Pgib015603.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- bab1
- Assembly
- GCA_963971405.1
- Location
- OZ020489.1:5267450-5286566[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-13 1e-10 41.6 0.0 2 45 357 400 356 400 0.93
Sequence Information
- Coding Sequence
- ATGGGCAGTTCGCAGCAGTATTGCTTGCGGTGGAACAATCACCGCTCCAATCTCCTGACCGTCTTCGACCAGCTGCTACAGAACGAGGCCTTTACAGATGTCACGATTGCCTGTGACGGAGGCACAAGTGTCAAGTGCCATAAAATGGTACTTGCAGCGTGCAGTCCATACTTCCAGTGCCTGTTCACGGAGCTGCCATGCCGCCATCCTGTTGTGATCCTCAAAGACGTCAAGTACTCGGAAATGAAAGCAATTTTAGAATATATGTATAAAGGAGAGGTAAATGTTGCCCATGACCAGTTAGCAGCCTTGTTAAAAGTCGCTGAGGCGCTCAGGGTGAAAGGATTAGTCGAAGAAAATGGCACGACCGGGAAACCCGAGCCCGACCAGACAGATAGAAGAGACTCGAGTTCACCACCAATCATAGGCACTTCTACCGCCGCTTCCTCGTCCGTCCCTCACTCCAGTATAAGCCCTACTCACTCAACACACGGCAATGGGGAAAGTCACCCGAGTCCTGGATATGGCAAGCCGTACCATTTTAATAGGAGCCTGCCAGATCGGGGTCGATCCGGTGGTATACCGATGTGGAATGTTCCTCATCCGGCGCCGACGCCTTCCGTAGTTCCCCACGCCGCAGCGACAGCGGCTGCAATGATGAACTGCTACGAGGCTGCTTCTTATGACATGTCACCACTTCGGCGGAAAAAGTTGCAAAGCCTTATGATGACGAGGGATACTCCGATACTGAGGACTGTTTTAGGACAAGGGCATGTTGACTCGTCACAAACGATGCCCCTTATATGCCATCCAGACACGCCTGAGAGAAGTTTACACTTTAATGGATCACTACCGGAGTCAGATAGGaGTTTAAAAGCCGAGCCTTGTGAAGATGCCCCCAGTCCGTATACAGATATCTCCATGCATGACGAAGAAACGAGTCCGTCTGATAAGGCCAACAAATCATTGCCAACTTCTTCGCCTTCCGACAATCGCGGAGTGTCCTCCGGTATTGCCACCTACGTGCCGCAACAGAAACCCGAATGGAAGCGGTATAAGCAGTACACGCGTAACGATATTCTCAGCGCCATTGACGCAGTCAGAACCGGGATGAGTGCTCTGCAGGCAGCCCGCAAGTTTGGCGTCCCGTCCCGTACGCTGTACGACAAAGTCAAAAAGCTGGGCATCACGACGAGCAGGCCGTTCAAAAAGGGTTCCAACGGAGGCAACGGGCCAGTTTTTCCCTACCCTATGGCCATGTTTGCGTGTAAACAGGATAATGAGGACCCGGTGCCTTCACATCCAAGCGGCCCGATGCTGGAACCCATGTTCCTGCAACATGCACTGGAGAGGGGGAAGTCTGGAGACTATGGAGAGAGAGAAGCACTGATGGCGCTGGCAACAGCGCATGCGCAACAGGCGTCCCAAGGTTCTGGCAGCACCCACAACTCGTCGCCTGAGTACAAATGGCCGGGAAGCATGACGCCAAGTCCAAACGATAATGCTATGGATGATGAGGACCAGGTGGAGGACCTTTCCGTCAATAGAAAAGAAACCCACCAATCGCAGCACCCTACAGGAAGCGTCATAGTACCACCCATGACTCACTTATCACTGAAATCCGACGATGAACGGGGGTCCCGCTTTAATGAAGTCGAAAGGAATCCCTTCGCACATAGAGATATGAAAGAAGACGTGGATCGTGGACGACTGACCCATCTAAGAGAGGTAAAAGACGACGAACGTGGGCATCTAACCAATATAAGAGACGACGGACGGTTGACTCATCTTAGGGACCCTAAGGACGACGAGCGGGGGCGTGTTTCTCTGAGAGATTTAAATGATGACGATCGTGCTCGGCTTGCTCATCTCAGAGATTTAAAAGATGAGGAACGAGCACGCATGGCGCTTCTCAGAGATATTAAAGACGAGGAGCGGGCACGGGTGACTCATCTAAGAGAGGATGACGATCGTGGACGCTTGACACTTCTCCGAGATGTAAAAGATGAAGCCAGCGGACGTCACGCAATACGAGATTTGAACGAAGATGATCGAAGTCGTCTGTCGCTTAAAGACGACGATCGAGTTGATGGAGGGGAACCTCGCGAATGA
- Protein Sequence
- MGSSQQYCLRWNNHRSNLLTVFDQLLQNEAFTDVTIACDGGTSVKCHKMVLAACSPYFQCLFTELPCRHPVVILKDVKYSEMKAILEYMYKGEVNVAHDQLAALLKVAEALRVKGLVEENGTTGKPEPDQTDRRDSSSPPIIGTSTAASSSVPHSSISPTHSTHGNGESHPSPGYGKPYHFNRSLPDRGRSGGIPMWNVPHPAPTPSVVPHAAATAAAMMNCYEAASYDMSPLRRKKLQSLMMTRDTPILRTVLGQGHVDSSQTMPLICHPDTPERSLHFNGSLPESDRSLKAEPCEDAPSPYTDISMHDEETSPSDKANKSLPTSSPSDNRGVSSGIATYVPQQKPEWKRYKQYTRNDILSAIDAVRTGMSALQAARKFGVPSRTLYDKVKKLGITTSRPFKKGSNGGNGPVFPYPMAMFACKQDNEDPVPSHPSGPMLEPMFLQHALERGKSGDYGEREALMALATAHAQQASQGSGSTHNSSPEYKWPGSMTPSPNDNAMDDEDQVEDLSVNRKETHQSQHPTGSVIVPPMTHLSLKSDDERGSRFNEVERNPFAHRDMKEDVDRGRLTHLREVKDDERGHLTNIRDDGRLTHLRDPKDDERGRVSLRDLNDDDRARLAHLRDLKDEERARMALLRDIKDEERARVTHLREDDDRGRLTLLRDVKDEASGRHAIRDLNEDDRSRLSLKDDDRVDGGEPRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01272252;
- 90% Identity
- iTF_01272252;
- 80% Identity
- iTF_01272252;