Pgra002110.1
Basic Information
- Insect
- Pseudomyrmex gracilis
- Gene Symbol
- -
- Assembly
- GCA_002006095.1
- Location
- NW:101539-107463[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.036 2.1 8.3 4.2 1 23 408 430 408 430 0.98 2 10 0.49 29 4.7 3.6 1 21 436 456 436 459 0.96 3 10 0.00016 0.0094 15.7 0.6 2 19 466 483 465 487 0.89 4 10 6e-06 0.00036 20.1 3.3 1 23 493 515 493 515 0.98 5 10 0.00072 0.043 13.6 0.3 3 23 523 544 521 544 0.92 6 10 0.13 7.8 6.5 1.8 1 23 551 574 551 574 0.98 7 10 4.3e-06 0.00026 20.6 0.7 1 23 578 600 578 600 0.97 8 10 0.00077 0.046 13.5 0.6 1 23 606 628 606 628 0.98 9 10 2.2e-06 0.00013 21.5 0.4 1 23 634 656 634 656 0.96 10 10 1.9e-07 1.1e-05 24.9 2.4 1 23 661 683 661 683 0.96
Sequence Information
- Coding Sequence
- ATGGACGTGCAAGAGGGGCAGTCGAAAATATGCAGACTCTGCGGCCAGTACGAGAGGATCTACATCGACGTGTTTGGCGAGGAGGGTGTCAAACGTTACCTGGGCCTCAAGATCCACACGAAAATCAACATCCTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAGTGTCTAGGCAAGCTCGAATTCGTTTGCGACTTTCAAGAGGAGTGTCTGCGCACCCAACAAAAGTTACGCAATCAGTACAAGCTACCGCCTTTAACAGAGTCCGCAGCGGTAAAAGATGAAGAGTCACCCTCGACGGTGGGCGCATCGTCATCGGATAACAACAAcagtatagaaaaaaatctcaattccTCCAGTAACAGTCAGGATGAAGAGGAGGATCAGAGTGAAAACATCAAAAGCATCGTCGAAAAAGACTCGGTGGAATCGccgaagaagaaaacaaagacTCAGCGAAGTCTTCGCAGTCAGCAGCAACATGCTTCCAAATGCAACGCGACTTccaatgtagaaaaaaatgtacaaaatcaCAGCGAATCGGAAACTTCGTTAACTCGCTGGCTGCGAAGTAAACAAAGCGCCGAGTCGTTGGCGTCTTCGGCGGCGAGCGAAGAGGAGACACCGATCGCGAACAGATTGAGGAGTCACAATAACGTAGAAACAAACGCCAACAACACTCATTCTGTGAATACTAGCAGTAATagcaataataacaatgaaaCTACGAACAAACAGAATTCGAAACAACATCCGATGGCGATTGAGTTGCCGACTACGGCGTTGAACAAGTTGGTAAAGATCATTTCCGACTCTCCCGACGTTGAGGTCTCCGTTAAGGAAACAACGAGAAGTCGAAACAACGACGCCGAGGACAACAGTTTCACCGTGGAGCTATGCAAGAAACAGAACGACGAGGTGTCGACGGTGCGCGCGCGGGTTTTTCCCAATCAGGGTTACTGCCAAGTAGACACAACGATCGTCAATCTGCTGCAGAACGAGAACTGCGTGGAAGTGAACGGCATCCTCAACATTCTGAACAACACGTCTGTGGAGAGCAGCGACGCGGCGGCGAAGCTGAAAGATCTGGCAGAATTGGAGCAACGGCTGGAGACCACGCAGAATCCCGAGGAGCTCTTCAGGATCGACGGAGAGGAGGTCAAGGTGGACGACAACATGGAGCACGTAGTGAACGACAATCAGAACGGTTACGCGTGTAAAATATGCCGCAAGTTTTACGAACGCCGGGATAAGTGCACGGTACACGTAAAGACGCACTTGGGCATCAAACAGTACACGTGTGTCGTTTGCAACGCCAAGTTCGTCTGCAAGTCCGACGTGATGAAGCACATCCGATGTTCGCACACCAATCCGAGGCCCATACAGTGTCCCAAGTGTCCGAAACGATTCAAGTCCAAGTTCTATTTAGCTGAGCACGACAACGTTCACAAGGGTCTGCGACCGTACGTCTGTTCGGATTGCGGACAAAGCTATCACCACAAGGTCTCGTTGCAGATTCACATGAAGTCGCATCAACCGCCGCAGAATCTGGCCTGCGAGTACTGCGGCAAGGTCTTTCCGCATCGCACGCGGTTGCTTGGCCACGTGACGAGTGTTCACATGAAGAAGCGACGCAATTTCCGTTGCCGTTTCTGTTACAATCTTTATTCTAGTTTGTCGGTGCTGAACGAGCACATCAAAACTCGCCACGCGACCACGTACACGTGCGAACAGTGCGGCAAAACGTTCAAAGTCGCATCCAAGTACAAGGCGCATGTGCTGCAGCACTCGAATCCCAAGCCGTTTGTGTGCAAGGTCTGCAACAATCGCTACGCGTCCAAGGCGTTTCTCAACGAGCACTTGTTGAAGCACGAGGGTCTGCGGAAGCACGTGTGTCCGAAGTGCGGCGCGAGTTTCGCGCAAGCGAGCCACCTGGCCGCCCATCGTTACGTGCACGGCGAGAAACTGCACGCGTGTCCGGAATGCGGCAAGAAGTTCAACCGCCAGGACAACATGAAGGTACATCGGAGACGACACTTCGAGGAGAAGAAGACTGGGACCAACGGCAAACAGAAAGCCGCGTCCAATAACAACGACCCGGCCTCCACCGCGTCCACTAACGAGAAATAA
- Protein Sequence
- MDVQEGQSKICRLCGQYERIYIDVFGEEGVKRYLGLKIHTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQKLRNQYKLPPLTESAAVKDEESPSTVGASSSDNNNSIEKNLNSSSNSQDEEEDQSENIKSIVEKDSVESPKKKTKTQRSLRSQQQHASKCNATSNVEKNVQNHSESETSLTRWLRSKQSAESLASSAASEEETPIANRLRSHNNVETNANNTHSVNTSSNSNNNNETTNKQNSKQHPMAIELPTTALNKLVKIISDSPDVEVSVKETTRSRNNDAEDNSFTVELCKKQNDEVSTVRARVFPNQGYCQVDTTIVNLLQNENCVEVNGILNILNNTSVESSDAAAKLKDLAELEQRLETTQNPEELFRIDGEEVKVDDNMEHVVNDNQNGYACKICRKFYERRDKCTVHVKTHLGIKQYTCVVCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLAEHDNVHKGLRPYVCSDCGQSYHHKVSLQIHMKSHQPPQNLACEYCGKVFPHRTRLLGHVTSVHMKKRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEQCGKTFKVASKYKAHVLQHSNPKPFVCKVCNNRYASKAFLNEHLLKHEGLRKHVCPKCGASFAQASHLAAHRYVHGEKLHACPECGKKFNRQDNMKVHRRRHFEEKKTGTNGKQKAASNNNDPASTASTNEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267055; iTF_01271441; iTF_01267779; iTF_01269268; iTF_01270009; iTF_01268498;
- 90% Identity
- iTF_01268498;
- 80% Identity
- -