Pgib012895.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020488.1:3824345-3830133[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.3e-09 2.1e-06 27.9 0.0 2 39 146 183 145 186 0.91 2 2 1.1e-07 2.4e-05 24.5 0.0 2 36 283 317 282 323 0.89
Sequence Information
- Coding Sequence
- atgcagcaagttAAGGAAGAAGCGTATAATCAGGACGATTGTGTTGTAAACATCTTCCCTACTGCAACAACTTTACTACCTATGGCACGTTTTGGCCTCACAATCCGCAAATTTGGCTTCAAAATACTTGGTTCGGACTTCCTTAGTCACTTCAGTCTGTTAGTAGATCTACAGTGGCGATGCTTCACCGCCCGCGTGTGTAGCTTAACGTGTTTTACTGAGTTTCTGGACAACCCCGAACTGTCAGTTTCAAGTGTTCATCGTCCGTCTCTTGAGGCAGCAATCCAGGATATGTTTACAGTGACGTACAAGCTCCGAGATGCAACATACTTAGAGGACAAGTCTAcgtgtcgaccgcagatgttgacgaaatGTGAGCAAACACCGGCATGCAATGGAACCCCAGAACCATACCGTTCGCACCGGGATTATACAACAGAAACGTTACGAAAAGCTATCGAGCAagtcaaaaacaaaacaatgacATTGCGGCAAGCTGAAAAACGCTACAAAGTACCAAGGACAACGATTTATAGGAAAGTTAAGGGTATTCAGTTGGGTAACGTTGGCAGGCCTCCCGTTTTCACTCCCGGCGAAGAAGTAGAGTTGGTTAATTATTTAATCAACAGTGGGATTGGCACTCCTATTGCTCCATGCGATGCCAGGCTTTCTGTCAAACGATACCTGGACAAGAAAGGGGCGACAGTTAAGCGTTTCACTAATAACTATCCGGGTAGTGAATGGGTCAAGTCTTTCTTGATGCGACATCGCGAACTTACGTTGCTTGAAAAATCGTCGTCAAACAACCGGACTTCAGAAGCGTACCGTACGTACCGTGATTATACTACAGAAACATTACAAAAAGCAATGGAACAagtcaaaaacaaaacaatgacAATCCGGCATGCTGCAAAAAGCTACAAAATACCCACGGGGACGATTAAGAACAAACTTAGCGGTAGACACTTGGGCAATGTTGGCAGACCTGCCGTCTTCACTcctgacgaagaagaagagttGATCAATTATTTAATCAACCGTGGGATTGGGTCGCCAATCAGCATAAAAGACCTCACTATTTCGGTTAAAGGATATCTGGATAAGAATGGGACTACTGTTGCACGTTTCGCCAATAATGTTCCTGGTTATGACTGGGCGAAGTCTTTTTTGAGGCGGCATCCGAAGCTAACTTTACCTAATGATGATATCGACGACAGAGGCTACGTTATTCACAATTTGAAGGATCACGAGTATAAAGTCACCAGGTCTGCTAGAGGGGCAATAGTAATCTTGTACGCCGGATACTCCTACGTCCTCAACCGACAAAATCCGAAACATCCTTTCAAGTACTGGAGATGCGCTAACAGGAGAACTGCGGTCAAATGCTATGCTACGGCAATACTGAAGGATGACAGATCTCTTATAATCAGGAGCTGTCATTCACATCCTCCAAGTCACGAGGATTTACACTAG
- Protein Sequence
- MQQVKEEAYNQDDCVVNIFPTATTLLPMARFGLTIRKFGFKILGSDFLSHFSLLVDLQWRCFTARVCSLTCFTEFLDNPELSVSSVHRPSLEAAIQDMFTVTYKLRDATYLEDKSTCRPQMLTKCEQTPACNGTPEPYRSHRDYTTETLRKAIEQVKNKTMTLRQAEKRYKVPRTTIYRKVKGIQLGNVGRPPVFTPGEEVELVNYLINSGIGTPIAPCDARLSVKRYLDKKGATVKRFTNNYPGSEWVKSFLMRHRELTLLEKSSSNNRTSEAYRTYRDYTTETLQKAMEQVKNKTMTIRHAAKSYKIPTGTIKNKLSGRHLGNVGRPAVFTPDEEEELINYLINRGIGSPISIKDLTISVKGYLDKNGTTVARFANNVPGYDWAKSFLRRHPKLTLPNDDIDDRGYVIHNLKDHEYKVTRSARGAIVILYAGYSYVLNRQNPKHPFKYWRCANRRTAVKCYATAILKDDRSLIIRSCHSHPPSHEDLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -