Pgra002133.1
Basic Information
- Insect
- Pseudomyrmex gracilis
- Gene Symbol
- ZFY
- Assembly
- GCA_002006095.1
- Location
- NW:123210-164574[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.041 2.4 8.1 2.6 2 23 413 435 412 435 0.92 2 17 0.0022 0.13 12.1 0.5 1 23 466 489 466 489 0.92 3 17 0.0008 0.048 13.5 2.5 1 23 495 518 495 518 0.97 4 17 0.0006 0.036 13.9 5.0 3 23 525 546 523 546 0.95 5 17 3.7e-05 0.0022 17.6 0.2 1 23 551 574 551 574 0.97 6 17 6.4e-06 0.00038 20.1 0.4 2 23 581 602 580 602 0.97 7 17 5.8e-06 0.00035 20.2 1.6 1 23 608 630 608 630 0.98 8 17 0.00015 0.0089 15.7 1.9 1 23 636 658 636 658 0.99 9 17 0.29 17 5.4 0.8 2 23 882 904 881 904 0.87 10 17 0.0031 0.19 11.6 0.4 1 23 916 939 916 939 0.96 11 17 0.0038 0.23 11.3 5.6 1 23 952 975 952 975 0.94 12 17 9.4e-05 0.0056 16.4 4.7 1 23 981 1003 981 1004 0.96 13 17 0.00012 0.007 16.1 0.9 2 23 1010 1032 1009 1032 0.96 14 17 0.0014 0.086 12.7 3.8 1 23 1037 1060 1037 1060 0.98 15 17 7.6e-07 4.5e-05 23.0 0.5 2 23 1067 1088 1066 1088 0.96 16 17 5.3e-05 0.0031 17.2 0.4 1 23 1094 1116 1094 1116 0.95 17 17 4.3e-05 0.0026 17.5 1.0 1 23 1122 1144 1122 1144 0.98
Sequence Information
- Coding Sequence
- ATGAACAACAGCCGAGTTCTTCTCGACAACGGCCGGACAGCGATTGGGTTACTGGCGACGACAGTACGTTACGGGCGCGGCTTTGTCCTTAAGGCTGGCGTTCTACACGGGAAGATGTCCTCACTCGACTACCTAGATCTGTGTCGACTCTGTCTCGTAAAGGATGAGGTTTCTGTGCCGATTTTCGAAGGCGAGGGCGACGTGCGGCAGATCTTTCTCAAGATCACCGCCTGTTTGCCGGTCAAGGTTGCCAGAGAAGATAAACTACCTAAGAAGATATGTAAGGAATGTGTATGCAAGGTAGAATGTTTTTATTCATTCTGCAACACTACTGCAAACTCGGAGAAGCAATTGCTGCAACTACTAGGAGATGTTCAAATGGAAGATGACAAACAAAACTATATTGGGAATGTTCTCAGTTCGAACGAAATGAGAGCAGACGAGAACAGCAAAAACAACAGATTAGAAGACACTGTAATGCATCAAGTGGGCGAACATCAAAGCAGTATGAACATAATGGACAACATAATGGACATGCCGATGATGATATCGGGCACTACTCAACAAATAACCTCAGTTCCTATGGATAACACTGGAGAGTCAGTACAAAATGTTTCAGTAGCCGGACCAAGCACACAAATGGCACACGAGCAGGTACATATTAATCAGAATCAGTCAGATACCCCTATGCAacaagaggaagaagaagagagtaGCGAAGAAGACGAAAATTTTGAAGAGGAATGCGATGCGGATGAAGGCCTACCTGTAAAAGAAGAAAGTGAAGAGGATCCTAACAACAGGAGAGCAGTCGAGCCTACGACGTTTGTAAATGTCTCTCTGGCGTGTGAAGAAGCAGGTCCTTCCGGGCTTCAGCAACAAAAGATTACGGAACTTCCCGATAACATGGTGATACCGCAAACAGAAGACGTAGATCCGAAAACTGGGAAACAACAAGGGGGACGATCGGTGGACAAGTCCGTCAAGAAAGTAACAATTAGACTCAGAGACATAGCGTCTATCACTGAAGGCAGAAAAAGTGAAACCAAGAACATCTGCAAAACCGTGGTGTTGAAAGGCAATGTCGCTTCTACGCATTTTCTAAACAAGTACTTGATACTGCCCGTAAGTGAGGAACGCAAGTTCGCGCAcgtaaagaaaatcaaaaccACGACGAAGAAGGAAACACCCACCACCACGTTCTCTGACGCAGAACCGCGCAATCAAGAAGCTATCTCGTGCACGAGGTGCAATTTTCGATGCAAAAAGAGATCCACGTTGATCGCGCATCTGGCCGAGAAGCACGAGGAGACCGCGACCGACGACATAGTTGCCAAAAACATGGCCGTCGACGATATAGTCGACAACGACGCGGTCGCCAACAACGAGCCCGAGTTCGTATGCTCCATATGCGCGCAGATATTCGCTCGCAAGGAGACTCTGAACTCGCACTTCGTGCGCAAACACACGTACTCGTACAAGTACTCGTGCAATTTCTGCGACAAGAAATTCAAGATCAAGGGCGATCGCACGACGCACATCAGGCTGAAGCACATAGAGACGAACGTGATTTGCGACGTGTGCGGCAAGAGCTGTCGGAACAGTCACAGCCTGTACACCCATCAGAAGCACGCCCATTACAAGCCCAAGTACGAGTGTCCGATCTGCAAGAGACGCGTGGTCTCGCAGAAGAATCTGGATCGTCACATAGTGACGCAGCAcgaaaagaaggagaagacGATGTGCGAGGAGTGCGGCAAGACCTTTCAGGAGGGCTACGATCTCAGAAAGCACATGAGGATTCACACGGGCGACAGGCCGTACAAATGCACGGAATGCGAAAAAGCCTTTGCCAGACACAGTAGCCTCAGTCAGCATTTGCTTCTGCACACCGGCGAACGGCTCTACAAGTGCGACGTGTGCGAAAAGGCGTTCACGCAGAAGGCTGGTCTTATTTGCCACAGAAAGACCCACTCTGGCAATCTTCCGCCACTTCCGGTGATGCACATCGATCATATACTCAAGAACAAgttcacaaagaaaTATCCATTAATTATTAGATATGGTTTAAGGTGCGCAAAAGACGAGTACAATGCTCGGggtatttttatctttgataaAGAGTCCGTGGTGATGAAGAAGTGGCAGATCTTGGAATTCGACGGCAAACCGTATTACGCTTTCATACCGGAAGAGGACGCGCCTCTGATAGACGACGAGGACGCGCAGATGCGCGCGGAGGACTCGTCGTTCGAGGAGCTAGAAAGTCACGCGGACGAGGAAGAAAGCGATGTCAGGAACGGGATGAAGAAGGAGCTTTTCAAAGATGAAGTCTCGCGTTACGATTCCATAGATGAAAAATTGCAAGAGGTTGTTCTCAATGAAAGTTACGAAGAGGTAAAGCCGATTCTGTTGAACGGCGAACCCGTTGACGAGAGTAACGAATTCTATCAGTTAAAGGTGCAGGGCAATAACGTGTTCTTCGAGAAACTGTCCacgaaggaggaagaggatcGTCAAACAGAGGACGGGTCGAACGACGAGGGTGAGGTGGAGTATCTCGAGGAAGAACTGGTGAGCAATTCTGTTGACGACAACGTGGTCACGCAATCCGCGCAACCTTCTGCAAAGGGTGAGTCTATCAAGTGCAAACTGTGCTCGGAGACGTTCGTCACGGAGATATCCTGCAGAAAGCACGTAGCGTGGATTCACAAGAAGCAGAAGTGTATAAAAGAGAACGGCAGTTTCATATGCGCCGTGTGCGATTACAGCACCACGAAGAAGGCTCAGTTCGCCACGCATCTGGAGAGGAATCACGAGACCTGGTCGAGAAAACGGTCGATGAAGAGATTGTTTCCGTGCACAGTTTGCGGCTTCACCTGCAGATCTAAGCACTCTTTGCAATCACACTTTATCAGAAAACACACCGATAGATACGAGTACCAGTGTACCTTCTGCTCGAAGAAGTTCAAGGTCAAGGGCGATCTGACGAATCACGTGCGATTCCATCACAAGGAGAAGCCGGTCAAGTGCGACGTGTGCGGCAAAATGTGTCAGAACAGCAGTTCTCTGTACGTGCACCAGAAGTGGGCGCACTTCAAGCCCAAGTTCGAGTGCCACATCTGCCACAGGCGCATGGTTACGCAGGAGAATCTGGATCAACATCTGAAGACGCAGCACGAGAAGCGCGACAAGATCGTGTGCGCCGAGTGCGGCAAGACCTTCACGAAGAAGGACTCGTTCAAGAGGCACATGGTCGTGCACACGGGATGCAAACCGTACTCGTGTATAATCTGCAGCAAACCGTTTGCCCGAAGATCGCAGTTGCGACAGCACTTGCTCATTCACACCGGCAAGCGACCGTTTGTGTGCGACATCTGCGGCAAAGCGTTCACGCAAAAGCCGGGTCTGATCTGTCACAGGAAAACTCATCCCGGCACCCATCCGCCCTTGCCCGTCATGCCGATCGGCGACATCGTCAAGGAATTTACCGAGGGATACGCGCAGGAGAACGAGTCTAACGCGCAGGACAACGAGGAGGAGAAGATCGACGAGGAAACGTGA
- Protein Sequence
- MNNSRVLLDNGRTAIGLLATTVRYGRGFVLKAGVLHGKMSSLDYLDLCRLCLVKDEVSVPIFEGEGDVRQIFLKITACLPVKVAREDKLPKKICKECVCKVECFYSFCNTTANSEKQLLQLLGDVQMEDDKQNYIGNVLSSNEMRADENSKNNRLEDTVMHQVGEHQSSMNIMDNIMDMPMMISGTTQQITSVPMDNTGESVQNVSVAGPSTQMAHEQVHINQNQSDTPMQQEEEEESSEEDENFEEECDADEGLPVKEESEEDPNNRRAVEPTTFVNVSLACEEAGPSGLQQQKITELPDNMVIPQTEDVDPKTGKQQGGRSVDKSVKKVTIRLRDIASITEGRKSETKNICKTVVLKGNVASTHFLNKYLILPVSEERKFAHVKKIKTTTKKETPTTTFSDAEPRNQEAISCTRCNFRCKKRSTLIAHLAEKHEETATDDIVAKNMAVDDIVDNDAVANNEPEFVCSICAQIFARKETLNSHFVRKHTYSYKYSCNFCDKKFKIKGDRTTHIRLKHIETNVICDVCGKSCRNSHSLYTHQKHAHYKPKYECPICKRRVVSQKNLDRHIVTQHEKKEKTMCEECGKTFQEGYDLRKHMRIHTGDRPYKCTECEKAFARHSSLSQHLLLHTGERLYKCDVCEKAFTQKAGLICHRKTHSGNLPPLPVMHIDHILKNKFTKKYPLIIRYGLRCAKDEYNARGIFIFDKESVVMKKWQILEFDGKPYYAFIPEEDAPLIDDEDAQMRAEDSSFEELESHADEEESDVRNGMKKELFKDEVSRYDSIDEKLQEVVLNESYEEVKPILLNGEPVDESNEFYQLKVQGNNVFFEKLSTKEEEDRQTEDGSNDEGEVEYLEEELVSNSVDDNVVTQSAQPSAKGESIKCKLCSETFVTEISCRKHVAWIHKKQKCIKENGSFICAVCDYSTTKKAQFATHLERNHETWSRKRSMKRLFPCTVCGFTCRSKHSLQSHFIRKHTDRYEYQCTFCSKKFKVKGDLTNHVRFHHKEKPVKCDVCGKMCQNSSSLYVHQKWAHFKPKFECHICHRRMVTQENLDQHLKTQHEKRDKIVCAECGKTFTKKDSFKRHMVVHTGCKPYSCIICSKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGTHPPLPVMPIGDIVKEFTEGYAQENESNAQDNEEEKIDEET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -