Pgib019747.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Psococerastis gibbosa
Gene Symbol
-
Assembly
GCA_963971405.1
Location
OZ020490.1:29182407-29201972[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 43 0.0067 0.44 11.6 2.3 1 23 50 72 50 72 0.98
2 43 0.0011 0.073 14.0 3.5 1 23 78 100 78 100 0.99
3 43 9.8e-07 6.5e-05 23.6 0.9 1 23 106 128 106 128 0.98
4 43 4.3e-07 2.8e-05 24.8 1.7 1 23 134 156 134 156 0.99
5 43 0.0057 0.38 11.8 0.9 1 23 162 184 162 184 0.98
6 43 0.0031 0.21 12.6 4.7 1 21 190 210 190 212 0.96
7 43 3.7e-06 0.00025 21.8 1.5 1 23 218 240 218 240 0.99
8 43 6.9e-06 0.00046 21.0 0.8 1 23 246 268 246 268 0.98
9 43 0.051 3.4 8.8 8.7 1 23 274 296 274 296 0.99
10 43 2.6e-06 0.00017 22.3 5.1 1 23 302 324 302 324 0.98
11 43 1.7e-06 0.00011 22.9 0.8 1 23 410 432 410 432 0.99
12 43 1.6e-05 0.001 19.9 3.5 1 23 438 460 438 460 0.99
13 43 0.0011 0.075 14.0 0.6 3 23 468 488 467 488 0.98
14 43 0.0022 0.14 13.1 0.6 1 23 494 516 494 516 0.98
15 43 3.7e-06 0.00025 21.8 1.6 1 23 522 544 522 544 0.99
16 43 0.051 3.4 8.8 4.2 1 23 550 572 550 572 0.98
17 43 0.00011 0.0074 17.2 2.7 1 21 578 598 578 600 0.96
18 43 3.9e-06 0.00026 21.8 0.8 1 23 606 629 606 629 0.96
19 43 0.12 7.8 7.7 5.7 1 23 712 734 712 734 0.99
20 43 7.3e-06 0.00048 20.9 1.0 1 23 745 767 745 767 0.98
21 43 5.2e-05 0.0035 18.2 4.2 1 23 773 795 773 795 0.98
22 43 2.5e-05 0.0016 19.2 0.4 1 23 801 823 801 823 0.99
23 43 4.4e-05 0.0029 18.4 3.6 1 23 829 851 829 851 0.97
24 43 1.5e-05 0.00099 19.9 0.6 1 23 857 879 857 879 0.98
25 43 1.6e-05 0.0011 19.8 2.2 1 23 890 912 890 912 0.98
26 43 0.0017 0.11 13.4 4.2 1 23 918 940 918 940 0.97
27 43 3.4e-05 0.0023 18.8 0.8 1 23 946 968 946 968 0.98
28 43 0.0017 0.12 13.4 6.3 1 23 974 996 974 996 0.99
29 43 3e-06 0.0002 22.1 0.2 1 23 1002 1024 1002 1024 0.99
30 43 2.2e-07 1.4e-05 25.7 2.0 1 23 1030 1052 1030 1052 0.99
31 43 0.00035 0.023 15.6 0.1 1 21 1058 1078 1058 1079 0.95
32 43 1.1e-05 0.00072 20.4 0.5 1 23 1144 1166 1144 1166 0.98
33 43 3.9e-07 2.6e-05 24.9 3.9 1 23 1172 1194 1172 1194 0.99
34 43 3.1e-05 0.0021 18.9 1.4 1 23 1200 1222 1200 1222 0.99
35 43 0.0027 0.18 12.8 2.2 2 23 1229 1251 1229 1251 0.96
36 43 0.00016 0.01 16.7 5.5 1 23 1257 1279 1257 1279 0.98
37 43 0.0008 0.053 14.5 2.3 1 23 1285 1307 1285 1307 0.98
38 43 9e-05 0.006 17.5 0.2 3 23 1315 1335 1313 1335 0.97
39 43 0.00018 0.012 16.6 6.4 1 23 1341 1363 1341 1363 0.99
40 43 2.6e-05 0.0017 19.2 2.1 1 23 1369 1391 1369 1391 0.99
41 43 0.0005 0.033 15.1 8.0 1 23 1397 1420 1397 1420 0.97
42 43 2.8e-05 0.0019 19.1 1.1 2 23 1427 1448 1426 1448 0.98
43 43 3.6e-06 0.00024 21.9 0.5 1 23 1454 1476 1454 1476 0.98

Sequence Information

Coding Sequence
ATGAACGCAACAATAAAGGAAGAACCAGAGATAAAAGTTGAAGTGGAAATCCCAACGGATGGTGGCGAGCTACTTTCTGTCGAAACTGTGACAGAAGGAGAAGTTTTTGATATGCCTCATGCAGACGGCTCAAACATGCCGTCCAAATTCAGTTGCAAAGTCTGTTCCCAACACTTCGACGAAAAAATTGCATTGCAGAAACATAAAATTACTCATGTCGGGGAAAAACGTTACCAGTGCGAGTTCTGCTCAAGATATTTCATGTACCAAAGCAAGCTAAAAGTTCATTTAAGGTATCACACTGGGGACAAACCTTACCCGTGTCAAATTTGTTCAAAATTTTTCAGTCGTAATGGAGACCTACGACGACACATAAAGTTGCACAGTGGAGAGAAACCTTTCCAGTGTAACGATTGTTCGAAATGTTTTGCAACCAATGGTGCCTTAACTCTACACATAAGAACACATACTGGTGAGAAACCTTTCCAGTGTCTGTTTTGCTTCAAGTCTTTCGCAGATATTAGCGCTCAACTCAGACATACAAGAATTCATACAGGGGAGAAACGTTACCGTTGCAATGTTTGTGCAAGAGCGTTTACTAATAGTTGCGACTTAAAGTCACACATCAGATGTCACACcggggagaaaccttaccagtgccGGATCTGTTCGAAGTCGTTTTACGAGAGTAGCGCCTTACAGAGGCACGTGAAAACTCATAGTGGCGAGAAGCCCTTCCAGTGCATGGTGTGTTCCAAAAGTTTCACCCAAAAAGTTAACTTACAGGTACATGAAAGGGGACATACAGGAGAGAAGCCCTACAAATGTGAAGTTTGCTCAAAGTGTTTCACTTGCAGTACCCACTTGCTGATACATTCGAGAACACATACGGGAAAGAAGCCTTACGAGTGTAAGATTTGTACAAAATGTTTTGTTACTAGTAGCCAGCTACGGAGGCATTCGAAAACTCATGAAAAACAGATGGGAGTTGCTATCAATTGCGACGCTGCCAAGGGAGAAACAGATATTTCTGACACTGTTATCACAGTGAAAGTGGAGGAAATCAGTGACATAGAGAGCACCCTGGTGGCAAATGATCAAAATGAAATCACGGCGGATGACGATTTATCTAAAAAAGATGACGATGTCACTGCGGAGGGAAAGAAAGATTTACCGTCAATATACTACGAAGAGCCTGGCCTATCAGGTACCCCAACGAAACCTTCATTTACTTGCGAAGTCTGTTCGAAACCGTTCGTACGCAACGGCGACTTACAGAGACACTTTAGAACGCATTCGGGTgagaagccttacaagtgtcaAGTCTGTTCAAAGTGTTTTGCCGATACGGGCAATTTTCAAAAGCACGCGAGAACCCATACTGGCGAGGAACGGCTGCTGTGTAAAATCTGTATGAAAACGTTTTCCCGCATGAGCGGCCTGCTAGCTCATACTAGAATCCATACAGGAGAGAAACCTTACGAGTGTCAGTTCTGTTTAAGACGCTTCACTGATGCTACCGCGGTTCTGAGACATACGAGAATACACACTGGGGAGAAGCCTTATCAGTGTGgcgagtgttcaaaatgttttgcgACTAACGGTGCCTTGACCCTACACACGCGAACTCATACGGGAGAGAAACCTTATCCGTGCCGGTTCTGTTCCAAGTGTTTCGCGGACGGAAGCGCACAACACAGGCATGAAAGAACTCATACGGGGGTgaaaccttaccagtgtgaGGTTTGCTTTAAATCTTTCGCTCAAACTGGGGAATTGAAGAGACACATGAATTGTCATACCGCTGAGGAATCGTATGAGTGTGAGGTGTGTTCGAAAAGTTTCGGCCGCAAACAAAATTTGCGAAGACATGCGAGATTGATGCATGCAAAGAGGAAGCCTGCTGATGATGGCGAAAATAGTCATGTGAAAGAATGTATTGTTAAAATTGAAGTGGTTGAATTACCGACGCAGTCAGAGGAGAGACCGGAAATTAAAGAAGAGCCGGCTACTTGCGTACATCCTGAAGAGGTAACATTCTCAGATTTGAACCAAGATAAGTCTTTTGACGAGTATACTGAGGGTAATACCGAAAACCCTGACCATGTGCAATCTACTGCATCGTTGAATTCTTTCAAATGTCAATTTTGTTCGGATTGTTTTCCCAGTAACGAAGACTTGCATTCTCACTCAAGAACACATAGACAAAAGAATGTTACGAGAGAGAGACCGTACCGTTGTACGTTTTGTCCCAAAAGTTTCACCACCACCGGTAACTTGCTTGTTCATACGCGGGGCCATACTGGAGAGAGAAATTTCTCGTGTCAATTCTGTTCAAAAACTTATTATACTAATAGTCAGCTAAGAAAGCATACAAGGATACATACGGGAGAGACCCCTTACCAGTGTCCTCTCTGTCCAACCAGTTATAGAAGAAAGAATCAGTTGGACATCCATATACTAAGACACAACGGAGAAAAGCCTCACCAGTGTCCGCATTGTCCGAAGAGTTTCGTAACTGTGTATGATTTACGAAACCACAACAAATCCCACACGGGGGAAAAACCTTTCGTATGTGAAGTCTGTCAGAAAGGCTTCCCGTTTCGCGGAACTTTGAAGAGGCACATGAAACTACACACGGGAGAGAAGCCAGAGAAGCTTTATACGTATCACTGTCAGTATTGTAATAAAGCGTTCACACGCGTTCCCGATTTAAATGTTCATACAAGAACGCATACAGGGGAAAAACCGTTCCAGTGTCAAGTCTGTTTAAAAAGTTTCATTCAAAAATGTGACCTGAAACGTCACGACAGAACCCATACGGGCGAGAAGCCTTACCAATGTAAAGTATGTTTGAAGAGCTTCTCGTTTCCCAATGCCCTGCAGAGACATGTTACTATGCATACGGGAGAGAAGCCGTACCAGTGTGAAATATGTTTGAAACATTTCCCGCACAAGTGTGCGTTACAGACACACGTGAAAACGCATTCGGAGGAGAAGCGTTATAAGTGTCCGATCTGTTCGAAAGGTTTCAGAGTGAATAGTCAATTACAGGGTCATGTTCGAGTGCACACAGGGGAGAAGCCTTACGAGTGTGAAATATGTTCGAAACGGTTCACGTTTAGTGGTAGTCTGCGGAAGCATATGAGAACTCATATAGGGgagaaaccttataagtgtGAGATCTGCTCGAAAGGTTATGCGGACCCGAGGGCTTTGCAGAAACATGGAAGAAAGTGTGGTGGCGTCACGGTTGAGTGCTGTGACGTAGTGAGCGAAGATTCTATGGACAGCGTTGAAAAGGAGAAGATGGGTAGTAGGCCTAAGGAGGAAATGGGTGTACCATCAAGGAACCAGTTGGTATCTGCTGATGACGAACCAGATAATAACCTGTATAATGGAAAACAGGCGTTAAAATCCAACAGCCAGTTCACTTGCAACATTTGTTTGAAAGGTTTCTCTAGCAACGGTGCGTTACAAAGACATACAAAAATACACACTGGGGAGAGGCCTTTCCAATGCAAAGAATGTGACAAATGCTTCATTAAAAATTCCGACCTAACAAGACATGCTAGAACACATTCTGGAGAGAAACCCTATCAGTGTCACGAATGTGAGAAATGGTTCGCCCAAAGCTTCGACTTGATCAGACACATTCGATCGCACACAGGCGAAAAACGTGCGCAATGCGATGAATGCTTAAAATATTTCTCCAATAATAGTACCATGCAGAGGCATAAGCTCAGAACACATATAGgtgagaaaccttaccagtgtgaGGTCTGTGATAAGTGTTTTTCCGGCAAATGTGAATTACAGAGACATAGTACAACGCATACTGGTGAGAAGCGTTACCAGTGCCAGTTTTGTTCAAAGCTATTTTCTAACGATAGTTCTTTGCGTATTCATAAAAGATTGCACacaggggagaaaccttacGGCTGTAAAGACTGTTCAGAAGCATTTGCTACTTCTGCGCAGTTGCAAAGACATAGAAGCGTACATACAGGAGTATCAGCTTACCAGTGTCAGGTGTGCTGCAAATGTTTCTCAGACTTGAGTAACTTGCAAAAGCACACGAGAATACACACGGGCGAGAAGCGCTTTCAATGTTCCATATGCACGAAAAGCTTTATGCATGGCTCTGACTTGGCTCGACATGTACGAAGACATACTGGAGAGAAGCCTTTCCAGTGTGATGTATGTGAGAAATGTTTTACTACCAAATTTGAGTTGCAGTCGCATAAAAAGAAATGTCACACGGGAGAGAAGATTAATCAGTGTAACATTTGTTTGAAGTGTTTTCCTTCTAGTGATAGTTTGGCAGCCCATATAAAAAGGCATGCCAGACAGAAGCCTTACGCTTGTCAGGATTGCTCAAAGAGTTTTGCTAGTAGTTCGGCGTTACGTGCACATTCAAGGAAGCATACAGAAGTCTCAGTTACTGAGAGggatattaaaattaaagaagaGGTGATTGATATGGAGATTGCTCTGGAGGATGGACATCAAACAGggAATGAAAATGAAACCATTattaaggctgaaatattgtcAGATGAAGATGCGACATCACCGGGTGACTCTTCGTCGTCTCAAGATAACAATAGTACAGATATCGGAGAAATTAAAGCGGAGGAGGAAGGCGTTCCTGTTAACATTTCTTGA
Protein Sequence
MNATIKEEPEIKVEVEIPTDGGELLSVETVTEGEVFDMPHADGSNMPSKFSCKVCSQHFDEKIALQKHKITHVGEKRYQCEFCSRYFMYQSKLKVHLRYHTGDKPYPCQICSKFFSRNGDLRRHIKLHSGEKPFQCNDCSKCFATNGALTLHIRTHTGEKPFQCLFCFKSFADISAQLRHTRIHTGEKRYRCNVCARAFTNSCDLKSHIRCHTGEKPYQCRICSKSFYESSALQRHVKTHSGEKPFQCMVCSKSFTQKVNLQVHERGHTGEKPYKCEVCSKCFTCSTHLLIHSRTHTGKKPYECKICTKCFVTSSQLRRHSKTHEKQMGVAINCDAAKGETDISDTVITVKVEEISDIESTLVANDQNEITADDDLSKKDDDVTAEGKKDLPSIYYEEPGLSGTPTKPSFTCEVCSKPFVRNGDLQRHFRTHSGEKPYKCQVCSKCFADTGNFQKHARTHTGEERLLCKICMKTFSRMSGLLAHTRIHTGEKPYECQFCLRRFTDATAVLRHTRIHTGEKPYQCGECSKCFATNGALTLHTRTHTGEKPYPCRFCSKCFADGSAQHRHERTHTGVKPYQCEVCFKSFAQTGELKRHMNCHTAEESYECEVCSKSFGRKQNLRRHARLMHAKRKPADDGENSHVKECIVKIEVVELPTQSEERPEIKEEPATCVHPEEVTFSDLNQDKSFDEYTEGNTENPDHVQSTASLNSFKCQFCSDCFPSNEDLHSHSRTHRQKNVTRERPYRCTFCPKSFTTTGNLLVHTRGHTGERNFSCQFCSKTYYTNSQLRKHTRIHTGETPYQCPLCPTSYRRKNQLDIHILRHNGEKPHQCPHCPKSFVTVYDLRNHNKSHTGEKPFVCEVCQKGFPFRGTLKRHMKLHTGEKPEKLYTYHCQYCNKAFTRVPDLNVHTRTHTGEKPFQCQVCLKSFIQKCDLKRHDRTHTGEKPYQCKVCLKSFSFPNALQRHVTMHTGEKPYQCEICLKHFPHKCALQTHVKTHSEEKRYKCPICSKGFRVNSQLQGHVRVHTGEKPYECEICSKRFTFSGSLRKHMRTHIGEKPYKCEICSKGYADPRALQKHGRKCGGVTVECCDVVSEDSMDSVEKEKMGSRPKEEMGVPSRNQLVSADDEPDNNLYNGKQALKSNSQFTCNICLKGFSSNGALQRHTKIHTGERPFQCKECDKCFIKNSDLTRHARTHSGEKPYQCHECEKWFAQSFDLIRHIRSHTGEKRAQCDECLKYFSNNSTMQRHKLRTHIGEKPYQCEVCDKCFSGKCELQRHSTTHTGEKRYQCQFCSKLFSNDSSLRIHKRLHTGEKPYGCKDCSEAFATSAQLQRHRSVHTGVSAYQCQVCCKCFSDLSNLQKHTRIHTGEKRFQCSICTKSFMHGSDLARHVRRHTGEKPFQCDVCEKCFTTKFELQSHKKKCHTGEKINQCNICLKCFPSSDSLAAHIKRHARQKPYACQDCSKSFASSSALRAHSRKHTEVSVTERDIKIKEEVIDMEIALEDGHQTGNENETIIKAEILSDEDATSPGDSSSSQDNNSTDIGEIKAEEEGVPVNIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-