTCTCGTTTTCACCATCGTTGCGTTGACTGTGGCCGAGACTTTCACACGCGCAGTGAGCTAGCAGTTCATGCTAATACTAAACATGCTTCTTTAGGTCCATATAATTGCCCCCAGTGTCCGCGAATTCTGCCGCATAGGCTAGGTCTGCAAAAGCACATTAAGACGCATAATCCAGACTATGTACCCAAACGTTATAGCTGCAAGTTATGCGGGAGGGTTTACACTGCGAAATCGTCGCTAAATATTCACATCTCAACTCACAGCAGCCAAGAAACGTTCATGTGCGATATTTGTGGGAAGCAGTTAGGCTCTAAGGGGTCCCTTTTATCCCATTTACAAGCTCATGGGAAAACACAAATATGGCGTTGTAATGTATGTTTAAAAGAATTCTCTCGGAAGGCCAACCTGAAAGTCCATCAGGTGAATATTCATGAGGCACCTGGCTTCAAGCAGCACATTTGTGAAATCTGTGGAAATGGTTACAGTCAGAAGTCTTCCCTTTCTGTTCATTTGCGTTCGCATTCAAATTCAAGACCTTTTGTTTGTGATACATGTGGTTCTGGTTTCGCAACAAAGAAACAAATGACAGCACATATTAAGTCGTCGCATTCATTGAGCTTGCTTCTGCCCATTTCTCGTAGGCAAATTAACGTTCCATTGACCCCTTCAAGACGTACTGGAGCTCCTCGTCGGACATTTTTCACTGCGTATAGGAACTACCGCCTAAAGAGATCGGGGAAAAATGGTCGGAGAGCCAATGCTGTGTCTGGAAAAAAGGATATGGAGTCTTACACTTACCTTGAgccagaaataaaaattgaagctGAGGTAAAAATTGATGCAGGTCATGACATTCCGGTTAGTGGGAATATTCTTCAGAACACTTCGTCCCCGGCTCAATCACGGAAAGTCAGGTGCACCCTATGTGGGGAAATGATTCTTCTAAGCAGTTTGGAAAAGCACAAAATTCTTGAAGAAATGTACTTGAATGCTCTTACATGCTTGACGTGCGGACTGACATTTACGAAAAAGTCAGCTTTTCGTATTCATATCTACGAGCAGCACAAGGTTTACCATTGCAAACTGTGCTCAGAAGTATTCAGTAAGCGCCAACTTTATAGAACACACGTTGAAATGAAACATGGTTCCCGCAAAACAAGAGTCCCTTGTGAAATTTGTGGTAGATACCTGGCTAATAATCAAATACTTAAAAGGCATATGAATGAAGTACATTTTGGTCAACGTGAAGCAGACTTAAAATGTCCTCAATGCGACTACCGTTCGTACAACCGTTCCAATTTAAAGGTTCATGTCGACAAGCACAACAACACACCTGCGTTCGTTTGCGACTTGTGCGGTACTGGCTGCTTCACGAAAACCTCATTAAACGATCATGTCGCCAATGCCCACGGCCCAGGTTTTAAATGCCCGTACTGTTCGAAATGTTATAGAAATGAATGCAGTCTGAAAGGTCACGTTAAGATTCACGAGCCTGGTTTCGACCCTTCTACCCTGAGACAGCAATGTGAGCACTGTGGAGAATGTTTCAATCATAAAAGCTCCCTTAATAAACATCTTTTAAAGCATTTAGGGTTGGAAAAGACGTTTGATTGTGATGTTTGTGGCAAGAAGGTGAGTTCAAAGGGGTCATACCGCTCCCACATGGCCATTCACAGTGGTTACAAGCCGTTTGCTTGTGAATATTGTGATAAGCGGTTCGCTGACCGGCAATACCTGACCCAACACAGGAGGGTCCATACGGGGGAGAAGCCATACAAGTGTGAATGTGGCCAGACTTTCAATCAAAGtgaTGATAACCTAATTGAAACATTCTCTTTTTGGCTCAACGAAGAAAAGGGACAAATTAAACAGAAGCGAGCAAAGTCTGCGGCATTCTGGAAGAAGCCGCTCGCTTACCTCTATGTCAACCCCACCATGCGTTGCGAGTTTTGCGGTGTCATTTACAAGGAGGAAGAAATGGTCCATCATCGACGAACTCATCCCGAATTTAGGGAAGCTAGACACTGCTCGccatgtaaaaaaaactttacgaGTCAGACTTCGTTGGAAGTGCACAGCCGCAAGCATAAGATATTCGTATGCACTTCTTGCAACAAAGATTTTAATCCCCGTTCCCGTTACACGAAACATATCAAACGCTGCCACGGAAATCTGCCTAAACCGCACCAATGTTCTATTTGCAAAATGAGATTTCTAGAAAAATTCGAGCTCAAAATGCATTCAAAAACTCATGCGGGGGTGAAAGAAAAACAGTGTCCTAAGTGCCCGTATGCCACAAACAGCACTACATATTTATCAAGACACATAAAGAAACACGACAATGAATTCTCATTTCAATGCAGTATCTGTCTTCAAGGCTTTCTCGCCAACAACCAGTTGAAGGCTCACTTAAATAGTAAACACGGAGACGGAGGCGAATTGCACCCATGTACTCATGAATCCTGCAGTAAAACATATACTAGTAGGGGAAATTTGAATGAACATATAAAACGACGACATGTGCCCGGATATACGGAGAAAACCCACATCTGTGAGGAGTGTGGCAAAGCTTTTCCTCGTAAACACAGACTTGAAAAGCATCTGCTGGGACACAAAGGCTTGTATGCCCTAAATTGCGTCTACTGCTCCAAGGGATTCACTTCTAAAGTTTCTTTGGAAAATCATGAGAAGATTCATACTGGCGAGAAAAATTGCATATGCGAAACTTGTGGAAAAAGGTTTTCCGCTCAGAAATATCTTACTGTTCATCTTCGGTCGCACACTGGAGAGAAGCCTTACAAGTGCTCGGACTGTGAGAAATGCTTCACCCAGCAGTCCTCCCTTACAGTCCATATGAGGTACCACACCGGCGAACGCCCgaCAATAGAATTAAATGTGAAGATTGGCGAACAACAGAAGTTGGACGAACCGAGACGAAAGCGCTCCAAAAAGAGGAAGAGATGCGACACTGAAGGGGCTGTGCGTTGTGAGTTGTGCTCACGCAGCTTTCACTCCGAGGTGGATGCAATGGACCATCAGCTCATGGATCATGTTCAGTGCGACATTTGCGAGCAGTGGTTTAAGCGTAAATTTCATCTCAAGAGTCATTATAAAGAAAAACACGGAAATGCAAATGAGAAATGTTGTAACATATGTTCCAAAAAATTCTTATCACACATGTCCAGGTGGTTGCACACCAAAACTGTGCATGAAAACAGCTGGAAATTTCGTTGTTCTGAATGCGATTACGGTACTTCTCAAGAGGCCTTATATGAAAATCACATTGAGAAACATAAATCGCCATCAAATATGACATGCGGGGTGTGTGATCAGGAATTTAAAAGCTGGTGGCGTTACGATGTCCACATTAAAATACACGAACAAAGTCTAAAGTGTCATGTTTGTAATAAAGAGTTTGATAAACGGAAAAATTTGCTGAGACACATTTCAAGGAACCACGTAGTCAAAAAAGAACGGAATGTGCCCTGCACCGtatgtaataaattatttttcgatAAATGGGCTCTTCGTGTTCACATGGAAATTCATAGCAATCCTAAAGAACAATGCCCCTATTGTTTATACGTTACTTGTCACCCGAAGAGTATGAAAGTTCATGTTAAAAACCACATCAAAAACTTCGATTATGTATGCGAGCACTGTGGCCGTGGATTTGTTTACAATTTCATGTTGAGGGATCATAGAATTAAGGAACATGGAGAGGGGGCACCAAGAATACCTTGTACAATTTGTAATAGATCCTTTGCCTCCCAGACTTATCtcaatattcataaaaaatctCATGAAGCTGGCTACGAAGACAGGAATCACCAGTGTGACAAATGTGGCAAGAAATTCTTGACGAGGAGCATGCTCTTACGGCATCTTCGAGGTCATTCTCGGGTGGTCGATTACTTGTGCCGGTTCTGCAATAAGGAGCTGTCTTGTTTGGCCACACTTAAGGACCATGAGAAAATCCATACGGGGGAGAAACCCTTTATATGTGAAATGTGTGGACGGTGTTTCTCTGCTAGGAGATTCAACTCCATTATATCGCTTCAGTGGCTGGAAGAAGTAACAGACTCCTCTTTGGGGTTGGTAGATCTGCCATCACTAGAGGCAGGTCTGACGTTGACAACAGCCTTATCTGAGACTGATGTTCTAACTCTCTGGGAAAAATGCGCGCGCGGGAAAAATCTGTGCGTGGTCTGTCAAACGCACTTCCCGACCAAGACTGCTTTCGAGGGGCATGCTAGAACCCATCGCCTGGCAAGTTGTCAAGTTTGTGGCAAGGTTTGCTCGACAGGTCTTCGggaaGTCTTAAAATTTTGGTGTGAAGATTTTGAAATAGTCGAAGCACCCATCTGGCTGTCTGATAAGGACGAACTCCCTCTGAAAAGTGGCAGTGAGGTAGATGAAACCAGAGTTTCAATTAGTACTCAGGAAGCAATAGAAGCTGTGGTCCCAGCCCAAGGCGAAGAATCTGCGGCTTTGAAGACTGAatcaaaaaaaatgaaaaacaagacTGGCAAGAAAATACAGCGCCCCATAGAATACAATTATCCGCAAAAGTGTGAATTTTGCGGTCAAGTGTTTCTTGAAAAAGACATGATTCGTCACAAGAAAGTTCATCCCGAATCGTTCACCTTAGACTGCGTCCCATGTGGGAAGTTTTTTCATTCCAAAGCTGCGTACGATCTTCATTACAACATTCATAAGATTTACCATTGTATCGAATGCAAGAGAGACTTTAACGCTAGAAAACATTATAGAAGTCACATGGAACGTATTCACAAAGCTCAAGGCGAGAGACCGAGAATTCACGAATGCGAATTATGCCACAAAACTTTTAAAGATAAATTTGTATTGAACACGCACAAAAAAACGCATTACAATATTAAGGCTCATAAATGCCCCATGTGCGATTATGCCTGTAATAACTTGACATATATGCGTCAACATGTTATGAATCACACAAATcaagtacaatttaaatgtcaTATTTGTTATAGAAGCTTTATTTCAGACGAGCAATTACAAGCCCATATAAATAAATTGCACAGTGATGAGCCGCAGCTGTACAGTTGTGACACGTGTGGGAAAATATCAACCAGCAAGGGCAATCTTCGACAGCATCAGAGAATACACAACCCAGAATACCAGCTGAAAAAGGACCATCAGTGCTTTGAATGCGGCAAAACATTTGCCCTAAGATGTAGGCTTCGAAAACACGCCCTGGCCCATAAGGGGCAGGACAAATGTCACTGTAATATTTGTGGTCGCATGCTTTCGAGAGATTCGTTTAAAAAGCATTTGAAAGCTCATAAAAATTTGAAGTTGTACCTTTGTGAATTTTGCGGTGAGTCTTTTGCGACCAACAGCTGTCTGACGGCTCATAAGCGTTCTCATTTTGGGGAAAAGCAAACCAGTAACTCACCTAAAACAGCGGATTGCGTCAACTGCGATAAACCGACAGATAATGCGCTGTACCTCCAGCAAAAAGTCTCCGGTAGTTGTATGTCACATAATCATTATGAGAAGAAGGTGTGTCAGCTGCATAATTTTGCATGCGATTTATGTGGAAAAACGTTTGATCAGCATAGTGTTATGGTTGCTCATAAAAATATCTACCATGCTGCTGAAAGACCTTTCACCTCCTACTTTATAGCAACCTATGCTGCTCAACAATGA
- Protein Sequence
- MCCDNFRNSVNGWTCKICHREFSKAYELERHQINHSTHRPHVCTICGSSFKRIHDFRSHTRRHLNSPRFQCSRCPASFHIRSRLRIHEDRHFSRFHHRCVDCGRDFHTRSELAVHANTKHASLGPYNCPQCPRILPHRLGLQKHIKTHNPDYVPKRYSCKLCGRVYTAKSSLNIHISTHSSQETFMCDICGKQLGSKGSLLSHLQAHGKTQIWRCNVCLKEFSRKANLKVHQVNIHEAPGFKQHICEICGNGYSQKSSLSVHLRSHSNSRPFVCDTCGSGFATKKQMTAHIKSSHSLSLLLPISRRQINVPLTPSRRTGAPRRTFFTAYRNYRLKRSGKNGRRANAVSGKKDMESYTYLEPEIKIEAEVKIDAGHDIPVSGNILQNTSSPAQSRKVRCTLCGEMILLSSLEKHKILEEMYLNALTCLTCGLTFTKKSAFRIHIYEQHKVYHCKLCSEVFSKRQLYRTHVEMKHGSRKTRVPCEICGRYLANNQILKRHMNEVHFGQREADLKCPQCDYRSYNRSNLKVHVDKHNNTPAFVCDLCGTGCFTKTSLNDHVANAHGPGFKCPYCSKCYRNECSLKGHVKIHEPGFDPSTLRQQCEHCGECFNHKSSLNKHLLKHLGLEKTFDCDVCGKKVSSKGSYRSHMAIHSGYKPFACEYCDKRFADRQYLTQHRRVHTGEKPYKCECGQTFNQSDDNLIETFSFWLNEEKGQIKQKRAKSAAFWKKPLAYLYVNPTMRCEFCGVIYKEEEMVHHRRTHPEFREARHCSPCKKNFTSQTSLEVHSRKHKIFVCTSCNKDFNPRSRYTKHIKRCHGNLPKPHQCSICKMRFLEKFELKMHSKTHAGVKEKQCPKCPYATNSTTYLSRHIKKHDNEFSFQCSICLQGFLANNQLKAHLNSKHGDGGELHPCTHESCSKTYTSRGNLNEHIKRRHVPGYTEKTHICEECGKAFPRKHRLEKHLLGHKGLYALNCVYCSKGFTSKVSLENHEKIHTGEKNCICETCGKRFSAQKYLTVHLRSHTGEKPYKCSDCEKCFTQQSSLTVHMRYHTGERPTIELNVKIGEQQKLDEPRRKRSKKRKRCDTEGAVRCELCSRSFHSEVDAMDHQLMDHVQCDICEQWFKRKFHLKSHYKEKHGNANEKCCNICSKKFLSHMSRWLHTKTVHENSWKFRCSECDYGTSQEALYENHIEKHKSPSNMTCGVCDQEFKSWWRYDVHIKIHEQSLKCHVCNKEFDKRKNLLRHISRNHVVKKERNVPCTVCNKLFFDKWALRVHMEIHSNPKEQCPYCLYVTCHPKSMKVHVKNHIKNFDYVCEHCGRGFVYNFMLRDHRIKEHGEGAPRIPCTICNRSFASQTYLNIHKKSHEAGYEDRNHQCDKCGKKFLTRSMLLRHLRGHSRVVDYLCRFCNKELSCLATLKDHEKIHTGEKPFICEMCGRCFSARRFNSIISLQWLEEVTDSSLGLVDLPSLEAGLTLTTALSETDVLTLWEKCARGKNLCVVCQTHFPTKTAFEGHARTHRLASCQVCGKVCSTGLREVLKFWCEDFEIVEAPIWLSDKDELPLKSGSEVDETRVSISTQEAIEAVVPAQGEESAALKTESKKMKNKTGKKIQRPIEYNYPQKCEFCGQVFLEKDMIRHKKVHPESFTLDCVPCGKFFHSKAAYDLHYNIHKIYHCIECKRDFNARKHYRSHMERIHKAQGERPRIHECELCHKTFKDKFVLNTHKKTHYNIKAHKCPMCDYACNNLTYMRQHVMNHTNQVQFKCHICYRSFISDEQLQAHINKLHSDEPQLYSCDTCGKISTSKGNLRQHQRIHNPEYQLKKDHQCFECGKTFALRCRLRKHALAHKGQDKCHCNICGRMLSRDSFKKHLKAHKNLKLYLCEFCGESFATNSCLTAHKRSHFGEKQTSNSPKTADCVNCDKPTDNALYLQQKVSGSCMSHNHYEKKVCQLHNFACDLCGKTFDQHSVMVAHKNIYHAAERPFTSYFIATYAAQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -