Ppal020741.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- -
- Assembly
- GCA_014825455.1
- Location
- QVNV01012375.1:30832-34221[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.091 8.8 7.3 0.2 6 21 12 27 6 28 0.86 2 14 0.82 79 4.3 0.0 2 20 34 52 33 54 0.91 3 14 3.9 3.8e+02 2.1 0.3 1 12 241 252 241 261 0.88 4 14 0.013 1.3 9.9 3.1 1 23 375 397 375 397 0.97 5 14 8.2e-05 0.008 16.9 0.9 2 23 401 422 401 422 0.97 6 14 0.0025 0.24 12.2 4.5 1 23 433 455 433 455 0.97 7 14 0.017 1.6 9.6 0.3 1 23 474 495 474 495 0.81 8 14 0.00036 0.035 14.8 0.1 2 23 501 522 500 522 0.95 9 14 4.7e-05 0.0046 17.6 4.8 1 23 582 604 582 604 0.99 10 14 2.1e-06 0.0002 21.9 3.7 1 23 610 632 610 632 0.96 11 14 0.00024 0.023 15.4 4.1 1 23 638 660 638 660 0.97 12 14 1.4e-06 0.00014 22.4 0.8 1 23 666 688 666 688 0.98 13 14 3e-05 0.0029 18.2 0.2 1 23 692 714 692 714 0.99 14 14 0.00039 0.038 14.7 0.2 1 23 722 744 722 744 0.97
Sequence Information
- Coding Sequence
- ATGGGCTCGTTAAACCTCATTTGTCCTATGTGTTGCGGTGAAACCTTCAATAATCCTCTATCTCTCAAGTACCATTTGTTAAGTATGACAGACAATCTCTATTGCCCTGGCTGTTCGCAGCGTTCTGACTCTGTGACAGCGCTCATTCAGCATCTGGACAAGTGTGAGCAAGATCTAGAACACGAAGTGAAGCCCAACATCTTCGGGAACGAGTTCTGGAAAGCCAGTATGGAGTCTGAGGCCAAGATAAATATTTTAATGGATAGTAAAACAACACAGCAGATCAATCAGAGCATTCTCGCGACAGTGAACAACAATGGAGTTGTCATAGTGGATGATCAGCAGACTATACAAATGGATGAAAATGGAGAGATTAAAGTCGTAGAAAAAATGGACATGGAAGAAACGCAACCAGATCTAAATTCTCTGGATTTCAAGATACCCGAAGGACTTCCCGATGCTGGCGGTGCTGGAATGCAAAGAAGACTGCAGCTATCGCAGAGATTGGTAGCTATACCCGTATCGAACACCAATACAGAGTGCAAAATAACACCAGTGGAGAAAAATATCATTGCCGTGTTGCCTGATAGTTCCGAACTTTTCGACGGTGCTGATACCACATTGATTGATATAGATCGTGTGAATGAGGCAGGGGATATTGGCGATACCAATGTTCTGCGAGTTAAGCAAGAACTAGCTGAGATGGAATCTAACGCTATATATAGTTGTACTAGTTGCGAAATCAGTTTTAATTCCGTTCTGGAGCATATCAAACAGTTTCACGATGGCCAAGAAGTTCTGTTGGAGATGGCGGAACAATTAGACGACTTGACAACAACAATACCTTCAAATTTGGTGTCTGCGGCGCCAGAGAATACTGAAAATTTTGTAAATGCGCGACAACGGCAGACAATGAATACGCTGCGCACGGAGGAATGTGTGGACAGCGAAGGTAGACTGTATACCAGGAAGGTAGTTCAGATCGAAAGATTCTGGGACCGCACGCCAATTCAAGTCACAACGTCGCAATCGGCGAAAGCTCCGATGATCGAGAAGTTCTTCTCGAACGTGGAGGGCGTTAAGGTACGAGAGAAGCGTTTGGCGACTGCATCAGTACGAATGTACAGGTGCAATCAATGCTTGCAGCAGTTCTCCAAGTTAGGAAACTTTCGTGTGCACGCCTGTCTCCATGGCAACAATCGTTGCGAGCACTGCGACCAAAGCTTTGCGACCCTCAAGGCCTTGCAACTTCATGCGAAAGTACATGAGGGTGATGTAGATCCGAGCCAGAAGACTTTTATTTGCGCCACATGCGGTACCGAGTTCTGCTCTCACAAAAGTTTGCGATTGCACTCAAGAATGCACGCTCCTGTAAGGGCCAGACACGTGGATGCACCCGAAGGAACTCCTAATGCAACTTTTACTTGTCCGGAATGCGGTAAAACTCTGTCGGAGTCGTACAAAGACGCACACATGACGTTACACACCGGTGACTCGGTGACGTGCACCATTTGCAATAGAAAGTTCGATTCTGCGGACAGTTTGGCGATGCACGCGGCGGTGCACACCGAACTAGCGCTTACTCCGCAATCGCCTACTCTTCCCGTTTCTATCGCAACCCTGGTCACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAACCTTATCAGTGCCAGCATTGCGGTCGCAGATTTACCAGACCTCACGAAAAAGTGAAACACGAGCGTATTCATACCGGGGAAAAGCCGCACGCCTGCGAGGTTTGTGGCAAGACCTTTCGAGTATCTTACTGTTTGACACTACATATGCGTACGCATACCGGTGTACGACCCTACGCCTGCCAGCACTGCGGCAAACGCTTCAAGGCATCGTCCGTGTACAATCATCACTTGCTGACGCACGGCGAAGAGCGCGCCTATACATGTCCATATTGTCCGAAGACTTTCAAGACGCGAGTGCAATTAGCCGGTCATAAGAACAGTCACACGAAACCGTTCCGATGCACCGAGTGTTCGCGACCATTTGCGTCTTTGTACGCCGTTCGTGCGCACATCCAGACGCATAAGAAGGACAACAATCTGAAATTCAGCTGTTACATATGCGGCGCATCGTATGGCCGAGCATTTGCCTTGAAAGATCACCTAAAGCAGCACGGCCAGGATGTACTGGCGCCGCCGGAACCGGCGCGAGAAGAAGAGATTCACGAGAACTTTCTCCTCGGTGAGGAAGAAGCCGAAGATGATGTTTTTGTAGCACCATCATCCTCGCTCCCTATCGTCACGCGTTCTCCCAACGCGAACGACATCGTTTGA
- Protein Sequence
- MGSLNLICPMCCGETFNNPLSLKYHLLSMTDNLYCPGCSQRSDSVTALIQHLDKCEQDLEHEVKPNIFGNEFWKASMESEAKINILMDSKTTQQINQSILATVNNNGVVIVDDQQTIQMDENGEIKVVEKMDMEETQPDLNSLDFKIPEGLPDAGGAGMQRRLQLSQRLVAIPVSNTNTECKITPVEKNIIAVLPDSSELFDGADTTLIDIDRVNEAGDIGDTNVLRVKQELAEMESNAIYSCTSCEISFNSVLEHIKQFHDGQEVLLEMAEQLDDLTTTIPSNLVSAAPENTENFVNARQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRTPIQVTTSQSAKAPMIEKFFSNVEGVKVREKRLATASVRMYRCNQCLQQFSKLGNFRVHACLHGNNRCEHCDQSFATLKALQLHAKVHEGDVDPSQKTFICATCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLSESYKDAHMTLHTGDSVTCTICNRKFDSADSLAMHAAVHTELALTPQSPTLPVSIATLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEIHENFLLGEEEAEDDVFVAPSSSLPIVTRSPNANDIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267740;
- 90% Identity
- iTF_01269986; iTF_01269228; iTF_01268462; iTF_01267031; iTF_01267740; iTF_01270689;
- 80% Identity
- -