Basic Information

Insect: Pseudomyrmex gracilis
Gene Symbol: -
Assembly: GCA_002006095.1
Location: NW:227602-244934[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.1e-05 0.0024 17.5 1.4 1 23 451 473 451 473 0.96

2 18 7.1e-06 0.00042 19.9 1.9 1 20 479 498 479 501 0.94

3 18 1e-05 0.0006 19.4 1.4 1 23 507 529 507 529 0.98

4 18 5.9e-05 0.0035 17.0 4.4 1 21 535 555 535 557 0.95

5 18 8e-06 0.00047 19.8 5.6 1 23 563 585 563 585 0.99

6 18 1.8e-05 0.0011 18.6 5.3 1 23 591 613 591 613 0.97

7 18 6.9e-05 0.0041 16.8 6.9 1 23 619 641 619 641 0.96

8 18 6.8e-08 4e-06 26.3 2.7 1 23 647 669 647 669 0.98

9 18 5e-05 0.003 17.3 6.7 1 23 675 697 675 697 0.97

10 18 1.6e-05 0.00092 18.9 5.8 1 23 703 725 703 725 0.98

11 18 3.2e-07 1.9e-05 24.1 2.8 1 23 731 753 731 753 0.98

12 18 6.1e-06 0.00036 20.1 7.8 1 23 759 781 759 781 0.98

13 18 1.9e-05 0.0011 18.5 9.1 1 23 787 809 787 809 0.98

14 18 2.5e-05 0.0015 18.2 7.5 1 23 815 837 815 837 0.98

15 18 0.0012 0.072 12.9 8.8 1 21 843 863 843 865 0.94

16 18 9.3e-06 0.00055 19.6 0.4 1 23 871 893 871 893 0.98

17 18 0.022 1.3 8.9 4.5 1 23 903 925 903 925 0.98

18 18 3.6e-07 2.1e-05 24.0 1.3 1 23 931 953 931 953 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.1e-05	0.0024	17.5	1.4	1	23	451	473	451	473	0.96
2	18	7.1e-06	0.00042	19.9	1.9	1	20	479	498	479	501	0.94
3	18	1e-05	0.0006	19.4	1.4	1	23	507	529	507	529	0.98
4	18	5.9e-05	0.0035	17.0	4.4	1	21	535	555	535	557	0.95
5	18	8e-06	0.00047	19.8	5.6	1	23	563	585	563	585	0.99
6	18	1.8e-05	0.0011	18.6	5.3	1	23	591	613	591	613	0.97
7	18	6.9e-05	0.0041	16.8	6.9	1	23	619	641	619	641	0.96
8	18	6.8e-08	4e-06	26.3	2.7	1	23	647	669	647	669	0.98
9	18	5e-05	0.003	17.3	6.7	1	23	675	697	675	697	0.97
10	18	1.6e-05	0.00092	18.9	5.8	1	23	703	725	703	725	0.98
11	18	3.2e-07	1.9e-05	24.1	2.8	1	23	731	753	731	753	0.98
12	18	6.1e-06	0.00036	20.1	7.8	1	23	759	781	759	781	0.98
13	18	1.9e-05	0.0011	18.5	9.1	1	23	787	809	787	809	0.98
14	18	2.5e-05	0.0015	18.2	7.5	1	23	815	837	815	837	0.98
15	18	0.0012	0.072	12.9	8.8	1	21	843	863	843	865	0.94
16	18	9.3e-06	0.00055	19.6	0.4	1	23	871	893	871	893	0.98
17	18	0.022	1.3	8.9	4.5	1	23	903	925	903	925	0.98
18	18	3.6e-07	2.1e-05	24.0	1.3	1	23	931	953	931	953	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAACAGCATGCATTGCCAGCGACCACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTGCGACCGCGAGTCTTGGCAATGTAGGGAGTATTCCCCATTCATCCGCGGACCTGCGTGTAGGTACTGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTGTTTCCCGGACCGCTACCTCAGGTCTCGGTCTACCACTCCTCGCATAGGAGTGGTGGAGGTGGGGAAGCATCTTCCTCCAAAGAGCCAGCCTCTTCACTCAACCAGGAAATGGCGTTGACTTCCAGCTCGCATCATCAGCAACAATCAACAGCCGcgcatcatcatcatcagccTTCAGTTAGCAGCAGCAGCCATCACAGTTCTCTGCAGTCAAATCCACAGATTCCCGTATCTCTTCCCGGTTTGAATTTAGACGGCGCACACATACCGGCGAGTGTTAGTCATCTGCAGGCTGCACATGCACAAATGCAACAGCAAATGCAGGCGCAAGCACAGCAGCAGCTGCaccagcagcaacaacaacaacagtcgcagcagcagcagcaacagcagtcTCATCACCAGATGCAAAATCATCAGAACGCTCAGAACAATGGACCGTCCGCGCACAATCAGACGGCACAGCGAGACGACAACAAAGTCAAGGACGAGGGCGGCAGTTGCACCACTGAGCGTTGTAGCGACAATCAGGTTCACTGTCAAGTTCAATGCGATCTACAGTTACAACCGCCGCAGGATCTTCAGCAGAGCTTGatgcagcaacagcagcagcaacaacagcagcagcagcaacagcaacaacagaTCGGGGTCAACATCAGCGGAAATTCCACTACCGAAGGGGGAAGTCAAAACAATTCCGAAAAACctgagaaagaaaaggaattGCGACAGCTGAATATGACCCAatttCAAGTTCCTGATTTGAAACCAGGAGGACATATGATGGATGTGAGAACGGCGGACGGATCGGTGGTGAAAATCAGCGCGGGAAACGAGCAAGATTTGGCGAAGACTCTTGGTGTGGAAATGgtacaaaatatgtacaagGTGAATGTCGAGGATATTAATCAACTCCTGGCGTATCACGAGGTGTTCGGAAAGCTGCAAAGTGAAATTGCAGCCGGTACGACTTTGGTCGGCAGCACTGTTCCTACGCAAACAGTCACCACGATACAGAACGGCACGCCGATCGTGCAGCAAGTTCAACTCAACAAATTTGACATAAAATCGAGCGACGGGGAGGCAACGCCTGGCCCAAGCGCGTCACCGGTGTCGGTTGGTAGTCACGCTTGCGAAATATGTGGGAAGATCTTCCAATTTCGTTATCAACTCATTGTGCATCGCAGATATCACACCGAGCGCAAACCGTTCACGTGTCAGGTGTGTGGTAAAGCGTTCTCGAATTCGGGCGATCTGACGCGTCACGGCAAGTGTCACCTGGGTGGATCTATGTTCACCTGCACAGTTTGTTTCCATGTTTTCGCAAACGCGCCGTCACTGGAGCGTCACATGAAGAGACACTCCACCGACAAGCCGTATAACTGCACGGTCTGTGGCAAAAGCTTCGCGCGTAAGGAACATTTGGATAATCACACGAGATGCCACACCGGCGAGACACCGTATAGATGCCAATACTGTTCCAAGACGTTTACTCGAAAAGAACACATGGTAAATCATGTTCGCAAACACACTGGCGAGACTCCGCATCGATGTGATATTTGCAAGAAGAGCTTCACTCGCAAAGAACACTTTATGAATCACGTAATGTGGCACACGGGAGAGACTCCGCATCATTGTCAAGCGTGTGGCAAAAAGTATACTCGCAAAGAACATCTCGCTAATCATATGCGTTCGCACACGAACGACACGCCGTTCCGTTGCGAAATATGCGGTAAGTCATTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGCGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACGCGAAAGGAGCATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAAACACCCTTCCGCTGCTCGTATTGTCCAAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGTCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAGAGGACGTTCACTAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCCTCGCACTGTTGCAACGTGTGCTCCAAACCGTTCACAAGGAAGGAACATCTTGTGAATCATATGCGTTGCCACACCGGTGAACGTCCATTTGTGTGCACAGAATGTGGAAAGAGTTTCCCATTAAAGGGCAATCTGCTCTTCCATATGCGCTCACACAATAAGGGCAGTAACGCTGAAAGGCCGTTCCGCTGTGACCTGTGCCCCAAAGATTTCATGTGCAAAGGACACTTAGTCTCGCATCGGCGTTCGCACTCGGACGAGCGGCCGCATAGTTGCCCGGATTGCGGCAAGACCTTCGTCGAGAAAGGCAACATGCTGCGGCACTTGCGCAAGCATGCGACCGAAGGACCGCCGACGCAAGTTAGTACACCGTCGGCCATACCGCAATCGAGTGTTCTACCGAtaccggcggcggcggcagtcCTGGTCGGACATCCATTAGCGCCTCCAGCACCTACCGTCGTGCCGCAACACACAGTGGTCGTGCCGACACCGCCCGGTGTACTGGCGtcgtattaa
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATASLGNVGSIPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHSSHRSGGGGEASSSKEPASSLNQEMALTSSSHHQQQSTAAHHHHQPSVSSSSHHSSLQSNPQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQMQAQAQQQLHQQQQQQQSQQQQQQQSHHQMQNHQNAQNNGPSAHNQTAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQQQQQIGVNISGNSTTEGGSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNSGDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHSTDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHATEGPPTQVSTPSAIPQSSVLPIPAAAAVLVGHPLAPPAPTVVPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00899003;
80% Identity: -