Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: -
Assembly: GCA_014825455.1
Location: QVNV01016844.1:768-3453[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0083 0.8 10.6 2.6 2 23 227 248 226 248 0.95

2 11 0.00065 0.063 14.0 4.2 3 23 253 274 252 274 0.95

3 11 0.0025 0.24 12.2 1.1 1 23 283 305 283 305 0.96

4 11 0.046 4.5 8.2 1.4 1 23 339 361 339 361 0.97

5 11 0.00051 0.049 14.4 0.6 1 23 364 387 364 387 0.96

6 11 0.021 2.1 9.3 2.0 1 22 402 423 402 426 0.90

7 11 0.002 0.19 12.5 0.2 1 23 440 463 440 463 0.97

8 11 0.31 30 5.6 3.1 1 23 469 493 469 493 0.95

9 11 0.00051 0.05 14.4 0.3 2 23 500 522 499 522 0.91

10 11 1e-07 9.7e-06 26.0 1.0 1 23 528 550 528 550 0.97

11 11 0.0001 0.01 16.5 7.6 1 23 556 579 556 579 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0083	0.8	10.6	2.6	2	23	227	248	226	248	0.95
2	11	0.00065	0.063	14.0	4.2	3	23	253	274	252	274	0.95
3	11	0.0025	0.24	12.2	1.1	1	23	283	305	283	305	0.96
4	11	0.046	4.5	8.2	1.4	1	23	339	361	339	361	0.97
5	11	0.00051	0.049	14.4	0.6	1	23	364	387	364	387	0.96
6	11	0.021	2.1	9.3	2.0	1	22	402	423	402	426	0.90
7	11	0.002	0.19	12.5	0.2	1	23	440	463	440	463	0.97
8	11	0.31	30	5.6	3.1	1	23	469	493	469	493	0.95
9	11	0.00051	0.05	14.4	0.3	2	23	500	522	499	522	0.91
10	11	1e-07	9.7e-06	26.0	1.0	1	23	528	550	528	550	0.97
11	11	0.0001	0.01	16.5	7.6	1	23	556	579	556	579	0.95

