Pgib002944.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Psococerastis gibbosa
Gene Symbol
-
Assembly
GCA_963971405.1
Location
OZ020484.1:42337255-42339890[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.5e-07 0.00012 22.2 0.0 1 42 17 57 17 60 0.93

Sequence Information

Coding Sequence
ATGGATTTGCTTAAGCACGggcaaaagaaaagaaaaaacctgctcTATACGGAGGAAAAAATGCGTCAAGCCCTTATTGATGCAAGAAAcgggatttccataaaaaaggcaGCAAAAAACAATGGGGTTCCACGGATCACCTTGTTGTATAAATTGAAAGGAAAAAATCCGGAGGGGAGAAGAATTGGAGCACCAACAGTTTTTAGTGCGGAGGAAGAGGACATATTAGTGCAATGGGTGCTTGGGATGTCGGCAAGAGGTTTCCCTGTTTCTAAGGAGCTGTTCATATCCAGTGTAAAGAAAGTGGCTCGTAAATTGGAAAAAGATGCATTTCAAACAAAGGAGCCCAGCAACAAATGGTTTTATGGATTCATGGGAAGGCACAAGGAACTATCAAGCCGTGTTGCACAAAACCTAACCAAAAGTAGGGCTTCGGTTTCAATGGAGGAATTAAGGAACTGGAGCGTTCAGGTGAAAAAGTGTCTTGAAGAAAAGGGGGTGTTTGATGTTCTAGAAAGTCCTGCAAGAGTCTTTAACGCTGACGAAacggccttttttttaaatcctaaggGCGGTAAAGTACTGGCTACAAAAGGGCAGCGTGCAGTCTACCAAAAATCTGGAGATAATGAGAAGGCATGCATAACGGTCTTAGTTAATGGCAATGCCAATGGAGACATGGCCCCCCCAATGATTGTGTTGAAGTACCAGAGGGTGCCAGGGGAAATCGAGGAGAGTTTGCCTCGAGGATGGGCAAGAGGGAAGTCAGACCGAGGATGGATGACCCAAGAACTTTGGTTTGAATACATAGCAAAtgtatttaatccctggttagaTCGCGAAGGGATCACTAAGCCTGTTATTCTATTTGTTGACGGACATTCTTCTCACATATCAATTGAAGTGAGTGACTTTTGCATGACACATGGAATTGAACTTATTGCCTTGTTCCCAAATTCTACGCATATTTTGCAGCCGATGGATGTAGCCGTTTTTAGAAATCTTAAAAGAGAATGGAAAGATGCTGTTCAAGATTGGCGGCTTGCAAATGATAATtgtgaattgaagaaaaaagactTTTGTAAGGTGCTCAAAGCAGTGTTAGAAAAAtgtttcacacaaaaaacattgGCCAATGGATTCAAAGCTTGCGGTTTAGTGCCTTTCGACATTGAGGCCGTTAGAATGCCATCATTCGATCAACCAACTGCAACTCAACATGTTAATGGCGCAATTACTCAGGAACTACCGAAACAATTTCTTGCCTGGCTTAAAGGGCTTATTGGTGACGTAGAGAACGCAGATCCTGCACTCATAGACCTGTGGTGCAGAGCGAATGCACAATTTGCGAACAGTGTCAACAAAGATGCGCCTCTTCCCAATGCAGCTACTCCATCCGGCCCTAAGGAGGCAGATGCGAATGCTGCTACTGAGGAGATGTTTACCGATGACTTTTCCTTGTTGTTTGAGAATGATGCAATGGAAAGTTTTATTGATGTGGTTAACGACCCTTTACTTGATGAAACTAGTTCCACAAAGAACCAACGTGAAGAGCCCGGTGTGGAAGACACCCCTACAAAACAAGCTATCTCTACTTCCGGTAACAATTCCGTACAATTGCCATCAGTTCATCCGCCTTGGCTGGTGTCGCCATACAAATCATGCTTAATATGGCCAAGAGCAGACCCAAAGACAGGGAAAATGAAAGTACCCAAAGATGGGGTCCCCCCGGTAATTACATCGGATCTGTTCCATATGCATGCAAATGCAAAGGCGGCTCAAGCAAAGAAGGTAAAAGAGGATatagagagaaaaaaacaagaacgtttaaagaagaagaggaagatggaagaagacaaagagaagaagaagcaagagcgtttggagaaaaaaaagaagaagaaggcagacGACATGTTAAAGAAAAAAGCTGAAAGGGCGCTTTACACAAAGCGGCCAAAACGTACGAAGAAAAAGACTCCATTTAAAGATTTCATCTTGGTAAAATTTGTAACCGAAGAAGACCAGAGGGAGAAATTTTACGTTGGTGAAATAAATGGAGAGGCAAAAGAAGCAGGGGTGGACGTTctgttttttcgaaaaaaaaccgggaaaataggaactttttttagtttccccgAAGTGAGGGATGAGGGGTTTgtggaatattataatataattgctaGATTGTCGGAGTATAATATGAACAGGGACAGCTACGTTTTCCCCAATCTGGGCAATTTTGTCGACTTAAATAaggtacattaa
Protein Sequence
MDLLKHGQKKRKNLLYTEEKMRQALIDARNGISIKKAAKNNGVPRITLLYKLKGKNPEGRRIGAPTVFSAEEEDILVQWVLGMSARGFPVSKELFISSVKKVARKLEKDAFQTKEPSNKWFYGFMGRHKELSSRVAQNLTKSRASVSMEELRNWSVQVKKCLEEKGVFDVLESPARVFNADETAFFLNPKGGKVLATKGQRAVYQKSGDNEKACITVLVNGNANGDMAPPMIVLKYQRVPGEIEESLPRGWARGKSDRGWMTQELWFEYIANVFNPWLDREGITKPVILFVDGHSSHISIEVSDFCMTHGIELIALFPNSTHILQPMDVAVFRNLKREWKDAVQDWRLANDNCELKKKDFCKVLKAVLEKCFTQKTLANGFKACGLVPFDIEAVRMPSFDQPTATQHVNGAITQELPKQFLAWLKGLIGDVENADPALIDLWCRANAQFANSVNKDAPLPNAATPSGPKEADANAATEEMFTDDFSLLFENDAMESFIDVVNDPLLDETSSTKNQREEPGVEDTPTKQAISTSGNNSVQLPSVHPPWLVSPYKSCLIWPRADPKTGKMKVPKDGVPPVITSDLFHMHANAKAAQAKKVKEDIERKKQERLKKKRKMEEDKEKKKQERLEKKKKKKADDMLKKKAERALYTKRPKRTKKKTPFKDFILVKFVTEEDQREKFYVGEINGEAKEAGVDVLFFRKKTGKIGTFFSFPEVRDEGFVEYYNIIARLSEYNMNRDSYVFPNLGNFVDLNKVH