Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.8e-06 0.0025 18.3 0.1 15 41 86 109 77 111 0.87

2 5 0.54 2.8e+02 2.1 0.2 18 41 117 137 112 139 0.81

3 5 0.0056 2.9 8.5 1.0 5 38 133 166 129 166 0.80

4 5 0.00016 0.084 13.4 0.7 18 40 173 192 169 195 0.89

5 5 0.67 3.5e+02 1.8 3.9 5 40 189 220 185 222 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.8e-06	0.0025	18.3	0.1	15	41	86	109	77	111	0.87
2	5	0.54	2.8e+02	2.1	0.2	18	41	117	137	112	139	0.81
3	5	0.0056	2.9	8.5	1.0	5	38	133	166	129	166	0.80
4	5	0.00016	0.084	13.4	0.7	18	40	173	192	169	195	0.89
5	5	0.67	3.5e+02	1.8	3.9	5	40	189	220	185	222	0.81

Coding Sequence: ATGCAGGTGCAGTGGAGCACGAATGGCTCAGGAAGTTCACCAGTCTACTGCCCATCGCAGGGTCTTCTCAGCCCCCAGACATTCAACCCCTCCACGGGACCAACCTACTCCTTCACCGCCGATTTCCGCCCTCAGCCAATTTCCGCACTCTCCGTTTTGCCCGGTCCAGAATCACCGTGCAAAGGCTCGAGGCGACCCAGCTGTCTACACTCTTCCGGGAAGCTGTCCCCGTCCTCGGAAGGTGAAGAAGGTTCGACGACTAATTTGTGTAGAATCTGCGGGAAAACGTACGCACGCCCGAGCACGTTGAAGACGCACCTCAGAACGCATTCGGGGGAGAAACCTTATAGGTGTGATGAGTGTGCCAAGTCCTTCAGTCAGGCTGCCAACCTGACGGCACATGTTCGTACCCATTCCGGGGAGAAACCTTTCCGGTGTCCAATCTGCGACCGGCGATTCTCGCAGTCATCGTCCGTAACCACCCACATGAGGACCCATTCGGGCGAGCGTCCTTACCGCTGCCGGCTATGCAAAAAGGCCTTCTCCGATTCATCCACCCTGACAAAACATCTAAGAATACATAGTGGTGAGAAGCCTTACCAGTGCAAGCTGTGTCTTCTTAGGTTTTCTCAGTCTGGTAATTTAAATAGGCATATGAGGGTGCATGGGACGACGGCAGCGGTATGA
Protein Sequence: MQVQWSTNGSGSSPVYCPSQGLLSPQTFNPSTGPTYSFTADFRPQPISALSVLPGPESPCKGSRRPSCLHSSGKLSPSSEGEEGSTTNLCRICGKTYARPSTLKTHLRTHSGEKPYRCDECAKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGTTAAV

Sequence clustering based on sequence similarity using MMseqs2