Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: -
Assembly: GCA_014825455.1
Location: QVNV01001841.1:42072-45082[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0053 0.51 11.2 2.2 3 23 29 50 27 50 0.95

2 10 2.6e-05 0.0025 18.4 1.2 1 23 56 78 56 78 0.96

3 10 2.5e-05 0.0024 18.5 3.4 1 23 84 106 84 106 0.97

4 10 4.2e-06 0.00041 20.9 1.8 1 23 112 135 112 135 0.97

5 10 1.5e-06 0.00015 22.3 0.5 1 23 686 708 686 708 0.97

6 10 0.00044 0.043 14.6 0.9 1 23 715 738 715 738 0.94

7 10 8.4e-05 0.0082 16.8 0.2 1 23 746 769 746 769 0.97

8 10 0.0035 0.34 11.7 10.3 1 23 775 797 775 797 0.97

9 10 8.3e-05 0.008 16.9 6.1 1 23 803 825 803 825 0.99

10 10 3.4e-06 0.00033 21.2 1.7 1 23 831 853 831 853 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0053	0.51	11.2	2.2	3	23	29	50	27	50	0.95
2	10	2.6e-05	0.0025	18.4	1.2	1	23	56	78	56	78	0.96
3	10	2.5e-05	0.0024	18.5	3.4	1	23	84	106	84	106	0.97
4	10	4.2e-06	0.00041	20.9	1.8	1	23	112	135	112	135	0.97
5	10	1.5e-06	0.00015	22.3	0.5	1	23	686	708	686	708	0.97
6	10	0.00044	0.043	14.6	0.9	1	23	715	738	715	738	0.94
7	10	8.4e-05	0.0082	16.8	0.2	1	23	746	769	746	769	0.97
8	10	0.0035	0.34	11.7	10.3	1	23	775	797	775	797	0.97
9	10	8.3e-05	0.008	16.9	6.1	1	23	803	825	803	825	0.99
10	10	3.4e-06	0.00033	21.2	1.7	1	23	831	853	831	853	0.98

Sequence Information

Coding Sequence: ATGAAGACTTTGAACAACGTAAATGTACAAAAAGCAACAGTGAAGTTGCAACGTAATTGTCGCAGCGTGCTGAAGATTCACCTGTGTCCCCAATGCGGATCCTATTTCGATCGCGCTTCCCAACTTGATTATCATCATCGGAGCATACATCTGGGAGAGCGATCTCACATATGTCAGATATGCGAAAAAGGTTTCTTTCGCAAGGCGGACCTGCGTACTCACTTGAACATCCATTTGGGAACGAACTTTTACATATGTGAGGTCTGTGGAAGAAAGTTCAGTCATGTGTCCAATCTCATAAGGCACTGCAGAATGCATACAGGAATCAAGCCGTACTCGTGCTCCATTTGTGACAAGCATTTCACGCAAATTTCCTCACTGGCAAGGCACAAACAAATGATACACGGAATACCAAAGGAAACTGCGCAACAGTATTGCAATCCTAGTCTCATAAGAGAACATCAATCACCATCTAGCAATGAAGTATTGAAAGAAAATAAGGATCAGTTTGCTGAGATTGCGGAAAGACTTGGATTCATTGACATGTCGATGGATAAGACAACTGCTTCAAACTCCGTTTACGATACATTCAACAATCACGAACAAACGCAATTCAAGGACAATAAAGTTTCCACAAATAATTCCGAAAAAGACAACTTAACGTATTTTTTTCTACCGCGAGATAGAGGGCCTAATGCGGAATCAGATCACACTCCAAACGACGAAAACACCTTGGGAACGTGTTACGCGAGCACGTGTGCAGCTCAAGAAGCTTGTAAAGATACTTCGATCAACAATATCGAAGTGAACTTTCAACTCGCCAATGAAGTGTCGGAACCGAAATTCCTACACAAACAAACAGGCGCGGAAGTTATTAACGAAGACAAGAAGTGCAATAAGTCATTGAACGAAAGTGCCGATCAAATGCACGTAGAACTTTCTAACTCGGGAATATTAAAATTTGACGAGTCCAGGTATTGTGCCGACACGGACAAGGTAAACCTCGACCACTCTATGAAGTCCCATCTTGTAAATATTGCTGATGTAACGTGTACTCCTGCCATCGCGCAACATCAGAACAATTTGACGCACGACGAGGAGAATCTAGACGGTTTCGGTAACTCGAGCAACGTGGTGTTGAATAACGAGGAACCGATGTTGCGTTTGGTGCAGACCGAGACTGGTGAACAGTTTTACGAATTCGTGATAAGCAACTTGGTGGAAAAGATACAAAACGCGAAGGACACGGAGAATAAAATCGACGAATCGTCGAACAGCTCTGGAGACTGTCAAAAGATTGTTGCGAATTCGAAGGAGATTGCGGAGAAAAATGATCATCAGATCGATCATCAGCAACAGGACTTGGAAAGTTTCACCGACGAATTTAATTACACGCAGTTCGATTTTCACGGAGAGGAGAAGAACTTCACCATCCTGTGCGACGACGAGTCCGAAAATTTCCAACGAAATTCCAAGGAGAACGAATGCGGCACGCAGGACAGAAGCATGCAGATCTACAAGTCCGAGTTTCTCGAACTGCTCGAAAGCGACTTGCACGTGGATTTTGACAAGTACGTCGAGACGAATCTGGAGGCGTTCGAGAAATTTAGTTACGAAAATTGTAACAGATTTCTGGAACTCGTGGAGGTCGCGGATCTCGGTATGGAATCCTCGGAGTGCAAGGAATCTTCGATGATACGCTTGATACAAAATGCGGGCGAGCAGCTGTTGGAGTTGTTTCAGGATTCTCAAGCGGTCGAGCAAGAGTCGAATCAGGATTTCGCGCAATCCAACGATCTCGACAAAGACTGTTCGAATATTTTGCAAGACGCTAATAAAACAGCCGATTGTCCGAAGAGCAAACCCGATTTGTTCAAGTACATCGAAGACAATGTGACATTGGAGGAAAATGTAAATAGCAATCAAGTCGCGGAGAGCGTCAGGGAGCACGCAAGCAGCAACGATCGTGCCGAAGTGACCGGTAAAGACGCAAACAACGAGAACAGCGTCAAAGTGTCCGGGGAAACAAAGAAATCGAAGGTCACTTTGAAGAAGTTTCAGTGCTCCGAATGCGAGAAGGCATTCTCGACCGCCTACAACTACAAGCAACATATCGGAATACACTTCACGGATCAGCAGAAGTTCCACTGTAAGACCTGCGGAATATCCTTCGCGTGGAAGTCCACTTTGAACAAGCACATTGCGAACGTCCACAGTCCGGACGGGCCGCAAAAGTTTATCTGTGATATTTGTCCGAAAATTTACAGCACCTTGTCACAAGTAAAAGAACACGTGAAACGGGACCATTTGAAGCAGCGCGATCACATGTGTCTGCATTGCGGGAAGTGTTTCTTCAAAAAGTTCGACCTGAAAACTCACAGCCGGACGCACACGAACGAACGTCCTTACGTGTGTCGCGTTTGCGGTCGCAGTTTTCATCATCAGAGTCACATCATACGTCACGAGCGCACGCACTCGAGCGAGAGACCGTTCGTGTGCGACGTTTGTCAGAAGACGTTCGCGCAGTCGAACTCGCTGAAAACGCACAGACAGAAGCACCGACAGCAGATCCGACTGGATTTTCTGGACTGTCAGATGGACGAGGACGATCCCGTCGCACTGGCGACATGTTGA
Protein Sequence: MKTLNNVNVQKATVKLQRNCRSVLKIHLCPQCGSYFDRASQLDYHHRSIHLGERSHICQICEKGFFRKADLRTHLNIHLGTNFYICEVCGRKFSHVSNLIRHCRMHTGIKPYSCSICDKHFTQISSLARHKQMIHGIPKETAQQYCNPSLIREHQSPSSNEVLKENKDQFAEIAERLGFIDMSMDKTTASNSVYDTFNNHEQTQFKDNKVSTNNSEKDNLTYFFLPRDRGPNAESDHTPNDENTLGTCYASTCAAQEACKDTSINNIEVNFQLANEVSEPKFLHKQTGAEVINEDKKCNKSLNESADQMHVELSNSGILKFDESRYCADTDKVNLDHSMKSHLVNIADVTCTPAIAQHQNNLTHDEENLDGFGNSSNVVLNNEEPMLRLVQTETGEQFYEFVISNLVEKIQNAKDTENKIDESSNSSGDCQKIVANSKEIAEKNDHQIDHQQQDLESFTDEFNYTQFDFHGEEKNFTILCDDESENFQRNSKENECGTQDRSMQIYKSEFLELLESDLHVDFDKYVETNLEAFEKFSYENCNRFLELVEVADLGMESSECKESSMIRLIQNAGEQLLELFQDSQAVEQESNQDFAQSNDLDKDCSNILQDANKTADCPKSKPDLFKYIEDNVTLEENVNSNQVAESVREHASSNDRAEVTGKDANNENSVKVSGETKKSKVTLKKFQCSECEKAFSTAYNYKQHIGIHFTDQQKFHCKTCGISFAWKSTLNKHIANVHSPDGPQKFICDICPKIYSTLSQVKEHVKRDHLKQRDHMCLHCGKCFFKKFDLKTHSRTHTNERPYVCRVCGRSFHHQSHIIRHERTHSSERPFVCDVCQKTFAQSNSLKTHRQKHRQQIRLDFLDCQMDEDDPVALATC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01270695;
90% Identity: iTF_01267034;
80% Identity: -