Pgra008743.1
Basic Information
- Insect
- Pseudomyrmex gracilis
- Gene Symbol
- nfxl1
- Assembly
- GCA_002006095.1
- Location
- NW:139455-143083[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.1 6e+03 -3.3 1.1 15 19 126 130 125 130 0.81 2 18 0.15 8.1e+02 -0.5 0.8 4 10 161 167 160 167 0.95 3 18 5.8e-08 0.00031 20.0 15.1 1 18 175 191 175 192 0.98 4 18 2.2e-07 0.0012 18.1 13.7 1 18 229 245 229 246 0.93 5 18 1.6 8.5e+03 -3.8 1.7 6 10 271 275 271 275 0.93 6 18 0.01 56 3.2 11.2 1 19 281 300 281 300 0.90 7 18 5.8e-06 0.031 13.6 9.5 1 18 336 353 336 354 0.97 8 18 0.0086 46 3.5 7.6 1 12 388 399 388 399 0.94 9 18 0.91 4.9e+03 -3.0 1.1 6 10 409 413 408 413 0.89 10 18 7.8e-07 0.0042 16.4 14.2 1 18 419 436 419 437 0.91 11 18 1.7 9.4e+03 -3.9 1.3 6 10 465 469 464 469 0.76 12 18 0.00011 0.59 9.5 9.8 9 19 484 494 482 494 0.90 13 18 0.00067 3.6 7.0 8.1 1 12 504 514 504 514 0.95 14 18 0.89 4.8e+03 -3.0 5.8 14 18 550 554 550 555 0.89 15 18 0.0023 12 5.3 7.9 1 12 591 602 581 602 0.88 16 18 2 1.1e+04 -5.3 3.3 15 18 617 620 616 624 0.50 17 18 8.4e-05 0.45 9.9 16.6 3 18 633 648 632 649 0.91 18 18 0.00025 1.4 8.3 13.8 1 18 694 713 694 714 0.85
Sequence Information
- Coding Sequence
- ATgcagaaatttaaaatagcCCAGGCGCAAAACAAGCTGTCTATTGAGAGACACTTGGAAGCTATTGCGTTATTGAATTCGTCCAGCGAGGACGAGGACGAGACAAATGAGGAAGACGCGCAACATTTGGTGGATAAAGTAATATCCGCTTATCAAGGGCAAAGAACGGATGCGGAGAAAGTGATATCGTATTTGATTAATTCTCTTCAATCCAGCAGCGCTGTCTGCCTGATATGCATATCAACTGTCAAAAAGACAGATCCgATATGGAACTGCTGCAAGTGTTACGCATTTATGCACATGTCCTGTATCTCACATTGGATCAATGACAGTTTGAGATACAAACGGGATAAAGGAATCACACCAATTTGGGCAtgTCCAAAGTGTCGTACGGAATATGAGCAAAACCAGGTTCCGAGATCGTACGAATGTTTCTGTAAAAAGATCGTTGATCCTACGTATCAACCGTGGAGCATTCCGCATTCTTGCGGCGAAACGTGCGGCAAGCTCCTGCAACCGGAATGCGGTCACAAATGCGTCCTGCTTTGTCACCCCGGTCCGTGTCCGCCTTGCGCAAAAACGGTTAGTATTAAATGCTACTGCGGCAAGCAGCCGGCGCAGCTACGTCGATGCAACGCCAAAAATTGGAGCTGCAAAACTATATGCAAGAAAAAATATGAGCATTGTTCGCACTCTTGTAGTAGTTTGTGTCACTCCGGAAAATGTCCTCCCTGTGAAGaagtattattattgaaatgCCGTTGCAAGAGCAACGAGAAAGAAGGTAGATGTTCCGAGAGCACGTGGATTTGCGAGAAACCTTGTAACAGAAAATTCTCCTGCAATGTGCACGTTTGCGAGAGCACTTGTCATTCACCCGACGATTGTGGCAATTGTCCTTTGGAGAAAAATCGAACTTGTCCATGCGGAAAGAAACGATACGAGGTTTCGTGCGAGCAGCAGCAGGTGCCGACGTGCGGCGATACCTGCGGCAAGCTGTTGGACTGCGGATCGCACTACTGCAGCATGAGGTGTCACACCGATCGTTGCGGTCCGTGTTTAGAAGTGGTGACCAAGTCCTGCAGATGCGGCAGTTATACGAAGGAACTGGCCTGTGTGAAGGAATATCACTGCAACAAAAAGTGCACGCAGATGCGCCAGTGCGGCAAGCACTTGTGCAACAGGAAATGTTGCGACTGCGTATTGAAGAATACGCTCAATCCCTGCGAGAGAACGTGCGAAAATACGCTCAAATGTCGTAAGCACAAATGCGGCGCTCCCTGTCACAGTGGCCCGTGTTATCCGTGCAACAGAACGGATGTCATACAGTGTCGATGCGGCAGTAACAAAATAACGGTGCCGTGCGGATCCAAGAGGAGAAAATCGCTACCGTGTAACAAACCCTGTAAAATTCCACCCATCTGCCACCACAGCAAGCAGGAAACGCACAAGTGTCATCAAGGTCCGTGCCCACCTTGCAAGAAGATTTGCGGCATCACGTACAAGAGATGCGGCCACTCGTGCCAGGCCACTTGTCACACCAAGGTCTACGTGAAGGTCAAAACACAACCGTCGGTCGGTTATCCTTGGGATAACAAACACGAAAGGATAACATCAAGGGACGGTATAAAGCAACTGAAAACCTTACCGTGTCCACCGTGCGAGGTTTCCGTGCCCGTGACTTGTCTCGGAGGTCACGAGACGCGTCTTTGGCCGTGTTACATGTCGAAACCGAGTTCTTGCGGCAGAAGCTGCGACCAATTACTGTCGTGCAAGAATCACACCTGTGAATTGATCTGCCACAAGATACGGAACAGCGAGAGTAAATCTGACGACAATGGTATTCCGTGCATGGAATGCGAAAAGTCGTGTCAGTTCGCGCGTCCGCAGGGTTGCACACATCCGTGTCTACAACCTTGCCATCCGGGATCGTGCGAACCGTGCAACCAGTTGGTGCGAGTCTCGTGCCATTGCGGTATCAGCACTCTTTACCGGCATTGCGTGGACCTGACGTCCGCGACAAACGAGAAACGAGACGAGTTACTCAAATGTGGAAATCAATGTCctaaaaattACTCTTGCGGCCATCGCTGCGTCAACGATTGTCACTCGGGACCATGTAAAGGCGGAGAAGAATGTAGCAAGAAAATCAGATTATGGTGCAAATGTAAACGGAtaaaaaaagactttttttgCTCATTGCTACAGAAAGAACAGATCACTGTGGAATGTGACAATATATGCGAGTCACTGATgaatgagagaaaagaagcTGAGGAAGCTAGGATGGCGAAGAAGCGTGAAGTGGAAGAGCTGCGTAATCGAAAGGAGATTGAGAAATTTCAGAAGAAATTCAAGCCAAGACGAAAGAGGAAAGACAAGTACGAGAAGTCGGAGCAGTTGCGAGAAAACGTGGGAACGAGAGCTTGGAAACTTTTCAAAGGCTTCTTTTTTAattggaatattttattaatcattGTAAACTTTGTACTCGTGGTAGCATgcgtaatatgtatattagcAATAGTTGCAATGTGGAATAACGCAGCCGAATCtaatttgcaaattattgACATACAATGA
- Protein Sequence
- MQKFKIAQAQNKLSIERHLEAIALLNSSSEDEDETNEEDAQHLVDKVISAYQGQRTDAEKVISYLINSLQSSSAVCLICISTVKKTDPIWNCCKCYAFMHMSCISHWINDSLRYKRDKGITPIWACPKCRTEYEQNQVPRSYECFCKKIVDPTYQPWSIPHSCGETCGKLLQPECGHKCVLLCHPGPCPPCAKTVSIKCYCGKQPAQLRRCNAKNWSCKTICKKKYEHCSHSCSSLCHSGKCPPCEEVLLLKCRCKSNEKEGRCSESTWICEKPCNRKFSCNVHVCESTCHSPDDCGNCPLEKNRTCPCGKKRYEVSCEQQQVPTCGDTCGKLLDCGSHYCSMRCHTDRCGPCLEVVTKSCRCGSYTKELACVKEYHCNKKCTQMRQCGKHLCNRKCCDCVLKNTLNPCERTCENTLKCRKHKCGAPCHSGPCYPCNRTDVIQCRCGSNKITVPCGSKRRKSLPCNKPCKIPPICHHSKQETHKCHQGPCPPCKKICGITYKRCGHSCQATCHTKVYVKVKTQPSVGYPWDNKHERITSRDGIKQLKTLPCPPCEVSVPVTCLGGHETRLWPCYMSKPSSCGRSCDQLLSCKNHTCELICHKIRNSESKSDDNGIPCMECEKSCQFARPQGCTHPCLQPCHPGSCEPCNQLVRVSCHCGISTLYRHCVDLTSATNEKRDELLKCGNQCPKNYSCGHRCVNDCHSGPCKGGEECSKKIRLWCKCKRIKKDFFCSLLQKEQITVECDNICESLMNERKEAEEARMAKKREVEELRNRKEIEKFQKKFKPRRKRKDKYEKSEQLRENVGTRAWKLFKGFFFNWNILLIIVNFVLVVACVICILAIVAMWNNAAESNLQIIDIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268678;
- 90% Identity
- iTF_01269484;
- 80% Identity
- -