Basic Information

Insect: Pseudomyrmex gracilis
Gene Symbol: -
Assembly: GCA_002006095.1
Location: NW:210204-224296[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.35 21 5.1 0.2 2 19 175 192 174 195 0.88

2 18 0.18 11 6.1 0.6 1 22 200 221 200 221 0.93

3 18 0.023 1.3 8.9 3.7 3 23 237 258 236 258 0.93

4 18 0.0015 0.09 12.6 7.0 1 23 577 600 577 600 0.98

5 18 0.54 32 4.6 0.2 5 20 607 622 605 623 0.92

6 18 0.00093 0.055 13.3 1.2 2 23 632 653 631 653 0.97

7 18 0.00074 0.044 13.6 1.6 1 21 680 700 680 701 0.96

8 18 2.5e-06 0.00015 21.4 0.3 1 22 844 865 844 865 0.96

9 18 0.00054 0.032 14.0 0.0 2 23 872 894 871 894 0.90

10 18 1.2 71 3.5 3.2 1 23 904 927 904 927 0.90

11 18 0.12 7.3 6.6 0.1 2 21 953 972 953 973 0.92

12 18 1 62 3.7 5.3 1 23 980 1003 980 1003 0.95

13 18 0.03 1.8 8.5 6.5 1 23 1014 1037 1014 1037 0.95

14 18 0.11 6.4 6.8 0.0 1 20 1084 1103 1084 1105 0.94

15 18 0.0082 0.49 10.3 4.3 1 23 1112 1135 1112 1135 0.96

16 18 0.54 32 4.5 0.1 1 23 1184 1207 1184 1207 0.91

17 18 0.086 5.1 7.1 0.2 1 23 1436 1459 1436 1459 0.94

18 18 0.021 1.2 9.0 0.2 2 23 1494 1516 1493 1516 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.35	21	5.1	0.2	2	19	175	192	174	195	0.88
2	18	0.18	11	6.1	0.6	1	22	200	221	200	221	0.93
3	18	0.023	1.3	8.9	3.7	3	23	237	258	236	258	0.93
4	18	0.0015	0.09	12.6	7.0	1	23	577	600	577	600	0.98
5	18	0.54	32	4.6	0.2	5	20	607	622	605	623	0.92
6	18	0.00093	0.055	13.3	1.2	2	23	632	653	631	653	0.97
7	18	0.00074	0.044	13.6	1.6	1	21	680	700	680	701	0.96
8	18	2.5e-06	0.00015	21.4	0.3	1	22	844	865	844	865	0.96
9	18	0.00054	0.032	14.0	0.0	2	23	872	894	871	894	0.90
10	18	1.2	71	3.5	3.2	1	23	904	927	904	927	0.90
11	18	0.12	7.3	6.6	0.1	2	21	953	972	953	973	0.92
12	18	1	62	3.7	5.3	1	23	980	1003	980	1003	0.95
13	18	0.03	1.8	8.5	6.5	1	23	1014	1037	1014	1037	0.95
14	18	0.11	6.4	6.8	0.0	1	20	1084	1103	1084	1105	0.94
15	18	0.0082	0.49	10.3	4.3	1	23	1112	1135	1112	1135	0.96
16	18	0.54	32	4.5	0.1	1	23	1184	1207	1184	1207	0.91
17	18	0.086	5.1	7.1	0.2	1	23	1436	1459	1436	1459	0.94
18	18	0.021	1.2	9.0	0.2	2	23	1494	1516	1493	1516	0.95

Sequence Information

Coding Sequence: ATGGCCAGAGTAGCAACATATCAACGAAATGTGAATGTTGTACTTACTGATATATTTACAGGACCAACAaataatATAGAGAATCAAAATGGTATCAAGATTAAGGAAGAACCTGTCGATACAACAGTAAACACTTTCACGACCGAAGATTGTACATTAGAAAACAATAATGATTTAATAGAGCAAAACAAATCTTTACAAACGGGCGATTCATATGaagttataaataacaaagaaactGAACACTTATCTGAtagcaattttgtatatttaaataataaaaaagaatgtcGTAATTTAAAGCGTAAACGTACAAAAGATGCAGAGAAACAGACATATAATACTTTATCCCCGTCTACAAAACGACGTAAATGTTCGAATAAAGTTTCTAAAGATACTACTTCATCTTGCACTACATTAATCGagaattttaagaaaatgagaaaaaaacgaactaAAATCGGAATGAATATGAAAGTCAAAATACATCGTAAAACTAAACCAGAGAACAAAGGTTCTGTACAATGTGATGTATGTTTTAGAGACTTCGATAATCAGATGAATTTAGAATTTCATGTAAAGTATTATAAAGGAgtttttatatgcaaaaattgtaACTCGTATTATGaaacacaaagtaaattaGTCATACATAGTAAGACCTGTAATCTTAACCCAACTTGCAATATGCAGCGATGGAACCTATTATGTAACTTTTGCAATCGTAAATTTAAAGTGAAATATGGGTTACAGTCTCATTTGTTTCATTCACATGGAGAATTAATATATTCAGATAATACAGATATTTGCAAACCTGCATCCGAAAATCTTGTAAATACATATTGCCAAAATGATACCTTGAAGATTAACGCACATGAAGAATCATCATCGACTAATCTTGTTGAATCCAAAAACCTAAATAAATCTTTCAAAAATGACACAATGAAAACTACAAACTCAAACAGTGAAGAATCGTTATCTACTGCTGAAATGTTGAGTTCGAAAAAATTGCGACAACCAACACTAATGGAATACTTGGAGCTCTACAAAAGAAACTACAATACTAAAAATTACCAACGTGATTTGGATGACACAAAGAATGACTTATCTATGAGTGCTACCAATACAAAAGATGATAACTCTCTGTCTACAAAATCAAATCTTAAAAAACCAACAACAAATTTTACTCTAAAACAAGATACAAATCGTGAACCAGGTGTTGAACAGCCTCTTGTAACACTACACGCAAATGTTGAAACGATGATATCTTGTTTCAAAAAAGATCCTAATGTGATTgccaaaaaagaaattattagtAATCATGTAGATGACACAATCTTATATGATCGAAATGAAATACCCTATAGCTTAAGATCTTTTCAGAGTAGTTCTAGCACGAGATCGAATtcaaaaaaaacgagaactAGAAATTCAtctaaaaaatggaaaactaTTATGACTCGTTTTAAGTGTAAGAATTGTACAGTGCTTTTGACACGATGTGACAAAAAACCGAATAATGATGATCAGATTCCTATAGTGGAAACCACTAAAGAAGATGTTTCTCTGAACACCCAAAGCAACTCGTGTTTATTTCAAGAAACTGATATACAAGCAGAAGTAGTGTTTAAAACATTAGAAGTTTCTCTTGAACGCATAAAACCTGTTCCAGCTCTAGATCTAAAAGCGAGGACAGTGTCAGATGTGGAATATCTCGATGACAAATGTTATACATGCAGTGTTTGTAAGAAGAGTTTTTCTTCAAAAGAGAATAAACATATGCATATTAAATCTTGTCACATAGCGTACATGTCAAGTATATGCAATGCTCGATACACATCGAAACATAGCTTACTTCAACATTATTTATGCGAACATTTACTTGAACAAACTCAATGTTGCGTTTGCTATACGTCATTTTCCGATTATGAAGCTTTGAAGGAACACTTAAATATACACTGTCTGAAGTATATTTACAAAGAGACTGACAAATACGCAGTAGATGTTGAGACAAAATGTAAttcaaataatgaaaattatgAGTGCTGttattgtaacaatatattctcGTCACAATCAACTCTGATGATACATCAAAACCAATGCACAACACAAAAACAAGTGGAAAATGAGAAAAGTATGGTGcaagaaatagaaaatgagaaaagtaCTGTACAAGAACTAAATAAGGAGATTGTAAATATCATCTCTGAAGAGGAACACAACAACAACGCCGATGGAACTACATTACCTGACAAAGAGATCATTTCTAATGACTTATGTGAAGTTAGTAACAATTCTAAAGAGATATCAATTATGCGTCGAATATCAGAATcagaaaaagaagtaaattttGAAGATGATAACCAACCTTCTTTTCTTGGTAATCTGTTATCTTCAATACAATCTGTAATTGTGGATGGAAGTGAAACTATCACAGAAAATTCTGAACGGAGCTTAGACGATTCCCTACTTAACAAGgatgttttaaatatagagCGAGAGCTTACTGAAATAAATACCAATATTTATCCGTGTAGTATATGTGGAAAGCAATTTCAAAGTTCGAAAAACTTGCAACAACACATACGCTCTTTTAGCAATACCACCGATGTTTGTCCATTATGTGAGACTGCGTTTAGTTCTAAACGTCTTCTACAATCACATATTGTTGCAGCACATGTACCACAAATCtcaaaaacttacaattttcATTGTATGTTTTGTAATCAaggttttgttaaaaaatatgaactTCGACCTCATGTATTACATCTGCACGGTCAGCAAATGTTTCGTACTTTTATGCGCGATTCTCACAACAATCCAGATAACCTTGACGGATTGTGTACCGGAGTATGtgacatatgtaatataaagtTTGAGACGCGTGATCGTTACGCAGAACATagaatgtattattataaaaatcataaGTTTACATGCTCGATCTGCAGAAAAGACTTTCAAGGTATGTATATGTTTCATCATCATTACAAACTTGCACATTACTCAGAAAATAAACGTAACTCCTATAAGTATATTTGTGACATATGCAACGAGGGATTTAATCATGAGTCACATTTTCATTCCCATAAAATGCATGTTCATGTAAATAAGGAAACTTCGATTGCAATAGCAAAGAAATCCGAAAATAGGAAGCTAATTGATCATGCATTTGAAGTTCAGAAGATCTGGAATACTATGGAACAACGAAAAGGAAGTAACCATTTATCTACTACTGATGAGTACGTATGTACGATCTGCGAGATAAAGTATACGAATATTGATGATATATTAAATCACATCGTAGTATATTCCACTTCTGGTAATTTTAAATGTGATAAATGTGACAGACAATGTAAGACACGTGATGTGCTCGagcaacataaaaaattaactcaCATTTGTCGCGATGTTTATAACGGATATTTATGCCATATTTGTGGTGAAATTCTGGAAACAATTACATCATTACAATGTCATGAGAAACATTTCCATTCAAATGCAAAGAGTATTGAGAATCAATCAAATActaataacaacaaatatagGTGTTTATTCTGTGGTTTAACGTTCTTGTCTGCTGATATTGttcaaaaacatattaatgTGGATCATAATGATATACTAGCTAAACACTTTACCTTAAGGCCTGTACAGTTCACTAGTGACAATAACGTGATACAAAAGAAGTCTGTTCAGCAATTGGTTCAAGTTAATCAAACATTATCTGGAAATAATCCCTCAACTCAATCTTTAACAAAACGATCTAATAATATTGCACTTGATATGACTATACAGAATAGCAATAACACAACAATTACGAAATCATATTACAAACACCAAGTAAAACatgtatttgaaaataattataaagagAAATTAACACAAGAAAAACCAACTTCTGCAATCGTATCATCATCTGAGAATCATGCAATCGTATCATCATCTGAGAATCATGCAATCGTATCATCGTCTGAAGTCAATATTTCATCAACATCTGCTACTTCAACAGCTACTACATCAAGTAATGAGTCCAAAGTTGCTACATCAGTTCCTTCATCGATCGAATTATTTAATGAGCCTCAATCACGCcctagtatttttttaaattcgtcAAAGAATGACTGTAAAATCAATTCAATTTCATTAACAAATAACTCTGCTAATCCAGTAATAACAGTTCCTGTAACTTCAGCAACTGGAGTACTTAAGATTATACTCGCCAACAAACAAGACAAGAAAATCAAATCTGTAAAACAAGCTATCGAATCAGCAAGCCTTCTAGCAAATAGCTGTAATTATGTATGTCCTGTATGTTCGTTAGTCTATCCATCTTTAATGTTTTTCCACGCTCATTTGATATACGCACATGCAAGTTATATTCGTAATGATACATGTAGATTACAGTCAACTCAGACCTCAAGTGGTCAGCTAATCTCTGTTGATAAGTCAATTCCGGCGTTCTCTGCAATAGAATGTTTGTTATGTCCAGCCATATTTACTAACGAAACCTCTTATAagatacatttaaaaaattttcatactCGTCGTGTGATTGCTCTTAACGAGAcgataaatagtaataatgcaaataatGCCTCAATAGTAACaacaaaccaaaacaaaaaagatacgaATCCCGAAATTATCACTAtagatgatgatgataataatattgagACTTCTATAAAAGATCCTGCAGACAAAACAACCGCTACGACAGATATAATTGATGAAAGCCTGAGTGAGAACATTGGTAAATTGCGGGTAAAGCCTTTCGCAAAGATTATTGAAAATCCATTGTCCGCAGAAACTCTTAAATAA
Protein Sequence: MARVATYQRNVNVVLTDIFTGPTNNIENQNGIKIKEEPVDTTVNTFTTEDCTLENNNDLIEQNKSLQTGDSYEVINNKETEHLSDSNFVYLNNKKECRNLKRKRTKDAEKQTYNTLSPSTKRRKCSNKVSKDTTSSCTTLIENFKKMRKKRTKIGMNMKVKIHRKTKPENKGSVQCDVCFRDFDNQMNLEFHVKYYKGVFICKNCNSYYETQSKLVIHSKTCNLNPTCNMQRWNLLCNFCNRKFKVKYGLQSHLFHSHGELIYSDNTDICKPASENLVNTYCQNDTLKINAHEESSSTNLVESKNLNKSFKNDTMKTTNSNSEESLSTAEMLSSKKLRQPTLMEYLELYKRNYNTKNYQRDLDDTKNDLSMSATNTKDDNSLSTKSNLKKPTTNFTLKQDTNREPGVEQPLVTLHANVETMISCFKKDPNVIAKKEIISNHVDDTILYDRNEIPYSLRSFQSSSSTRSNSKKTRTRNSSKKWKTIMTRFKCKNCTVLLTRCDKKPNNDDQIPIVETTKEDVSLNTQSNSCLFQETDIQAEVVFKTLEVSLERIKPVPALDLKARTVSDVEYLDDKCYTCSVCKKSFSSKENKHMHIKSCHIAYMSSICNARYTSKHSLLQHYLCEHLLEQTQCCVCYTSFSDYEALKEHLNIHCLKYIYKETDKYAVDVETKCNSNNENYECCYCNNIFSSQSTLMIHQNQCTTQKQVENEKSMVQEIENEKSTVQELNKEIVNIISEEEHNNNADGTTLPDKEIISNDLCEVSNNSKEISIMRRISESEKEVNFEDDNQPSFLGNLLSSIQSVIVDGSETITENSERSLDDSLLNKDVLNIERELTEINTNIYPCSICGKQFQSSKNLQQHIRSFSNTTDVCPLCETAFSSKRLLQSHIVAAHVPQISKTYNFHCMFCNQGFVKKYELRPHVLHLHGQQMFRTFMRDSHNNPDNLDGLCTGVCDICNIKFETRDRYAEHRMYYYKNHKFTCSICRKDFQGMYMFHHHYKLAHYSENKRNSYKYICDICNEGFNHESHFHSHKMHVHVNKETSIAIAKKSENRKLIDHAFEVQKIWNTMEQRKGSNHLSTTDEYVCTICEIKYTNIDDILNHIVVYSTSGNFKCDKCDRQCKTRDVLEQHKKLTHICRDVYNGYLCHICGEILETITSLQCHEKHFHSNAKSIENQSNTNNNKYRCLFCGLTFLSADIVQKHINVDHNDILAKHFTLRPVQFTSDNNVIQKKSVQQLVQVNQTLSGNNPSTQSLTKRSNNIALDMTIQNSNNTTITKSYYKHQVKHVFENNYKEKLTQEKPTSAIVSSSENHAIVSSSENHAIVSSSEVNISSTSATSTATTSSNESKVATSVPSSIELFNEPQSRPSIFLNSSKNDCKINSISLTNNSANPVITVPVTSATGVLKIILANKQDKKIKSVKQAIESASLLANSCNYVCPVCSLVYPSLMFFHAHLIYAHASYIRNDTCRLQSTQTSSGQLISVDKSIPAFSAIECLLCPAIFTNETSYKIHLKNFHTRRVIALNETINSNNANNASIVTTNQNKKDTNPEIITIDDDDNNIETSIKDPADKTTATTDIIDESLSENIGKLRVKPFAKIIENPLSAETLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -