Ppal011100.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- stc
- Assembly
- GCA_014825455.1
- Location
- QVNV01011068.1:1-2226[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.1e-07 0.0023 18.2 8.4 1 19 32 50 32 50 0.96 2 10 0.44 4.8e+03 -2.0 0.7 5 10 79 84 79 84 0.94 3 10 6.1e-06 0.067 13.5 12.3 4 18 97 111 90 112 0.86 4 10 0.0044 49 4.4 11.6 1 11 152 162 152 174 0.88 5 10 1.3e-09 1.5e-05 25.2 13.8 1 18 179 196 179 197 0.97 6 10 1.1 1.2e+04 -3.3 0.8 6 10 226 230 226 230 0.89 7 10 0.41 4.5e+03 -1.9 4.3 14 19 249 254 242 254 0.75 8 10 1 1.1e+04 -3.2 0.2 9 11 272 274 271 276 0.80 9 10 1.6e-07 0.0017 18.6 10.5 1 16 290 305 290 316 0.87 10 10 2.1e-05 0.23 11.8 14.9 1 19 322 341 322 341 0.96
Sequence Information
- Coding Sequence
- TGCTTTTGTGGAAAAAAAACACAAGAAGTGCCTTGTCGAGCCAACGTCACGGATATGTATTGCTGTGACAATGTCTGTAATAAACCGTTGGACTGTGGAAAGCATTATTGTCAAAAAGTTTGTCATTTGGAGCCCTGCGAATTTTGCAGCCTGGCGCCGGAAAGAGTTACTGTGTGTTGCTGCGGTCAAACACCTTTAACAGAAAAGAGAGAGAGCTGCTTAGATCCTGTGCCCACTTGCGATAAAATCTGTTCCAAGTCTCTGGCTTGCGGTCGACCTAGTAACCCGCATACCTGCAAAATGCAATGTCACACTGGCGATTGTCCCGAGTGCGATCTAAGCACGGAAGTCAAATGCCGATGTGGTAACATGAATCGTGAGATTCCTTGCCGGGACTTAACGAGTAAGGCCGATGATGCGCGTTGCGCGAAGCGTTGCAAGAAGAAGAGGTCCTGTGGCAAGCATAACTGCAATCAACTCTGTTGCATCGATATCGAGCATATTTGCCCGTTACCGTGCTCAAAGACTCTAAGCTGCGGTCGTCACAAGTGTCAGGAAAGATGTCACATAGGACGATGTCCTCCCTGTTTACAAAGCAGTTTCGATGAATTGTATTGTGAGTGCGGCGCTGAGGTGATCTACCCGCCGGTACCGTGTGGCACAAGGAGACCTGTTTGCAATCGACCTTGTTCACGTCCACATTCCTGCGCTCATGAAGTGTTGCATAATTGTCATAGCGAACTTACTTGTCCACCTTGCACTGTGCTGACTCAGAGATGGTGTCACGGTAAACACGAGCTCAGGAAAGCCGTACCATGTCACGTGACTGAGCTTTCATGCGGTCTGCCCTGCAACAAGCAGCTCTCATGCGGACGGCACAAATGCATCAGAATGTGCCACGCTGGATCGTGTGAAATATCTGGGCAACAATGCACGCAGCCTTGTGGCACAAAAAGAGAACTATGCGGGCATATCTGCGGCGCTCCGTGCCACGAAGGCAAGTGTCCGGAGTTACCATGTAAAGAAGTGGTCAAGGTTACGTGTCAGTGTGGACATAGGACTTCGAGTCGTGTCTGCAATGAAAATGCACAAGAATACATGAAGATAATGAGCGTCCTGGTGGCTAGCAAAATGAAGGACATGCAGCTTGGCCATTCGATCGATTTGGAAGAAGTGTACGGACAGAATGCAAAGAAGCAAAATCAACTGAAGACTTTGGAGTGCAATGACGAGTGCAAAACAATCGAGAGAAACAGAAGACTCGCGTTGGGACTGCAGATCGTCAACCCAGATTTGAGCGGCAAATTGATGCCTCGATATACCGATTATTTGAAACAGTGGGCTAAAAGAGATCCGTTCTTCTGTCAAATGGTTCATGATAAACTAACGGAATTGGTACAGTTAGCGAAAACTTCCAAGCAGAAATCCCGGAGTTATTCGTTCGAAATTATGAATCGGGAAAAACGCCATTTCGTTCACGAGTTGTGTCAGCATTTTGGCTGCGAAAGTCAAGCATACGACGAGGAGCCGAAGAGAAATGTCGTTGCCACTGCCGTAAAAGATAAGTGTTGGTTACCGAGCTATAGCTTACTGGAAATAGTGCAGAGAGAGAAGGGGCAAAGAAAAGTTCCAGGGCCGGTACTGAACACTTCGATGGGAAATAGCTCTACAAAGTAA
- Protein Sequence
- CFCGKKTQEVPCRANVTDMYCCDNVCNKPLDCGKHYCQKVCHLEPCEFCSLAPERVTVCCCGQTPLTEKRESCLDPVPTCDKICSKSLACGRPSNPHTCKMQCHTGDCPECDLSTEVKCRCGNMNREIPCRDLTSKADDARCAKRCKKKRSCGKHNCNQLCCIDIEHICPLPCSKTLSCGRHKCQERCHIGRCPPCLQSSFDELYCECGAEVIYPPVPCGTRRPVCNRPCSRPHSCAHEVLHNCHSELTCPPCTVLTQRWCHGKHELRKAVPCHVTELSCGLPCNKQLSCGRHKCIRMCHAGSCEISGQQCTQPCGTKRELCGHICGAPCHEGKCPELPCKEVVKVTCQCGHRTSSRVCNENAQEYMKIMSVLVASKMKDMQLGHSIDLEEVYGQNAKKQNQLKTLECNDECKTIERNRRLALGLQIVNPDLSGKLMPRYTDYLKQWAKRDPFFCQMVHDKLTELVQLAKTSKQKSRSYSFEIMNREKRHFVHELCQHFGCESQAYDEEPKRNVVATAVKDKCWLPSYSLLEIVQREKGQRKVPGPVLNTSMGNSSTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -