Pgib019888.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Psococerastis gibbosa
Gene Symbol
-
Assembly
GCA_963971405.1
Location
OZ020490.1:30610928-30636381[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 52 0.0014 0.096 13.7 1.0 1 23 55 77 55 77 0.98
2 52 9.7e-07 6.4e-05 23.7 1.9 1 23 83 105 83 105 0.98
3 52 0.00017 0.011 16.6 2.3 1 23 111 133 111 133 0.98
4 52 0.00015 0.0098 16.8 0.5 1 23 139 161 139 161 0.96
5 52 0.00038 0.025 15.5 3.6 1 23 167 189 167 189 0.99
6 52 1.1e-05 0.0007 20.4 0.8 1 23 195 217 195 217 0.95
7 52 1.5e-06 9.7e-05 23.1 1.3 1 23 354 376 354 376 0.99
8 52 4.1e-05 0.0027 18.6 0.3 1 23 382 404 382 404 0.96
9 52 9.4e-07 6.3e-05 23.7 0.3 1 23 410 432 410 432 0.98
10 52 9.2e-06 0.00061 20.6 1.4 1 23 438 460 438 460 0.98
11 52 0.0001 0.0068 17.3 2.2 1 23 466 488 466 488 0.99
12 52 0.0002 0.013 16.4 0.3 1 23 494 516 494 516 0.99
13 52 0.0046 0.31 12.1 5.4 1 23 522 544 522 544 0.97
14 52 1.8e-05 0.0012 19.7 1.0 1 23 550 572 550 572 0.97
15 52 0.24 16 6.7 0.2 1 11 578 588 578 591 0.89
16 52 1.8e-05 0.0012 19.7 4.6 1 23 637 659 637 659 0.98
17 52 0.002 0.13 13.2 0.4 1 23 665 687 665 687 0.97
18 52 0.052 3.4 8.8 1.2 1 23 693 715 693 715 0.95
19 52 0.0018 0.12 13.4 0.2 1 23 725 747 725 747 0.98
20 52 0.00039 0.026 15.5 2.0 1 23 750 772 750 772 0.96
21 52 0.0015 0.099 13.6 0.6 1 23 778 800 778 800 0.97
22 52 2.1e-06 0.00014 22.6 0.3 1 23 806 829 806 829 0.97
23 52 0.0012 0.077 14.0 1.5 3 23 836 856 835 856 0.98
24 52 3.7e-05 0.0024 18.7 0.8 1 23 862 884 862 884 0.98
25 52 0.00019 0.013 16.5 0.7 1 23 892 914 892 914 0.98
26 52 0.2 13 6.9 0.6 1 23 920 943 920 943 0.94
27 52 2.2 1.4e+02 3.7 5.2 1 23 971 994 971 994 0.96
28 52 0.00018 0.012 16.5 0.4 1 23 1000 1022 1000 1022 0.98
29 52 0.0003 0.02 15.8 0.3 1 23 1028 1050 1028 1050 0.98
30 52 0.072 4.8 8.3 4.0 1 23 1056 1078 1056 1078 0.98
31 52 0.01 0.68 11.0 0.5 1 23 1104 1126 1104 1126 0.99
32 52 0.00022 0.014 16.3 1.9 1 23 1146 1168 1146 1168 0.95
33 52 8.4e-05 0.0055 17.6 0.4 1 23 1198 1220 1198 1220 0.95
34 52 0.0025 0.17 12.9 0.8 2 23 1251 1272 1250 1272 0.94
35 52 0.00013 0.0083 17.0 0.5 1 23 1333 1355 1333 1355 0.99
36 52 1.3e-06 8.4e-05 23.3 0.7 1 23 1361 1383 1361 1383 0.98
37 52 0.00056 0.037 15.0 3.2 1 23 1389 1412 1389 1412 0.98
38 52 0.042 2.8 9.1 1.3 1 23 1418 1440 1418 1440 0.97
39 52 5.9e-05 0.0039 18.1 1.3 1 23 1446 1468 1446 1468 0.98
40 52 0.00041 0.027 15.4 2.4 1 23 1476 1498 1476 1498 0.99
41 52 0.00018 0.012 16.5 3.1 1 23 1535 1557 1535 1557 0.98
42 52 0.00023 0.015 16.2 4.0 1 23 1563 1585 1563 1585 0.96
43 52 0.015 0.97 10.5 3.2 1 23 1591 1614 1591 1614 0.95
44 52 0.025 1.7 9.8 1.3 1 23 1621 1642 1621 1642 0.96
45 52 0.0012 0.081 13.9 3.7 1 23 1646 1668 1646 1668 0.97
46 52 0.0055 0.36 11.9 11.2 1 23 1679 1701 1679 1701 0.98
47 52 0.001 0.069 14.1 1.7 1 23 1707 1729 1707 1729 0.99
48 52 2.5e-05 0.0017 19.2 1.8 1 23 1735 1758 1735 1758 0.94
49 52 2.2e-05 0.0015 19.4 1.5 1 23 1761 1783 1761 1783 0.99
50 52 0.059 3.9 8.6 0.8 1 23 1791 1814 1791 1814 0.94
51 52 0.14 9.6 7.4 0.1 2 23 1816 1838 1815 1838 0.88
52 52 3 2e+02 3.2 0.3 1 23 1893 1914 1893 1914 0.87

Sequence Information

Coding Sequence
ATGAACGCAGAGTACCCAGGTACCCTGGAAGAAGATGGGGAAGACCAAACGACATATTCCGGGAAACAGCAAGGGGATACTGATCGTGGATTGAAAAATGACCCGGAAGAACCTGATAGCCGTAAGTTCAACAATGACCAAGGGATGCCTCCGAAAGGAAGACACCAGTGCAGCATGTGTGACAACTTATTCAGCAGCATTGGCGCCCTCAAGGCACATACAAGAACCCATACAGGCGAGAGACCTTACAAGTGTAACCAGTGTGAAAAGGCATTCTCACAGAAAGGCCACTTGAACGCCCATATGAGCTTACATGGAGAAGCGCGCCCCTATCAATGTTCCACATGCCAAAAAGCGTTCTCGATCAAAAGCTCCTTTATTCGTCATAATCAAACACACATGGACGGCCCAAGGTATCTTTGCAGAGAGTGTCCGAAATCGTACACCCAGAAGGCAGGCTTAGATTACCATATGCAGACACAtacgggggtaaaaaaataccAGTGCAGCCAATGTGAGAAAAGTTACTCATCGAAAGTTTCTCTAGATTATCACATGTGTTCACACACGGGCGTTATCCCTTTTAAATGTGGCGGGTGTGATAAATCGTTTAAATCTAAAGATAAGCTGAAAAGTCATGCAGGAGTACATATGGTTGAAATAAAAGTGAAAACTGAAGAGACCGGGACCTGTCTGAAGGAGGAGCCATTATATTCCTCTAATGAAATTGTGCTGACTGTGGATCTGGCTAAAGTGAAGGAAGAACCCAATTCCGAAATTGGTGAGGAACGTGGCTCTAACAGCGTGCTGGCGGTGATCGTGGCAGAGAAGGAAGATCCCGTTATTGTAGATGTCAAAGTTGAATGTTGCGCAGGTGACGTGCTTCCGGGGAACATGGGACTGAAGGAGGAGACCATTGTAGATGTCAATGTTGATCGTTGCTCAGATGGTGATGATGAGGTCTCACCTAGTTGTAGCCGCGACGGCGTGTCTAAACACACCACAGGGATTGGCTCAAAAGAGATCAGCGGCCAGAAAAATAAACGTGTTTGTAAACAATACAAGTGCAGTGAGTGTAACAAGTCATATATGCAGAAGGGGAACCTCGACGCTCATATGCGCAAACATACACAGGGTACACCGTACGTGTGTATAGTGTGTGGAACGGCCTTCAGCAAGAAATCCGATCTTACCATTCACACTAGAACACATACTGGTTCTAGGCCATATATGTGTAGTGTGTGCCAGAAACCTTTTAACCGCAAATACGCTCTTATCGTACATATGAGAGTTCATACAGGCTACAATCCTTTTGTATGCAAATTGTGTGCCAGGTCTTTCAGTGAGAACAGTAAACTTAGACGTCACATGTTAACCCATGCGGGCGATAAACCATATGAATGCACTGTTTGTGACCAGCATTTTATGCGTAAAGACCGCCTTGACGTCCATATGAGAACCCACACTGGGGAGAAACCTTATGTGTGCAGTGTCTGCGAGAAAGAGTTCATTCTGAAAAATGTCCTGAATCGTCATATGCTTACTCATATAGGGGAGAAGCCGCATGTGTGCAGTTTTTGTGATAAGGCGTTTAGCCTGAAATGTCATCTTAACGTTCACCTGGGTACCCATAGAGGGGTTAAACCACATATTTGCAATGTGTGTGAGAAACCGTTTTATCTGAAAGGTAATCTCAGAATTCATATGCGAATGCATACGGGGGAGAAGCCTTACAAGTGCAGTGTGTGCGACAAGGCGTTTATTGAGAATGACTTCGAGTGGTATGTTGTCAATGAAGAAAATGTTGAGACAATAATTTGTGACGATCCGAGCGATGCTGCTAAAAATGGTGAAACGGGAGCAGAGACAAGTCGGCCGCTGTTTAACATAAGACCCCCCAAAATCCCACACGTCTGCAATGAATGTGGAAAGTCATTTAAGACCGAATGTCGACTCACCAGCCATATGCGGGTACACACGGGAGAAAAACCCCACGTCTGCAGTGTTTGCCAAAAGGCATTTGCACTTAAGGTGAGCCTTGACAGCCACATGACTATTCATACTGGTGAGACGCCTTTCATGTGTACGTTGTGTAACATGAAGTTTCGGACGCAGGCTCTAGGTAAACGCCATTTAAGTTTACATGTAAAAGAACAACCGAATCTTGCAGTGTTTATGTGTACTGTTTGTGAAACGATCCTTACCACGGCAGAAAGACTTGAAAAACACATGCTAACTCATACCCAACATGCGTGCACCATGTGCGAGAAAGTGTTTACTGAGAAAGGTAAATTTGAGACTCATATGTTAAGACATAAAGGGGAGCGGCGTTACAAATGCAGTGTATGTGAGAAGGCGTATTTCAAGAAATCAAGTTTGGACACTCATTTGATAGCTCATTCTGACGTGACACCGTACGCTTGCGACCAATGTCCAAGGTCTTTTAAAACGAGTGCTGCACTTAAAAAGCACATAAAAAGTATACATACAGTTAAACCGAATGCGTGCTCCATATGTAAAGCTTCATATGACCATAAAGAGAGCCTTGATAATCATATGAGAAAACATAGTGGAGAGAAACCGTTTAAGTGCAGTCAGTGCAAAAGGGCTTTTGCACAGCAGAACTTCCTTCTTGCTCATATGCGAGCACATGTGCTTTCTAAGGAAAAACGGTTCATGTGCAGTAAGTGTCCGAAGGCTTTCAGTTTGAAAAACTATTTGGATAATCACATGATCTCACATTCAGCACCTAGGCCATATGCGTGTAGGATATGTCCAAAGCGTTTTTTAACCGTGTACAACTTGAATTTTCACATGGCTAAATCGCATAGTTTTTTGAAACGGATTGAGCCCAACCAGCGTTTACCTGATGCTCGTTATGAGGTAATATCACATTCAGGTGTTAAGCGTTTTAAGTGTACTTTATGTCCTTGGACCTGTAGCTGCCAATCAAGTATTTATCGTCATATAGATAAGAAACACCCAAGTGCGAAACCGTTTGTCTGCAGTCTATGTCCAAAGTCGTATACACAGAAGGTCTTCCTGGATTCTCACATGCTAGTCCATGCCTTAAAGAACCGGTTTGTATGCAGTTTGTGTCCGATGTCGTACGCCGAGAAATATTACCTTGATGATCATATGCGAACGCATAGAGGAAAACAGCGATTTTCATGTAGTTTATGTCCAAAGACATATCTTAAACGACAGACCCTCAATCATCATTTGAAATCGCATCCTGAAAGTCATAGTGTATATAACCAGGATACCCTTGAACTTGATAATCTACTAAAAGAGTCAGAACAGAAGCCGTTCCAATGTAGTTTATGTTTGATGTCATTTGCGCTGCAACAAGAGTACAGTAATCATATGGCAACACATCCTGTTGGTGGTAAATTGCCTCAAAGTAGTATACCTACATTTGGAGAACATAGAACCTTTCTATGTAGTCTGTGTCCAGAGTCGTTCGCATACAAGCGAGATCTTAGCCATCATATGAAATCACATTCCGTTGGTAAACATTTCGCGGACGCTTATGCCCAAGACGATCCCATTGATTATAATGATAGGGTGACACTCGGAGAAGATAGACCCTTTCTTTGTAGTCTGTGTCCAGTGTCGTTCGCAAATAAGCGAGATCTCAACGATCATATGAAATCACATTCCGTTGGTAAACATTTGGCGGAAGCCTATGTGCAAGATGATCCAATTGATTATAATGATACGGTTACGCACGCAGTACATAGACCCTTTTTGTGCAGTGTATGCATGGGGTCGTTCACACAGAAGCAAGACCTAATTCGCCACATGAAATCACATGGCGATGATTATGATAACGATGATATGTCTATGGATGTGGAACCTTTCAGCCATGATGACGATCCCCTTGGTTTTGATATGCCGATACATACAAGAAATTACCCGAGTCCTAATAAAACGTCTACTACACGCAAGCGTAAAATTAGCGCTTCTAAAAAGTTGCCTACTAATGAAAAACGGTTTAAGTGCCACGTTTGTGAGAAGGCTTTTCCCTCTGAGGCTAAACTGGTTGGTCATTTGAGAAGCCATACTGGGGAGAAGCCCTTCAAGTGCAGTCTATGTCCAAAAGCTTTCACCCATAATGGGAACCTCACGGCGCATTTATTAATACATACAGGTGAAAAACGGTATGTATGCAGTATGTGTCAGGTGGGGTTTAATCAGAAAAATTGTTTAGaaaaacacatgaaaaaacagCATCCGTATTTTCAGCCATATGTATGCGAAACGTGTAATAAAAGCTTTTTAATGAAAGACCCATTTGAACGTCACAAATTAAAACATGCTGGTATCAAACCATTCAGCTGTCCTTTGTGCCAGAAATCCTTTACATACAAAGCTCTCTTTGATATACACTTGCGTAAGCATGCGGTCATGACTCCGCCTTCTTATAAGTGCAAAGAGTGTAATAATATGTACACAACTCAAATTAGACTGAATCGTCACGTTAAAACACACAGAAAGGAACCGCCTTATATGGTCACGTATGAAAACGTAGAAAACGGCGAGGGTAATGTAACCCATAAAAAGGGTGGTAAAGCGTACATGTCTAAATATAGGGTTAGATATAGGTGTGGGCTGTGCGAGAAGAGTTTTACACAGAAAAGTAGTCTACAATGTCATGTGCGAGTACACACCGGGGAGAAGCCGTTCTCGTGCGAAACGTGCGACAGGACTTTTACCTATAGAAGCCACTACAAATCCCACGTCCAGGCACACACGGGTTTAAAGCCGCATAAGTGCAACATCTGCAGTAAATCATTTGCAAGTAAAAAAAGTCGTGATTTACATTTGCTCCGAACACATGCAGATGTTGAGAAAACATTTCAATGCGAGGAATGTCAATTGATGTTTACTTTTTTTGGCCTTAAGCGACATATGGTTTTACATACCAATAAGTACAAATGTGACAAATGCAATAGGCGGTTTGGAAGCAAATTTCATCTTGACAAGCATGAGTTAATACATGTTAACAGAGTTGGGACACTAGAGAAGTGCCATAAATGTCATCTATGTGAAAAGTCTTTCTTTCATAAGAGCTCCCTTAACCACCATTCACGTATCCATACTGATATTAAACCATTTAAGTGCAACGTATGTGATGCAGctttctattttaaaaatacCCTAAATAGTCACTCAAAAACTCACACACGTATTAAGTGTCACAAATGTAAAATTTGTGAAGAAACTTTTACCGACAGAAAGGACCTCATGCGGCATCAGCTTGCATCACATAAGCGGTATAAGTGCAAGGAATGTCCTTCGAGTTACTATAATAATTCTGGCCTTAGGCTGCATATGCGAAAACATTTTGAAAGTTTGAAAGCTCCGTACGAGTGTAGTTTTTGTGATTTAAAGTTTGCGGTGACTCAGTCGCTTGATAATCATATGTTTCTTAAACATTTGATTTGTCGTGTGTGTGACAAGATCTTCGACGAGGCAAAGGACCTTTACTCGCATAACATGGCGGAACATAGTAAAAATGATAAGTGTACCTTGTGCAATGTTACCTTTACCGAAGATGATGTTCATGGGTACAGCCGTGTGCTTTTGGGTGGTAGTGTGTATTTGTGTAAGTCGTGTGATATTAAATGTGAGATTGAAGAGCCGATCGGTGAAAATGACGAGGAAAATGAGTATGAGTGCCGTTTGTGTAGCGAATCGTTTGGTTATAACGGGATTTTAAGTCATATGGAAACGCATAGAAAaaggtaa
Protein Sequence
MNAEYPGTLEEDGEDQTTYSGKQQGDTDRGLKNDPEEPDSRKFNNDQGMPPKGRHQCSMCDNLFSSIGALKAHTRTHTGERPYKCNQCEKAFSQKGHLNAHMSLHGEARPYQCSTCQKAFSIKSSFIRHNQTHMDGPRYLCRECPKSYTQKAGLDYHMQTHTGVKKYQCSQCEKSYSSKVSLDYHMCSHTGVIPFKCGGCDKSFKSKDKLKSHAGVHMVEIKVKTEETGTCLKEEPLYSSNEIVLTVDLAKVKEEPNSEIGEERGSNSVLAVIVAEKEDPVIVDVKVECCAGDVLPGNMGLKEETIVDVNVDRCSDGDDEVSPSCSRDGVSKHTTGIGSKEISGQKNKRVCKQYKCSECNKSYMQKGNLDAHMRKHTQGTPYVCIVCGTAFSKKSDLTIHTRTHTGSRPYMCSVCQKPFNRKYALIVHMRVHTGYNPFVCKLCARSFSENSKLRRHMLTHAGDKPYECTVCDQHFMRKDRLDVHMRTHTGEKPYVCSVCEKEFILKNVLNRHMLTHIGEKPHVCSFCDKAFSLKCHLNVHLGTHRGVKPHICNVCEKPFYLKGNLRIHMRMHTGEKPYKCSVCDKAFIENDFEWYVVNEENVETIICDDPSDAAKNGETGAETSRPLFNIRPPKIPHVCNECGKSFKTECRLTSHMRVHTGEKPHVCSVCQKAFALKVSLDSHMTIHTGETPFMCTLCNMKFRTQALGKRHLSLHVKEQPNLAVFMCTVCETILTTAERLEKHMLTHTQHACTMCEKVFTEKGKFETHMLRHKGERRYKCSVCEKAYFKKSSLDTHLIAHSDVTPYACDQCPRSFKTSAALKKHIKSIHTVKPNACSICKASYDHKESLDNHMRKHSGEKPFKCSQCKRAFAQQNFLLAHMRAHVLSKEKRFMCSKCPKAFSLKNYLDNHMISHSAPRPYACRICPKRFLTVYNLNFHMAKSHSFLKRIEPNQRLPDARYEVISHSGVKRFKCTLCPWTCSCQSSIYRHIDKKHPSAKPFVCSLCPKSYTQKVFLDSHMLVHALKNRFVCSLCPMSYAEKYYLDDHMRTHRGKQRFSCSLCPKTYLKRQTLNHHLKSHPESHSVYNQDTLELDNLLKESEQKPFQCSLCLMSFALQQEYSNHMATHPVGGKLPQSSIPTFGEHRTFLCSLCPESFAYKRDLSHHMKSHSVGKHFADAYAQDDPIDYNDRVTLGEDRPFLCSLCPVSFANKRDLNDHMKSHSVGKHLAEAYVQDDPIDYNDTVTHAVHRPFLCSVCMGSFTQKQDLIRHMKSHGDDYDNDDMSMDVEPFSHDDDPLGFDMPIHTRNYPSPNKTSTTRKRKISASKKLPTNEKRFKCHVCEKAFPSEAKLVGHLRSHTGEKPFKCSLCPKAFTHNGNLTAHLLIHTGEKRYVCSMCQVGFNQKNCLEKHMKKQHPYFQPYVCETCNKSFLMKDPFERHKLKHAGIKPFSCPLCQKSFTYKALFDIHLRKHAVMTPPSYKCKECNNMYTTQIRLNRHVKTHRKEPPYMVTYENVENGEGNVTHKKGGKAYMSKYRVRYRCGLCEKSFTQKSSLQCHVRVHTGEKPFSCETCDRTFTYRSHYKSHVQAHTGLKPHKCNICSKSFASKKSRDLHLLRTHADVEKTFQCEECQLMFTFFGLKRHMVLHTNKYKCDKCNRRFGSKFHLDKHELIHVNRVGTLEKCHKCHLCEKSFFHKSSLNHHSRIHTDIKPFKCNVCDAAFYFKNTLNSHSKTHTRIKCHKCKICEETFTDRKDLMRHQLASHKRYKCKECPSSYYNNSGLRLHMRKHFESLKAPYECSFCDLKFAVTQSLDNHMFLKHLICRVCDKIFDEAKDLYSHNMAEHSKNDKCTLCNVTFTEDDVHGYSRVLLGGSVYLCKSCDIKCEIEEPIGENDEENEYECRLCSESFGYNGILSHMETHRKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-