Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: -
Assembly: GCA_014825455.1
Location: QVNV01004734.1:99-3323[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0062 0.61 10.9 2.8 1 23 376 398 376 398 0.98

2 7 0.0012 0.12 13.2 5.8 2 23 529 550 528 550 0.97

3 7 6.8e-05 0.0066 17.1 1.5 1 23 556 578 556 578 0.98

4 7 1.3e-05 0.0012 19.4 1.7 1 23 584 607 584 607 0.93

5 7 6.3e-06 0.00061 20.4 0.7 1 23 613 635 613 635 0.99

6 7 1.3e-06 0.00012 22.5 2.6 1 23 641 663 641 663 0.99

7 7 1.1e-05 0.001 19.7 2.6 1 23 669 691 669 691 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0062	0.61	10.9	2.8	1	23	376	398	376	398	0.98
2	7	0.0012	0.12	13.2	5.8	2	23	529	550	528	550	0.97
3	7	6.8e-05	0.0066	17.1	1.5	1	23	556	578	556	578	0.98
4	7	1.3e-05	0.0012	19.4	1.7	1	23	584	607	584	607	0.93
5	7	6.3e-06	0.00061	20.4	0.7	1	23	613	635	613	635	0.99
6	7	1.3e-06	0.00012	22.5	2.6	1	23	641	663	641	663	0.99
7	7	1.1e-05	0.001	19.7	2.6	1	23	669	691	669	691	0.96

Sequence Information

Coding Sequence: ATGGTGCGGCGGGAGGATAACATCCGGTCTAATGGCGTCAAGAGCCAAGCATTGTTGTCACATTTTGTCCTACAGTGTTTCAATATTTTGCTTTGTTTATGTTGCCCGAGTTTCGCGAAGATAGGACAGGATTTGCGATCGGGCGCGCTCGCTGAGCCGAATGGAGGTGAGGACGTGCAAATTTTTGCACGTGCGACGCATATCAAACTGGGAACGAGATTTTCCGAGTGGTATGGATGTAGTGACCTTGGTCTTGCTGTCAGACCAAAGGTGCATACACGCGGTAAATTTAAACTTGACTCGTGCCACACATTGACACGAGTCAACGAAATTTTTTGTCGTCTCAATGGAGAAAGGCGTAAACAATTGATTTCAATAGTAATATTCATTATATTGAAAATGTCTTCGAATTTGGGAAATACAACAGAAGATGCACAAACTGTGCTTCTTGAGGGAGTGGAGACTCAATTTATTATTCAGAGAAGCGATGGAGAATCATTAAGCAAGGGAGTACCGTTGTTTCTGAGTGGAGAATTAATATCAGAAGGCATGGTAGTGGACATGATCAATGCTGATGGTAGTACAGATTATAATGCGAGTGCTCAGTATTATGAAACAGATGACTTGTTGACTCACAGTTTGACAGAGAATGTCAATTGTGTGATGCAGGACGACCGTAGGCTTGCTGCAGCGCTTGTTGCAGTGCAATTGCATCAGCAGCAGAAGCAGCAGCAACTCAACGTTCAGCATGAAGACTCAGCTTTGTCTGATGTTTCTCACCTGGAGACTCTAGCGCCAGTGAATTCGTATACTATTCATACTATTCCAGAGCCAAACACCACCGCGTCTATATATACGCAAACTTTGCAACCTTTCACAAGAATTCCGCAAAGTTTGAAGCAAGAGTTCATCAATGTTAAAAGCGAGTACGACATTGAGGTTTCTACGGAGAGCAGCGAGGACGCCACGTCGGCATCCGGGCCTAAGAGAACTTTGCCACACAAAAAACGAATATCTCGCAAGCTGAAGCAACCACAGACAAAAAAGAACGCAACGCGGAAGGATAATAGCAAATCGAGTCAAGAAAACCCGACTGAATTTAATAACGAAGTTCAGGCTAACGTTTTTAAGTGTCAAATATGTAGTTCTAAGTTTAGCAGTCAGTTGAAATTCTTTGAACATTTAAAGGTGCATTACGAGCCCGTAAAACAAGAGACGCGAATAGCTCAGGCGACAAATACTAATATTACGATATCGGTCCCAGAGACAGTTCATACTTTAGAAAACACTGTAATTGAAGAATTTAGCGAACCTGAAGATCTTATGGAAGGTATTCGAGGAGTAGTGGAAGAAACCGGCGCTCACATTGATGACGACACAGATTCAGCACTGCCTTCTACGAATAACGAGTCAACAATGTGGGCAATTACAGACGTTACGGAACAAGTGCAACAGAAGGACCAGGATATTAGACCGCCGTCCGTTAACGAGAATAAAAGCTCGGAAGAAAAGTCGAAGACTGACATTCCATACACAGCTAAGAAAAAGAAATCGCCGAAAGCGCGGAAATCAAGTGACGGATTAACATGTCTTCAGTGCAATCGGTCATTCCATCATAAAAATAGCTTAGTCTACCACATGCGCTCCCATAGCGGAGAACGGCCGCATCAATGTGACATTTGTAATAAACGGTTTTTCGCTGCTAGTGCGTTAAAGGTACACAAAAGACTTCATAGCGGCGACAAGCCGTACAAATGTGAGGTGTGCGGACGACATTTCCGTCAATGGGGCGATTTGAAATATCACTCAACGAGTCTTCACTCGGAGCACAAGCAGTATCAGTGTGAATTCTGTGCGAAGGAATTCGCTCGAAAGTATTCGTTGATTGTGCACAGGCGTATACACACCGGCGAAAAGAATTATCGCTGTGAATACTGCAGCAAGACGTTCAGGGCGAGCAGTTATCTGCAGAATCACAGACGCATACACACAGGCGAGAAGCCGCACGCGTGCGTAGTATGCGGCAAACCGTTCAGAGTGCGAAGCGACATGAAGAGACACATGCACACTCACTCGCGAACGAAAACAAATGAAAAACAGTTGTCGTCGTCGAACAAACTCGTGGCGGGAAAAAATGTGATCGATTCGGAAAGCGATAAAAAAGCAGCGCACGCGAAAACGATACAAGATATTGTGAGAGATTTGAAACTGGAGGACGTCGCGTCGTCGGGTGTGATAGAGATTGTCGCTCCCGATAATCCGGAGTCTATTTTACCGCACACGAGCGGACAAAATTTGGACTACAATGTAACATCTGCAGAAGACACGGGAGCCGCAGATAGAGATCCTCTGGAAGCTGTCGTGCGAACGAATGATGGCATGTAA
Protein Sequence: MVRREDNIRSNGVKSQALLSHFVLQCFNILLCLCCPSFAKIGQDLRSGALAEPNGGEDVQIFARATHIKLGTRFSEWYGCSDLGLAVRPKVHTRGKFKLDSCHTLTRVNEIFCRLNGERRKQLISIVIFIILKMSSNLGNTTEDAQTVLLEGVETQFIIQRSDGESLSKGVPLFLSGELISEGMVVDMINADGSTDYNASAQYYETDDLLTHSLTENVNCVMQDDRRLAAALVAVQLHQQQKQQQLNVQHEDSALSDVSHLETLAPVNSYTIHTIPEPNTTASIYTQTLQPFTRIPQSLKQEFINVKSEYDIEVSTESSEDATSASGPKRTLPHKKRISRKLKQPQTKKNATRKDNSKSSQENPTEFNNEVQANVFKCQICSSKFSSQLKFFEHLKVHYEPVKQETRIAQATNTNITISVPETVHTLENTVIEEFSEPEDLMEGIRGVVEETGAHIDDDTDSALPSTNNESTMWAITDVTEQVQQKDQDIRPPSVNENKSSEEKSKTDIPYTAKKKKSPKARKSSDGLTCLQCNRSFHHKNSLVYHMRSHSGERPHQCDICNKRFFAASALKVHKRLHSGDKPYKCEVCGRHFRQWGDLKYHSTSLHSEHKQYQCEFCAKEFARKYSLIVHRRIHTGEKNYRCEYCSKTFRASSYLQNHRRIHTGEKPHACVVCGKPFRVRSDMKRHMHTHSRTKTNEKQLSSSNKLVAGKNVIDSESDKKAAHAKTIQDIVRDLKLEDVASSGVIEIVAPDNPESILPHTSGQNLDYNVTSAEDTGAADRDPLEAVVRTNDGM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01422432;
90% Identity: iTF_01267065;
80% Identity: -