Sequence Information

Coding Sequence: ATGATGATGCTACATTTGTATGACAATCAGGAATATTCGAGCTTTGATACTGTACCAAATATGTGCACCAACAGTGAAATAGAAAACTATGACTACTTGCAAGAACGCATCAGTGAAAGTAAATATTCTGGAGTCAGTTTATCGCCTACTTCAATTAGTACCACGGACATTGGTTTACAAGAAGGCAGCTTAGATGATGTTAATTTCAACACTATTGATTTCAACTTTCTGAAAATTGAAAACATGCTTTTGCAAGATGCAGAAGAATCTGAAAATTTTACAAAAGCTAACAAGATCAAGCAAGAACTATTAGTAAGTGCTGCTACTTCTAGCTCAATTGAAGATTGTGACACAATGAGTTTGAAGTATAATACGTTTTCCAATTTTTCAAGTACTTTAAACAAAGAATCAAATGATATAGCAACAACTATGAATACTAACAAAGTGTGTTCATTTAAAGATCTACCAACTCAGTGTTTCAAGAAAACGCAATCAGTAGAAAACAATGATTATTCCACTGAATTCCACACAGAAAACAATCAAGGTATAGACTTGAATATAGATTTTAATGTGAACAAAGATTACAATTGCACAAGACAGAATGTTGCGTCTAAATTTGAACATGGAATAAAGATTGATTGTTCAAAACAATCCAATAAAAATGAAATACAGTTGCAGAAATGTGAACAATGTTTAATGATGTTCAAGTATAAAAGACACTTGGATCGTCATTTAGAAGGCCATCAGAAAAATAATTGTTCTCATTGTAATGAAAAGTTTGCCAGACGAAAACATCTGGAAGTTCACCTATTTCGTGCACACGGAGAAAAGACAGTCAGATATCCTCATGTATGCGACGCATGTTACAAGAGTTTTCCCAAACTTGCTTTATTGAACCGTCATAAAGCCAAACACAGTTATCAAATTGATAAGATATGTTCAAAATGTGGAGACATGATAAATACAGATACTAACGAAAAAGAACATAAAGACAAATATTGCAAGAGAAGACAATTTAAATGCCAACAATGCTCACAGATATTTAGCATCGAACAAACATATTTGTCTCACCTTCAAAATCACAACAACTACAAGTGTCCAAACTGTGATGTTAGTTTTGCATCAAAAAAGAAAGCTCGCGAGCATTTTAAAGTGGTTCATTCGCTAAAATTAAATGAGCCAGAACCGATAAACAATGGTTCATATTTTTGTGTTAATTGTAGACACACATTCATAAAAAAAGATGACTATTCTCGGCACTTGGAATCTGCATTACATCTTAGTAAAGTTAATAGAGATGTACCTATAAAAGCTGTATTTCCGTGTATGATCTGCTCAAAACAATTAATCACGCAGAGAGCCCTAGATCAACATATAAGACGCATTCACAAGGGCGAAAAACGATTTGCATGTAACATGTACGGTTGTACGTTTCAGTGCTCCAGAAGGACGGATCTAGATCGGCATAAGCAATTGCACGTGGAAGAACGGAACGTCGTATGTGAACATTGCGGCAAAACATTTACCAGCGTTAGTATTCTCAAAGATCACGTACTTTATATTCACAGTAAAGAACGACAGTTTATCTGCGAAGAATGTGGTAAAGCGTTCAAGAGAAATAGCTTGCTTAAGAGACACAAATTATCACATGAGCAACATCGGCCATTCGCTTGTACACAGTGCAACACCGCGTTTAAACGGTCGCATCATCTTACTCGCCACATGGAAAATTGTCACAGAATCACTTTACAAAAGAAGAAAAAGGTGATGAAGCTCATGAAAACGGAAGATGGTCATCTTATTCCAGTGCCGGAACAACCAAAAGAATTATCATCTGTCAAAGTAAAACTTGAAAAAAAGCGCATATCAGTTGCGAAGGACGAAGAAAAAAAATTCATTACTGTAAATGCAAATAAACAAGTTGTAAATACATATTTGCAGCTGCAAGTACAATCATTGTCAAACTGTAAAGAACTTTCGCAATATTCCAACTCGTCGTTAGAACCAACAAATTTATCTGTCATCACCTCTAAACCGCAAGTACTTTCATTAGTAGATATAAATACAGGACAGTTACTTACTATAGAAGTCACCAATCCGAGCTTATTATCTACCACTGAGCAAACTGATCAACTTGAAGCAAATTGCAGTGAAATGTTAAATCTATCTGATTGCCAAAGTATAGAATTTCAAAATACTTCTTTAAATGCGGATCAAACATATTCCAACAGTACAAATCATTCTGAAGTATCATTGGAAAATATCGAAGATTTGTTCACGCTTATAAACCATAAACTAAAAACAGAAGATTATTCAAAACATGGACTCTTATCATTTCTTAATATTTAA
Protein Sequence: MMMLHLYDNQEYSSFDTVPNMCTNSEIENYDYLQERISESKYSGVSLSPTSISTTDIGLQEGSLDDVNFNTIDFNFLKIENMLLQDAEESENFTKANKIKQELLVSAATSSSIEDCDTMSLKYNTFSNFSSTLNKESNDIATTMNTNKVCSFKDLPTQCFKKTQSVENNDYSTEFHTENNQGIDLNIDFNVNKDYNCTRQNVASKFEHGIKIDCSKQSNKNEIQLQKCEQCLMMFKYKRHLDRHLEGHQKNNCSHCNEKFARRKHLEVHLFRAHGEKTVRYPHVCDACYKSFPKLALLNRHKAKHSYQIDKICSKCGDMINTDTNEKEHKDKYCKRRQFKCQQCSQIFSIEQTYLSHLQNHNNYKCPNCDVSFASKKKAREHFKVVHSLKLNEPEPINNGSYFCVNCRHTFIKKDDYSRHLESALHLSKVNRDVPIKAVFPCMICSKQLITQRALDQHIRRIHKGEKRFACNMYGCTFQCSRRTDLDRHKQLHVEERNVVCEHCGKTFTSVSILKDHVLYIHSKERQFICEECGKAFKRNSLLKRHKLSHEQHRPFACTQCNTAFKRSHHLTRHMENCHRITLQKKKKVMKLMKTEDGHLIPVPEQPKELSSVKVKLEKKRISVAKDEEKKFITVNANKQVVNTYLQLQVQSLSNCKELSQYSNSSLEPTNLSVITSKPQVLSLVDINTGQLLTIEVTNPSLLSTTEQTDQLEANCSEMLNLSDCQSIEFQNTSLNADQTYSNSTNHSEVSLENIEDLFTLINHKLKTEDYSKHGLLSFLNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01270726; iTF_01268519; iTF_01269276; iTF_01267794;
90% Identity: iTF_01270726;
80% Identity: -