Pgib005946.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020485.1:40062489-40064531[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-10 5.3e-08 32.9 0.0 2 45 20 63 19 63 0.93
Sequence Information
- Coding Sequence
- ATGCCGAACGTTTACTTGTCAAAACTTCCTAGCGAATCGAGGAGGGGTTTGTGGACCCAAGAGCAGTTAATGAATGCTATAGATGCTGTAAAAACCAAAGTGCTTGGAGTAAACGAAGCTGCCAAAACCTACGGGATTCCATCCACAACACTAAAaaatagactaaaaaataacaacacaaACAAGAGGAGTCTTGGGCCTGACTCCGAACTTGGCATTGAAGCGGAGCGAAAACTAGCTTCTCATATAAAGAAGCTTCAGAGACATGGGTTTGCCCCAGATTCAAAGTCTGTCAGGGAGATGGCCTTTAATTTGGCCAAAAAAATGGGCATCAGAACCAAATTTAACGAAAAGGAAGGTTTAGCTGGCTACGTCTGGCTTAAAAGTTTCTTGCGGCGCAACCCCGACATCAGCGTGAGGAAAGCAGAAGGAGTTTCCATTGCGAGGGCCAAGGGAATGAacaaaaaagacgtcaatagtTATTTCAATCTTCTCCAAGACACTCTTGAACAGAATCAGTTATTTAACAAGCCAGGACATGTTTTCAACATGGACGAAACAGGTCTCCAGCTGAACAACAAGCCTGGAAAGGTCCTGGCAGCTAAAGGATCGAAAAGCGTAGCGGCCATCAGTTCAGGCGAAAAAGGAGAAACTGTAACATGCATTGCTTGCGTAAATGGAGAAGGAGTGTTCCTGCctccattttgcatttttaaggGGAAGAACAAAAAAGAGGAATGGCAAGATGGGATGCCACCAGGAACAATGGTTGTGATGAATGAAAAATCAGCTTACGTTACCtctgtattgttcctaacatggCTGAATGAACACTTTTTGCCAAGGAAACCGCCAGGGAAAGTTCTGCTTTTATTGGATGGCCATGCATCACACACCAATGAGGTGGAAATGTTAAAGTTCGCTGAAGAAAACGAGATAATTCTACTGGGATTTCCTCCTCACACGACACACTACCTGCAACCTTTAGACAGGGCGTTTTTCAAGAGCCTCAAGTCATACTGGTATAACTTTTGCAATACTTTCATGCGCACAAATCCAACGAGGAAACTGAATAGGTTGGTTTTCGGAAAGTTACTAGGTTTATCATGGGAAAAAGCATGCACCGTTCAAACTGGAATCAATGGATTTAAAGCTACAGGCGTCATTCCTTTTAACCCCTTGGCCATACCGGCCGAAGCTTATCTAGCCGAAGATGCAAACACAATGGAACAAATGCTTGTTCAAACACAAGACTGCAATCCATCTGTTGCAGAGTTGGAAGAGACGCCTGCTCTACAACAAAACATCGTTCCTGCAGTTGCACAGGCAGACAAGGTAATGAACACTCAACCTGCAGGTCCTCCAGAAAATCCTGGCTCGCCGGTACACACCTCGAATGCAATTTTTGCATCCGGTACTAGCGTTCAAACCCCTAAAACCACACCAGGAAAAATGCTGGATGATATTTCACCTGTTCCGGATTTAAACAAGCCATCCACATCCAAAGCTCGGTTTCGAGCTAAACGAGTTGCTGAAATATTCAATTCGGCAGAGAACATCAGGAAGCAGTCGGAGAAGCTCAAGCAGCAGCCGGCTAAGAAGGCCAAGAAAAGTTCAATATCCAAATCGACCAAAAGAGCATTGGTATTTTCTGTCCCATCTTCTGCGAGAGATTCATCTGATTCGCAAATTGAAGTGCCATTGGGTCGTGACAGTGACAGCAACGAGGACGATGACGACGGAGCCGAGGAAAGGAAGTGGCAGCCGGTGGAACGAGTTGTGGGCGAATTCGTTGCGGTGCTGTATGAAGGCAAATATTTCCCGGGCGAGATATTATCCATTAAAGAAACGGAGGCTCACGTGAAATGCATGGCGCCAAGCGGACGCCTATGGAAGTGGCCGGAAAATCCTGACAGGTTCTGGTACCGGTGGAAAGATGTTGTGTCTCATATAAATGAACCGACGAAAACCAGTACAACtagaaaccttttttttgtaaaggaaCTTGAGTTTCAAAGTGCTTTTACGTTCAAACTAAAATAG
- Protein Sequence
- MPNVYLSKLPSESRRGLWTQEQLMNAIDAVKTKVLGVNEAAKTYGIPSTTLKNRLKNNNTNKRSLGPDSELGIEAERKLASHIKKLQRHGFAPDSKSVREMAFNLAKKMGIRTKFNEKEGLAGYVWLKSFLRRNPDISVRKAEGVSIARAKGMNKKDVNSYFNLLQDTLEQNQLFNKPGHVFNMDETGLQLNNKPGKVLAAKGSKSVAAISSGEKGETVTCIACVNGEGVFLPPFCIFKGKNKKEEWQDGMPPGTMVVMNEKSAYVTSVLFLTWLNEHFLPRKPPGKVLLLLDGHASHTNEVEMLKFAEENEIILLGFPPHTTHYLQPLDRAFFKSLKSYWYNFCNTFMRTNPTRKLNRLVFGKLLGLSWEKACTVQTGINGFKATGVIPFNPLAIPAEAYLAEDANTMEQMLVQTQDCNPSVAELEETPALQQNIVPAVAQADKVMNTQPAGPPENPGSPVHTSNAIFASGTSVQTPKTTPGKMLDDISPVPDLNKPSTSKARFRAKRVAEIFNSAENIRKQSEKLKQQPAKKAKKSSISKSTKRALVFSVPSSARDSSDSQIEVPLGRDSDSNEDDDDGAEERKWQPVERVVGEFVAVLYEGKYFPGEILSIKETEAHVKCMAPSGRLWKWPENPDRFWYRWKDVVSHINEPTKTSTTRNLFFVKELEFQSAFTFKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01271917; iTF_01271943; iTF_01271918; iTF_01271919; iTF_01271920; iTF_01271921; iTF_01271922; iTF_01271923; iTF_01271924; iTF_01271925; iTF_01271926; iTF_01271927; iTF_01271928; iTF_01271929; iTF_01271930; iTF_01271931; iTF_01271932;
- 90% Identity
- iTF_01271917; iTF_01271943; iTF_01271918; iTF_01271919; iTF_01271920; iTF_01271921; iTF_01271922; iTF_01271923; iTF_01271924; iTF_01271925; iTF_01271926; iTF_01271927; iTF_01271928; iTF_01271929; iTF_01271930; iTF_01271931; iTF_01271932;
- 80% Identity
- -