Pgib010524.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020487.1:12321682-12326027[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.01 2.2 8.5 0.0 24 35 77 88 77 95 0.88 2 2 5.2e-08 1.1e-05 25.5 0.0 1 40 107 146 107 151 0.84
Sequence Information
- Coding Sequence
- ATGCCCTCCTCAGCTATAGTAGCGCAGTTCCTGAGGGATAGGAGAGAGAAGGCCAGCCATATCAACCCCGAATTCTACGGGAATGACGCCATTATATATTGGAACACATGGACTTCTTGTAATCAGCCAAACCGGCACTTTCTCACAAGAATGGCGTTACATGGATTCCAGTATAAAATTTGTAATCGAACTGACTACCATGAGCTGCATCTGCACCCTGTGTGGCGGCGCCTGTACGATGTACCACATAGAACTCTGTCCCGAAAGAGTGTTGTCCCTCACGCGatgcCAGGAAAAAAAGGAGCGTTTTTAAGTTACAGCGAAGAGGCAATGACCCAAGCCGTCAACGACGTTAGACTCCATAACACAAAGATTCGGACTGCCGCCAAGAAATTCGGAGTCCCTCGGCAAACTCTCTCAAACAAAGTTACCGGGAAGTCTCCCCTGGAAAGGAAGATGGGCCCAGCCACGATGCTAACAACAGAAGAAGAGGGGAGGATATGTCACATTCAAAAATACCTGAATGATTTAAAACGGGACTGCAAATTTTTTAAGGATAATAAGCCAGGGAAAACATTTTTGAAGCTTTTTATGAAAAGGAATAAAGGAGTAGCTTCAAGAACCTCGCAAAACTTGACGTCTTCAAGAGCAGCTGTCACCGAAGAAGCAATCCAAGCCTGGTTTGGGAAAGTTGGGgactatttaaaagaaaaagggTGGGCCGACGTTCTCCTTGACCCCAAAAGGGTGTTCAATTGTGATGAGACCGCATTCATGTTGGCACCAAAAACACCGAAGGTCCTCGCcaaaaagggagaaaaaaatgtgtATCAACAAGTTAACGCTGACGACAAAGAGTGTGTCACAACAGGAAATGCTGCCGGCACCTATGCTCCTACgacaattaataatacccttACAAGCGAATTCCAGCCGAAATTTCCGACAATTTCCCTCCAAAGTGGGGACTGGGAAAAACCGACTCTGGTTGGATGA
- Protein Sequence
- MPSSAIVAQFLRDRREKASHINPEFYGNDAIIYWNTWTSCNQPNRHFLTRMALHGFQYKICNRTDYHELHLHPVWRRLYDVPHRTLSRKSVVPHAMPGKKGAFLSYSEEAMTQAVNDVRLHNTKIRTAAKKFGVPRQTLSNKVTGKSPLERKMGPATMLTTEEEGRICHIQKYLNDLKRDCKFFKDNKPGKTFLKLFMKRNKGVASRTSQNLTSSRAAVTEEAIQAWFGKVGDYLKEKGWADVLLDPKRVFNCDETAFMLAPKTPKVLAKKGEKNVYQQVNADDKECVTTGNAAGTYAPTTINNTLTSEFQPKFPTISLQSGDWEKPTLVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -