Ppal003077.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- -
- Assembly
- GCA_014825455.1
- Location
- QVNV01015619.1:500-2254[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-09 1.2e-06 28.4 0.0 3 39 20 56 18 59 0.93 2 2 6.5 4.6e+03 -2.3 0.0 3 14 422 433 420 440 0.78
Sequence Information
- Coding Sequence
- ATGGTTCGAAATTATAAGAAGGTAATAGGTAAGAGGCAGAAGTGCAATTATTCCACGGAATCCTTACGGAAAGCAGTGCAACATGTTGTTAATGGAAAGAAATCTCTTAGAGATGCAGAAAAGCAGTATGGTGTTCCAAGAAACACCATATCAAACCATATAAAAGCTAGGAAAAAAAATGAAATTGTAAGACCCATCGGTGGACAACTGGTATTTAATAAATATGAAGAGGATATCCTAGCAAAATCTATTTTGTTGTGCGCTGAGTGGGGCTTCCCACTTCATGCCAATGATTTGAAAGATGTTGTTCAAAATTATTTATTTACCAAAGGTGATGTTGTAAAACGTTTTAAAGACAACAGACCCGGAGACGACTGGATACAGGCTTTCCTAAAACGTCAACCTTTACTGACTCAAAGACTGACTGAAAATATAAAGAGGAAGAGAGCTGAAGTAAATGAAGAGACTATCGTGAAATATTTTGATAATTTAGAAGTGAGTTTGACCGGCATTCCTCCCGAAAACATCATTAATTATGATGAAACCAATTTCACCGATGACCCTGGCAGCAAAAAGATCATTGTTAGGAGAGGATGCCGCCACCCAGAACGTGTGATGGACACTTCAAAAACGTCAACTAGTGTCATGATGGCAGTCACTGGAGACGGCAAGCTCTTACCTCCTTTTGTAGTGTACAAAGCTCAGTACTTGTACCCAACTTGGGTCGATGGAGGTTTGCCTGGATCCAGGTACGCTTGTGCTAAGTCAGGTTGGTTTGACATGAATATATTTGAAGAGTTTTTTGTGAAGCTGTGCTTACCAGAATTGAAAAACAAGCCAGGAAAGAAGGCTGTGATAGGAGATAACCTGGCCAGTCATTTGTCAGTAGAAGTGATTCGTCTCTGTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGCATGGAAAGAAAAACTAACAGAATACAAAAAAAGAAACAGAGGTGTTATTCCAAATGGGTTCAGATCATGTGGGATTGTGCCACTGAACAGAGAAGCAGTGTTACAAAAAATCCCCAGGAAAAGAAAGAGCATGGAATGTGTAGAATCTAACTGGTCTATGGCAATAGTTCAGAAGCTTGATGAGTCAAGATATCCTGTTAAAAAAAACGCTCCAAAACGTGGAAGTCGGATAAAAGTAGATGCAGGAAAGAGTGTCACTGTAGATGATTTCAATGAAGCTTGCAGTTCAGTTCTAAAAAAAAATAAGAATGGTTTAACCCTCAAATCAAATGACTCTGAAATTGACGAGTTTCCAGAAGAACTTTTATCAAAATCCACCCGTGCAACAACCAAGAAAAAACATCGAGGCTCTCTGTCGGTGAAACAGAAAAATAAAGCAATCACGAAAACTCAAGACACATTGTCAGTAAAAGAGAAAGACTTTGTTGTGATCAAGTTTGTAATTAAAGAGAATCGAAGGAAAATATTCTATGCTGGTGAGGTGTGCAATATTTTAGAAAACGATAAGCTTGAAGTAATGTTTCTTAGAAAAACAGATGGAAAGAAAAATATATTTTTTGTATTTCCAAACGTACCTGATGTTAAAACTGTTGATATATGTGATGTTAACTGTATACTTAAAGTAAAAGAAAATAAAAGAGGAAGGCTTGTCTTTTATGATGATCCTAATTTTAATTTAGACCAACTGTACTAA
- Protein Sequence
- MVRNYKKVIGKRQKCNYSTESLRKAVQHVVNGKKSLRDAEKQYGVPRNTISNHIKARKKNEIVRPIGGQLVFNKYEEDILAKSILLCAEWGFPLHANDLKDVVQNYLFTKGDVVKRFKDNRPGDDWIQAFLKRQPLLTQRLTENIKRKRAEVNEETIVKYFDNLEVSLTGIPPENIINYDETNFTDDPGSKKIIVRRGCRHPERVMDTSKTSTSVMMAVTGDGKLLPPFVVYKAQYLYPTWVDGGLPGSRYACAKSGWFDMNIFEEFFVKLCLPELKNKPGKKAVIGDNLASHLSVEVIRLCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAWKEKLTEYKKRNRGVIPNGFRSCGIVPLNREAVLQKIPRKRKSMECVESNWSMAIVQKLDESRYPVKKNAPKRGSRIKVDAGKSVTVDDFNEACSSVLKKNKNGLTLKSNDSEIDEFPEELLSKSTRATTKKKHRGSLSVKQKNKAITKTQDTLSVKEKDFVVIKFVIKENRRKIFYAGEVCNILENDKLEVMFLRKTDGKKNIFFVFPNVPDVKTVDICDVNCILKVKENKRGRLVFYDDPNFNLDQLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -