Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: -
Assembly: GCA_014825455.1
Location: QVNV01020708.1:1151-3106[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.7e-06 0.00026 21.5 0.7 1 23 12 34 12 34 0.97

2 15 0.00014 0.014 16.1 2.4 1 23 40 62 40 62 0.97

3 15 1.5e-06 0.00014 22.4 3.2 1 23 68 90 68 90 0.98

4 15 0.00019 0.019 15.7 4.1 1 20 96 115 96 118 0.90

5 15 1.9e-07 1.8e-05 25.2 2.8 1 23 124 146 124 146 0.95

6 15 0.00016 0.015 16.0 0.7 1 23 152 174 152 174 0.97

7 15 8.6e-06 0.00084 19.9 4.9 1 23 180 202 180 202 0.99

8 15 0.032 3.1 8.7 0.3 6 20 212 226 208 227 0.92

9 15 0.00032 0.031 15.0 3.0 1 23 235 257 235 257 0.96

10 15 5.8e-06 0.00057 20.5 2.4 1 23 263 285 263 285 0.98

11 15 5.4e-05 0.0052 17.4 0.9 1 23 291 313 291 313 0.94

12 15 0.00034 0.033 14.9 5.6 1 23 319 341 319 341 0.98

13 15 0.00078 0.076 13.8 4.8 1 23 347 369 347 369 0.96

14 15 0.0059 0.57 11.0 0.3 1 17 372 388 372 388 0.94

15 15 0.012 1.2 10.1 0.3 1 14 400 413 400 416 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.7e-06	0.00026	21.5	0.7	1	23	12	34	12	34	0.97
2	15	0.00014	0.014	16.1	2.4	1	23	40	62	40	62	0.97
3	15	1.5e-06	0.00014	22.4	3.2	1	23	68	90	68	90	0.98
4	15	0.00019	0.019	15.7	4.1	1	20	96	115	96	118	0.90
5	15	1.9e-07	1.8e-05	25.2	2.8	1	23	124	146	124	146	0.95
6	15	0.00016	0.015	16.0	0.7	1	23	152	174	152	174	0.97
7	15	8.6e-06	0.00084	19.9	4.9	1	23	180	202	180	202	0.99
8	15	0.032	3.1	8.7	0.3	6	20	212	226	208	227	0.92
9	15	0.00032	0.031	15.0	3.0	1	23	235	257	235	257	0.96
10	15	5.8e-06	0.00057	20.5	2.4	1	23	263	285	263	285	0.98
11	15	5.4e-05	0.0052	17.4	0.9	1	23	291	313	291	313	0.94
12	15	0.00034	0.033	14.9	5.6	1	23	319	341	319	341	0.98
13	15	0.00078	0.076	13.8	4.8	1	23	347	369	347	369	0.96
14	15	0.0059	0.57	11.0	0.3	1	17	372	388	372	388	0.94
15	15	0.012	1.2	10.1	0.3	1	14	400	413	400	416	0.89

Sequence Information

Coding Sequence: ATGCATTCAAAAATTCATTTAACTGAGAAACCGTATATCTGCGAGACATGTGGAAAAGGTTTCATAAGCAACTACCATCTGCAAGAGCATTTGGTAAGTCATTCAACAGCGAGGCCGTTTAAATGCGACTCATGCGGAAGGAATTTCAAATCCAAGCATGTCCTGCAAGTGCACGAGAAAGGCCATTTGAGTAAAAAACCGTTCATCTGTGACAAATGTGGAAAAGGTTTCGTGACCAGGCACAACCTGCATGTGCACCAAAAAATTCATTTGAATTTAAAGCCGTTTGCCTGTGATAAATGCGAACGAAGTTTCAAGGACAAACACAAACTGAGACGGCATTCTGTATTTCATTCGTCTTTGAGGCCGCACACATGTAAAGATTGCGGAAAAAGTTTCAAGACCAAGGATAATCTGGCCCAACACAAGGAACTTCATGTATCTTCAAAAACGTTCATCTGCGACAAGTGCGGAAAAGGTTTCATGGCCAAGTACAAACTACAATATCATTTGGCGAGACACACATCTTTGAGACAGTATAAGTGTAGGGAGTGCGAAAAGAGTTACAAGACCAAGGACTGCTTGGTGAAGCATGAAAGAACTCATCCGTCCGCGTATCCGTATAAATGCAGATGTGGAAAAAGTTTCGAGACCGAAGCCAAACTGAAGCTGCATGTGTCTTGTTGTCTAAATTTGAGACCGCATAAATGTATAGAATGTAAAAAAGTTTTCAAAGAGAAGAGAGCCTTACGAACACATCAGATAACTCACTTCTATTCGAGACCGTTTTACTGTGACTTATGCGGAAAGGGTTTTACACTCAAGCATAACCTGAAGATGCACTTGATACGTCATTCATCTTTGAAACCGTATAAATGTAATATATGCGGAAAAGCGTTCAAAACTAAAATGGTCCAGCAAGTGCATGAAAAAAATCATTCGAGCACAAAACCGTATACCTGCGACAAATGCGGAAAAGGCTACGTGACAAAACACTGTCTGCAAATGCATTTCCTGAGACATGCAGCTCCAAGGCCGCACAAATGTATGAAATGTGGAATGGGTTTTAGATTCAAATATGATCTAAAACAGCATAATAAAAATCACCTAATTTATTATTGCAGAATTTGTAACCGGTCTTTCGAGACAGCTCGAGATTTAAAGTGCGATTTGAAAATGCACTTGTCTTCGGTATCGCATAACTGTCAAGTATGTGGGCGCGCTTTCAGCCGCCAAGAGAAGCAAACCGTTTATAACTCCCAAACCGACGAGAACTGTTCAGTCGATCGAGAAAAAAAACCAGATGTATAA
Protein Sequence: MHSKIHLTEKPYICETCGKGFISNYHLQEHLVSHSTARPFKCDSCGRNFKSKHVLQVHEKGHLSKKPFICDKCGKGFVTRHNLHVHQKIHLNLKPFACDKCERSFKDKHKLRRHSVFHSSLRPHTCKDCGKSFKTKDNLAQHKELHVSSKTFICDKCGKGFMAKYKLQYHLARHTSLRQYKCRECEKSYKTKDCLVKHERTHPSAYPYKCRCGKSFETEAKLKLHVSCCLNLRPHKCIECKKVFKEKRALRTHQITHFYSRPFYCDLCGKGFTLKHNLKMHLIRHSSLKPYKCNICGKAFKTKMVQQVHEKNHSSTKPYTCDKCGKGYVTKHCLQMHFLRHAAPRPHKCMKCGMGFRFKYDLKQHNKNHLIYYCRICNRSFETARDLKCDLKMHLSSVSHNCQVCGRAFSRQEKQTVYNSQTDENCSVDREKKPDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01267016; iTF_01269966; iTF_01267729; iTF_01270675; iTF_01268444; iTF_01269216;
90% Identity: iTF_01269966;
80% Identity: -