Pgra001159.1
Basic Information
- Insect
- Pseudomyrmex gracilis
- Gene Symbol
- -
- Assembly
- GCA_002006095.1
- Location
- NW:654121-679879[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.2 3.1e+02 1.5 0.2 3 22 328 347 328 350 0.86 2 15 1.8 1.1e+02 2.9 3.4 2 22 499 519 498 522 0.89 3 15 0.011 0.65 9.9 0.9 2 22 544 564 543 567 0.90 4 15 9.1e-06 0.00054 19.6 0.6 2 23 581 603 580 603 0.94 5 15 0.0087 0.52 10.2 0.9 1 23 623 647 623 647 0.92 6 15 1.6 97 3.0 0.1 1 21 695 715 695 716 0.82 7 15 0.019 1.1 9.2 1.7 2 23 738 759 737 759 0.95 8 15 0.45 27 4.8 0.8 1 23 779 800 779 800 0.91 9 15 0.0046 0.27 11.1 0.3 1 21 806 826 806 827 0.95 10 15 3.3e-05 0.002 17.8 2.9 1 23 845 867 845 867 0.97 11 15 0.0008 0.047 13.5 0.1 1 23 872 897 872 897 0.95 12 15 0.2 12 5.9 3.3 1 23 905 928 905 928 0.95 13 15 0.034 2 8.3 5.0 1 23 934 959 934 959 0.96 14 15 0.0054 0.32 10.8 1.5 1 20 965 984 965 985 0.96 15 15 0.44 26 4.9 1.8 1 13 996 1008 996 1025 0.90
Sequence Information
- Coding Sequence
- ATGGAAGACTACGAAGATGACGATGACACGCACTATTGTATCAAATGCAGTATGACAATACACGGCCTCGACAATTACGTGCGGCATCGGCGCTCGGGCTGTCGACCGCCTGACGATAAAAAAGAGACCTTTCACGAGTCACCTTCAACGCCGACAACAGTGTCCTATCCCGAAATCTTAAACGCAGACGCTTTCTTCAGTTCGCTAGAATTAAAGAGTAGCGCGAAATCGAATAATCGACGTGACGCCGAAGAATCTGCTTTGACATTGTTGgaaaaatttaagaaagatgatagagaaaaaaaagacgaaaagaAAAGTCAGATGGATTCCGACGAATCCAGCGTGAAGGATAAACTTCACAGCATGCTGCCCGCTGTCAGCGACTTGGATGATCCAACTGATCAATTATGCATCCAATCTCTCAAGCAGACCGATcgaaaaagacaagaaaatgTTCAACGAATGGAGTCCGATCAGCAGAACTGGTTGGAAGACACAAGTGTCATTCTCGAAGACCTGAATCTGAATAGCGAGAACAAAGAGATACCGAAATTCGGGTTTAGGTTTCAACAGGGCAGCGTCGGGGAAGactccgacgacgacgaggaagaTTTGGAGGACGACGATTTAGAAGAAGACGATTCTTATTCGGATTCTGACGACGGTGAAAATCGGGAGCGTCCGCCGCGAGGCCATACCGGCGGTAAGTGGAAGCCCGAGCTCGACGATTTGCCGCAGGACATGGCACATATGCATGAGGACGACGTGGATCTCGAGGATGATCATCAAGAACATCCTCCACCGACGTACACCGGCGGCAAATGGAAACCTGCGGAGACATCGcaaACAAAAAGATATCGACCATTACAGAAGGATGAGGAATATGAGAGCAAGGACACGTCCGGACAGCCGCCGCCGGAGCACACGCGAGGGAAATGGGTGCCGGGTGCGCGAACGGATATCGAATCGGGATATTGGTGTAATCCTTGCGGTAGGAAGCTTGCCTCACGAGTGGTCTACAATCGGCATCTGCTCTCCGATCTACACGCCAGAAGGAGTATAAGAGAGATTGACAGAGATATCATTCCATTGagtgaaataaatttgcgtAGTAGAAGACTGGCTGCCCGACAGACAGCAGTAAAGAAAATACCGGAAGAGCCAGAGataaagaaaggaaaaaaaagaaaaagaaaatatgacGTGAGCCAGAGAATATTGTACATCAATTGTGAGATGTGCCACGCGCGCGTGAGGAAGCTCCAAGTTGGTAAACATTTGCTCTCCCATTACCATTGCCGTGTGGCGGGAGTAAATCCACGCAATCGAAGGGAGCGCCGTTTCCTGCTGGAAAACATGGCGTACGTGGTTCGACAGTGTCCTTTTCAATGCGCGTCTTGTCGTTTTTATTGTAACACTGAGGAAACATTCCTGCTCCATTGGCGTTCCAATCTTCATATTGAGACCATAAAAATGaatGAAAGTGATTTGCGATGTGTTTCTTGCAATTTTTGCTGCAAAAACAATAACGCAATGGAGTCTCATCTTTTGAGTACGGCTCATCGTGACGTAGTATCGATGATGAACGGTTCTGTGCCGGTAGTAATTGGTCGTCACCTAGTGTTGTCTTGCACCACTTGCGACCGTCAATTTCAATACAACTTGCAGCTGCGATTGCACATCAAGCAAACTGGTCACGAGAGCCACACTGCTTCGGATGCAtatcagcaatatcttaaatGCAATTGGTGTTCTAAAGCTTTTCGGTCTCAGTTCGCGCTTCAACGTCATCAGTTGCTCGCGCACAAAACCAAACACGATGACGCGGATGTAAATAAGAGCGAAACCACTCAACTGGCACTGTACTACTGCTCATATTGCTCAATAAACTTCGCTACTAGAAATGAGGCGAATGAACACCGAAGATCATTTATTCACAAAGAAGTCGTTAGAGCACACAAGAATAAGAATGGACAGTCAGGAAAAGAAATGGAGAGAGTGTGTCCTCATTGCGACGAAAAACAACCTAACATCATAGAACATAAAACTCATCTACTCGATCATCATCCGGAACTATGCCACAGATGTCCTCAATGCAACATGCTTTTTGCCTTGTCACAAGACGTCAGCGGACACACACGTGAGGGCAAGTGTGTGAAAAAAGACGAGTTAAACATGGTTGAAATGatacgcgagagaaaagaatggaAGTGTCACATTTGTGTCTACTCGACGAATTCACAATCTGATTTTATGTATCACAAGATTCTCCATAACGGACCTGTTATAACTACGAACGGAATAGCCAAATTAAAGACAAATTGTGTGAAATATTGCTGTCTGATATGCAACAAACTCGTTTCGAGAGCTTCACTGGCAAATCACATCACGCAACATACTGGAGAAAAACCGTTTTCTTGTAAGAAGTGTTCGGTCTCGTTCGCGAAAAGATCGGACATCATCATTCATCAGAAACTGTGCAAATCCTCGGAATCATCGAAGCTGGATAAAACTGGCCGTGCGCGAACTTTCATTTGCGGAGAATGCGGAGAAGCTTTTTACACTAAACACTGCCTTCGACAGCACATCCTGCGACACGCCGGTAAGAAATTCAAGTGTGGACAACCGGGGTGCCCTACCGTCCTACGCACGAAAAACGAATTGAACAAACACCAAATGCTGGTCCACGACACCATAAAAAAGGAAATACACAATTGTACCGAGTGCCTGTACTTCGCTAAGACGAGGCAGGATTTAACCAGACACAAATTGAGAATGCACACTCAGAAGCAAACCTTCAGCTGTACTTATGATGAGCATTGCTCTTATAAGGGAAAAAGTGAGAGCCACGTGAAGCGACACTTGCGGACGCACGAGGTTCAGAAAAAATACAAGTGTCGATTTTGTGACTACGCTTGTAACATTTCGgAAAATCTCCGGAAgcatatattatgtacaaatTTGCATCCAGGTATGACGGTATACGAATGTAATCTTTGTGACAAAAGAACGACGAATCCGttcgaaacaaattttgccAAGGAACTCTGCGCTCATTTGTTGAAAGCACACTCGGAGATGTTTCAATCGCCATTTGAAGCGAATCGTTACGTCTACCATTATCAACAATGTTCATAA
- Protein Sequence
- MEDYEDDDDTHYCIKCSMTIHGLDNYVRHRRSGCRPPDDKKETFHESPSTPTTVSYPEILNADAFFSSLELKSSAKSNNRRDAEESALTLLEKFKKDDREKKDEKKSQMDSDESSVKDKLHSMLPAVSDLDDPTDQLCIQSLKQTDRKRQENVQRMESDQQNWLEDTSVILEDLNLNSENKEIPKFGFRFQQGSVGEDSDDDEEDLEDDDLEEDDSYSDSDDGENRERPPRGHTGGKWKPELDDLPQDMAHMHEDDVDLEDDHQEHPPPTYTGGKWKPAETSQTKRYRPLQKDEEYESKDTSGQPPPEHTRGKWVPGARTDIESGYWCNPCGRKLASRVVYNRHLLSDLHARRSIREIDRDIIPLSEINLRSRRLAARQTAVKKIPEEPEIKKGKKRKRKYDVSQRILYINCEMCHARVRKLQVGKHLLSHYHCRVAGVNPRNRRERRFLLENMAYVVRQCPFQCASCRFYCNTEETFLLHWRSNLHIETIKMNESDLRCVSCNFCCKNNNAMESHLLSTAHRDVVSMMNGSVPVVIGRHLVLSCTTCDRQFQYNLQLRLHIKQTGHESHTASDAYQQYLKCNWCSKAFRSQFALQRHQLLAHKTKHDDADVNKSETTQLALYYCSYCSINFATRNEANEHRRSFIHKEVVRAHKNKNGQSGKEMERVCPHCDEKQPNIIEHKTHLLDHHPELCHRCPQCNMLFALSQDVSGHTREGKCVKKDELNMVEMIRERKEWKCHICVYSTNSQSDFMYHKILHNGPVITTNGIAKLKTNCVKYCCLICNKLVSRASLANHITQHTGEKPFSCKKCSVSFAKRSDIIIHQKLCKSSESSKLDKTGRARTFICGECGEAFYTKHCLRQHILRHAGKKFKCGQPGCPTVLRTKNELNKHQMLVHDTIKKEIHNCTECLYFAKTRQDLTRHKLRMHTQKQTFSCTYDEHCSYKGKSESHVKRHLRTHEVQKKYKCRFCDYACNISENLRKHILCTNLHPGMTVYECNLCDKRTTNPFETNFAKELCAHLLKAHSEMFQSPFEANRYVYHYQQCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -