Ppal015508.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- -
- Assembly
- GCA_014825455.1
- Location
- QVNV01019230.1:906-3979[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0039 0.38 11.6 0.3 3 23 446 468 445 468 0.94 2 10 0.00016 0.015 16.0 1.0 1 23 474 498 474 498 0.98 3 10 4.4e-05 0.0043 17.7 2.2 1 23 504 526 504 526 0.97 4 10 7.1e-05 0.0069 17.1 0.1 3 23 534 556 532 556 0.93 5 10 6e-05 0.0058 17.3 1.7 1 23 563 587 563 587 0.97 6 10 6.6e-05 0.0064 17.2 0.4 2 23 595 618 594 618 0.95 7 10 1.2e-05 0.0012 19.5 4.5 1 23 624 648 624 648 0.98 8 10 4.1e-05 0.004 17.8 0.5 1 23 654 678 654 678 0.96 9 10 6e-05 0.0059 17.3 1.0 1 23 684 706 684 706 0.99 10 10 0.14 14 6.7 0.5 1 23 789 814 789 814 0.95
Sequence Information
- Coding Sequence
- ATGTTTTCGAAAAAAGTTGCTACTACCGCCAGAACATCAGATCATCCCTCGAACCCATTTGTTGGACTCTACGGGTCCAGATGGCGAAATGTCCTACGTGGCAGCTTGTACAATCAGGGTTCCGTCTCATCCGAGACGGAAGAGGATGATGAGAAGGACAGAAGAATTAGGAAAAATGAGAATTGGCATCAGACAAGTAGCGGCAAAAACTCTGACAACGAGACAATAGCTGATCTTGATAAATGGATCAAGACAAGCAGCACAGAGCCTCCAGTATCGTCGAATATAGATCTAGACACAACCAAAGTACTGGAAGGCATGGATCGTTATTTAGAAGAAGAGGATCTCGGACAAGGCTGTTTTTTCAACAAAGATCCGTATGGTCTGTCCATTGACATTGATTTGGCCGATACCAAGAAGCATGATCTGTCAACAGGATATGATTCTTTATTGCAGGATCTGTCGCAAAGCGAAAATCGGCTTCTGGAACCGCCGTGCGAAAAAGTTGTCGACGAATTTATCTTGTCAGATTTTCATTTGGATCATTTGGATCCGCTAACAGCACTTTCCACAGACGACATGATAGTGGCTGGCGAGATTCTGCCATCCACAAGCAGTCAGTCAGCTCTAAATGTGGAGAATCAAGATATTGAGGAACATACTTCAAAAACAGACATTCTGGAAGACAATTATGAAAAACCAACAACAAAGATAAATATTGGAAACGTGAACAAAATGGAAATTGTCTCGCATCGACAGAAAATTGTGGATCAGTCTTCGGCAAGTTCTTCAGAATTTTTTATTGAAGAAACTTCAGAATCAGGCAAAGAAGAGTCGTCAAATTTTACGACAAATTCCGTACAAGTAAACAGTCAAGATATTATAATAGAGCAATTAAAGGCCAAGGCTAGAATAAAATTTGAACCGCGTATCATTAAAAAACATCGGCGAATGAAGAAGAAACTCGAGGAAAGGTTAGACAACCCTGTCAATGGTAAGAAGGTTGATGCCACGGATTCGCAGGACAATGTTATGACAGTGGTTGCCATATCGACCGACAAGATCTCCAACATGACGCAGATAGTCATCAACAATGGCACGCAGAAGAAGATAATTAAGAGCAAAACTTCGGAATTAATTAAAGCAACCGGCAATTTCCCAAATCTACCTAAAATAGATACTTCAGCAGCTTGGAATGGTACTGTTGAACATGACACTGATAATGTTCCGACTAATCAGTATGAAATTGTTATATCCAATGAACTGGAGGAACTAGGCATCACGGACGATAGCTTGCAACCTGTACGTATCACCGAGCGTGACAAGGTGTGGCTTTGTCCCCGAGATGGCTGCAATAGGCAGTTCAGCAGATTGTACACTTTGAAAGGTCACTTGTTAGCTCACTACGGAGTTAGGCCGTTTAAGTGCGATTTCGAAGAATGCGGTTGGGCTTTTTATTCCGAATTCAAGCTGAAAAGACACAAGGAGACGCATCTGAAACGCAAGGATCACGTGTGCGAGATCTGCAATCGTCGCTTCACTACCGTCTACAATCTATGGAGCCACAAGAAGTTGCACAGTCGTCCGAATCGAATTGTTTGCCAGGTACCGGAATGCGGAGAGAAGTTTCAGACCAAGCGAGCATTGGAGCTGCACATGAGGTCGCATGATCAACGTCACGCGCCCTACGTGTGCCAGCACGAGGGTTGCGGCAAGCGTTACTACAGCAACAACGCGTTGACATCGCATCAGCGTTCTCACAGCTACAAGGAGGTGGACATCAAATGCTCGTGGCCGGGCTGCGGCAAGGTTTTCGACAAACCGTGTCGTCTAAAGGCCCACATACGCTCTCATACCGGATGCAAACCATATCGCTGCACGTTTCACGGCTGCAAGTGGGCGTTCTCGTCATCCAGCAAGCTCAAACGTCATCAGAAAACGCACACAAACGAGCGCAAGTTCGTATGCGACACGCCAGGTTGCGGCAAAGCTTTCATGCGCTCGGAACATCTGAAAGAGCACAGCCTTACGCATACGGAAGGTCGTTACTTCCAGTGTTTCGTCTGCGACGTTCGTTTTTCCGCCAAAAGCAGTTTGTATGTGCACATTAAAAAGCATCAGCAGACAGCCAAGATGGACTTGAATATGATCGGTAACAATACACCAACGGGATGTAACACCGGTGGTTTAAAACGCGCGAGAGAGTCACACGGTTCGCAAGTGAAATCGAGTGCCAAAACGAAAGCAAAGTCCAAGAATGTGATAAACGTCGCGAAGAGTGTCGCGACGGAGCACATTGTCGAAAAGCTGAATGTGACCCACGATAACGTGCCCTTTGTAAACCAAGATCAACCGAAATGGTTTCATCGTTGTCCGTTAGAGATGTGCGGGCATTTGGCCGGCAGCGAAACGAATCTGCGTGAGCACATGTTGAAAGCGCACGATATATTGGATGACGATCCGTTGAACAACTCGCCGCCGAACGCGGGCATAGACTACATTCTGTACACAGTGCATTCTTCACCGGGCTCACCCGCAGCCGTTAAAGAAGAGCAGATGGTCATGGTGTCCCCGTGCAACGCCGTGATCCTCGGCACTTCGTCAGATTGTTGTTTGCCTGAATCGGAACCGCCACCTTTCAACAGCTTAATAAAGAACGTGGAACCGCTTCGAGCCAAAAAACAAATTCACAAAGATACCATAGTAATTAAGAAGGACCAGAGATCGGCAAGGACAGATCTAACATATTCGGATTGGTCCAAGTTGAAGAAAACAAAAGGTGCGGTGGTGGACTCGCTAGTGGACTCGTCGGACGTTGTGTTAGGTGCGTCTAGTGACATGGGCGAGGGTCTACTGCTCACGGAGGAACTGCCATCGATGTATTACCAGGACGACGCTGTGGGAACGGAGTACCAGGTGTTATTGCTGGACTCGGATCCGCTTGAAAGTACCGGGTAA
- Protein Sequence
- MFSKKVATTARTSDHPSNPFVGLYGSRWRNVLRGSLYNQGSVSSETEEDDEKDRRIRKNENWHQTSSGKNSDNETIADLDKWIKTSSTEPPVSSNIDLDTTKVLEGMDRYLEEEDLGQGCFFNKDPYGLSIDIDLADTKKHDLSTGYDSLLQDLSQSENRLLEPPCEKVVDEFILSDFHLDHLDPLTALSTDDMIVAGEILPSTSSQSALNVENQDIEEHTSKTDILEDNYEKPTTKINIGNVNKMEIVSHRQKIVDQSSASSSEFFIEETSESGKEESSNFTTNSVQVNSQDIIIEQLKAKARIKFEPRIIKKHRRMKKKLEERLDNPVNGKKVDATDSQDNVMTVVAISTDKISNMTQIVINNGTQKKIIKSKTSELIKATGNFPNLPKIDTSAAWNGTVEHDTDNVPTNQYEIVISNELEELGITDDSLQPVRITERDKVWLCPRDGCNRQFSRLYTLKGHLLAHYGVRPFKCDFEECGWAFYSEFKLKRHKETHLKRKDHVCEICNRRFTTVYNLWSHKKLHSRPNRIVCQVPECGEKFQTKRALELHMRSHDQRHAPYVCQHEGCGKRYYSNNALTSHQRSHSYKEVDIKCSWPGCGKVFDKPCRLKAHIRSHTGCKPYRCTFHGCKWAFSSSSKLKRHQKTHTNERKFVCDTPGCGKAFMRSEHLKEHSLTHTEGRYFQCFVCDVRFSAKSSLYVHIKKHQQTAKMDLNMIGNNTPTGCNTGGLKRARESHGSQVKSSAKTKAKSKNVINVAKSVATEHIVEKLNVTHDNVPFVNQDQPKWFHRCPLEMCGHLAGSETNLREHMLKAHDILDDDPLNNSPPNAGIDYILYTVHSSPGSPAAVKEEQMVMVSPCNAVILGTSSDCCLPESEPPPFNSLIKNVEPLRAKKQIHKDTIVIKKDQRSARTDLTYSDWSKLKKTKGAVVDSLVDSSDVVLGASSDMGEGLLLTEELPSMYYQDDAVGTEYQVLLLDSDPLESTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268473;
- 90% Identity
- iTF_01267757;
- 80% Identity
- -