Ppal001499.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- -
- Assembly
- GCA_014825455.1
- Location
- QVNV01025640.1:23370-28071[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.65 63 4.6 0.2 10 23 2 15 1 15 0.93 2 18 0.099 9.7 7.2 4.0 2 20 21 39 20 43 0.82 3 18 3.5e-05 0.0034 18.0 1.4 1 23 50 72 50 72 0.95 4 18 1.4e-06 0.00014 22.4 1.2 1 23 76 98 76 98 0.99 5 18 0.026 2.5 9.0 1.1 1 23 104 126 104 126 0.94 6 18 9.2e-06 0.00089 19.9 0.6 1 23 132 154 132 154 0.98 7 18 0.00019 0.019 15.7 3.1 1 23 283 305 283 305 0.97 8 18 0.36 35 5.4 3.4 1 21 342 362 342 363 0.93 9 18 0.00022 0.022 15.5 1.8 1 23 371 394 371 394 0.94 10 18 0.038 3.7 8.5 5.6 3 23 466 487 465 487 0.97 11 18 0.0053 0.52 11.2 2.6 1 23 500 523 500 523 0.96 12 18 0.02 2 9.3 1.7 1 23 537 560 537 560 0.95 13 18 4.3e-06 0.00041 20.9 1.0 1 23 566 589 566 589 0.96 14 18 0.016 1.6 9.6 0.8 3 23 596 617 594 617 0.94 15 18 0.0024 0.23 12.3 1.4 1 23 622 645 622 645 0.97 16 18 2.8e-08 2.7e-06 27.8 0.4 2 23 652 673 651 673 0.97 17 18 1e-06 0.0001 22.8 0.4 1 23 679 701 679 701 0.98 18 18 4.9e-07 4.8e-05 23.9 0.1 1 23 707 729 707 729 0.98
Sequence Information
- Coding Sequence
- ATGTTCAAGGTCCAGTCCGATTACACGACGCACATGAAGGACCACGACACGGAGTCCTGCGTGTGCGACATATGCGGCACGTCTTATCCGAGCAAAAGCTCGCTGTACTTTCACAAGCATTACAAGCACAAGATCAAGGTGAAAGAGTTCGAGTGTCAGGTGTGCAAGAAGCGCTTCAAGACCCAGAAGAACCTCGACAGTCACGCCGAGCTGCACAAGACGAAGTACGTCTGCGAGCAGTGCGGCATGGAATTCAAGTTCAGATACGGTCTGACGAAGCACCTCAGAACGCACTCGGGCGAAAAGTCGTATCTCTGCGCGATATGCGGCAAGACCTTCGGTTGTCTCAGCTCGCAGAAGATCCATCTGCTTACCCACGTTGGCGAGAGGCCTTACGTCTGCGACATTTGCGGCCAGAGCTTCACCCAGCGGTCGCCGATGATGTTGCATCGGAAGAAACATCCCGGGGTGCATCCACCGCCACCGCCCATCAAGATCACCAATCTTCTGCACGGTGTGCAGGATAAGATTATTGTGAATAAGAAAGAAGAGAACTGCAGCAAGAAGATCTTGCGGATGGATGATCCTGGTTTTGTAATCAGAAAAGATATGCCAATGAAACTGTACCAGCACGTCGATGCCGATGGTAATCTACGCTATTCGCTTGTACCAAAGTTTGAAAACACAACTGATACTGTAACCGATAAAGACGTGAATGTACTGAATGTACAGCTGTTGTTCCCTGTTGAAGTCAAAACCGAGGATCAATCGAACAATCAGAAAACTGATCACTGTAGCGTCGACTCTGTCACAGAGACCGCGACGCCGAGTAATAAGACCGTTTGTTTCGCTTGTAACAGATGCAATATGAAGTTTCCCACGCATTCTATGCTGAATCGTCACAAAATAACACACACTGTGCGTTACTGTATCTTCGAACAGCCGCACGTTGTAAAAACACGAAAGAAGAAACGCATGGAAAGCGTGACAGAAAAAACGGAAAAGACAGACGAGAAGAAGACGTTCAATTGCACGAACTGCAATTACGAATGTTCAAGTGAGGAGGATCTCGGGAATCATACGTGCAAGCTTGAAAAGAGCGAAACGAATTACGTTTGCGACGTGTGCAATTACGAGTGTAAAAGAAGCACCACTCTGACGGCTCACATGGTACAGTTTCACAAATCTGAGAAAAGCCCGAACGCACGTATCGATGAGAAACGTGCAACATCGTTTAGGAAAAGTGCGTCGGTTTCGCACAATACTTCCGACGTAACGGTGGTCAAAGAGGAAGTGTGTCCGGAAGAAGAACGCGGCGAGACGTCACAGGACGCCGACACAACAGCGGAGCTCGCCAACCAGATGAGTTTCATACGTCAACCACATCAGTTGCTCTGTGACAAGTGCGATTTCAAGTGCACGAACAAGTCCACGTTGTACTCGCATAAGCAACGTCGACACAGAAAACGCGCGAGATCAGTGGTGAACACCGAGGTGTATTCCTGCGACGTGTGCAGCTTCAAAACCACCAAGAAGTCGTCGTTGTCCTCGCACATATACCGGAAGCACCGGGACCCGCCGGGTGGGGTAAACGCGGAACCGGAATTGTTCTCTTGCAGTCAGTGCGACTACAAGAACAAGAACAAGTACGAGTTAAAGATACACGTCGCGCGCAAGCACACGGAGGACTTCAAATATTCTTGCGAGACCTGCGGCAAGAGGTACAAGGTCAAGGGCGATCTGACGAATCACATACGTTTCAATCACCGCGAGCAGCCGGTGATCTGCGACGTCTGCGGCAAGACCTGTCTCAACAGCAATTCGCTGTACGTGCACCAGAAGTTCGCGCATTATAAGGCCAAGTACGAGTGCCATTTGTGCAAGAGGCGAATGGTCAGTCAGGAGAACCTCGACGAGCACATGCTCAGGCAGCACGAGCGCAGAGAGAACGTGGTGTGCGAGGAGTGCGGCAAGACGTTCTCGCGAAATAGCAGATTGAAGATACACATGAGAATCCACACCGGGGACAAACCCTACCCGTGCACCATCTGCAGCAAGTCCTTCGCCCGCAGAACCGCTTTGAAGCAGCATCTGCTCATTCACACCGGCATCAGACCATACGTGTGCGACATCTGCGGCAAAGCGTTCACTCAGAAGCCCGGTCTGATCAGTCACAGAAAGTCCCATCCGGGTCCTCACCCGCCCTTACCGCGTGTTCTGATTGATCATATTCTGAGTAACGTCATGAACAACACGTGA
- Protein Sequence
- MFKVQSDYTTHMKDHDTESCVCDICGTSYPSKSSLYFHKHYKHKIKVKEFECQVCKKRFKTQKNLDSHAELHKTKYVCEQCGMEFKFRYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRKKHPGVHPPPPPIKITNLLHGVQDKIIVNKKEENCSKKILRMDDPGFVIRKDMPMKLYQHVDADGNLRYSLVPKFENTTDTVTDKDVNVLNVQLLFPVEVKTEDQSNNQKTDHCSVDSVTETATPSNKTVCFACNRCNMKFPTHSMLNRHKITHTVRYCIFEQPHVVKTRKKKRMESVTEKTEKTDEKKTFNCTNCNYECSSEEDLGNHTCKLEKSETNYVCDVCNYECKRSTTLTAHMVQFHKSEKSPNARIDEKRATSFRKSASVSHNTSDVTVVKEEVCPEEERGETSQDADTTAELANQMSFIRQPHQLLCDKCDFKCTNKSTLYSHKQRRHRKRARSVVNTEVYSCDVCSFKTTKKSSLSSHIYRKHRDPPGGVNAEPELFSCSQCDYKNKNKYELKIHVARKHTEDFKYSCETCGKRYKVKGDLTNHIRFNHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECHLCKRRMVSQENLDEHMLRQHERRENVVCEECGKTFSRNSRLKIHMRIHTGDKPYPCTICSKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGPHPPLPRVLIDHILSNVMNNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -