Pgra000363.1
Basic Information
- Insect
- Pseudomyrmex gracilis
- Gene Symbol
- lolal
- Assembly
- GCA_002006095.1
- Location
- NW:120663-123465[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-13 2.5e-10 39.2 0.1 1 41 307 347 307 350 0.93
Sequence Information
- Coding Sequence
- ATGAGTGCACACTACTGTCTCCGTTGGAACAATCATCAAAATAACATGATAAATATCTTTCacgatttattaaagaaagaaGCTTTTACCGACGTGACTCTTGCCGTGGAAAACCGTACCATCAAGTGCCACAAACTGATCCTAGCCGCGTGCTCGCCTTACTTACGAAAGATTCTCGAAGAATCGCCGTGCAAACATCCGACGATCATATTCAAAGACATCCAATACATCGACTTGCAGGCATTAATCGACTTTATGTATAACGGCGAGGTGAACATTATGCAGGATCAGCTTGCCGGTCTGCTGATGACCGCGGAATTTTTAAAAGTGAAGGGTTTAGTAGATATGAACAGTAGAGATGACGACAAAACCCCGACCCAGCTCAGGGATGTGTCACCACCGCCCGCTATCAGTACCACAAACAGAGATACAGTAATGGCGTCTAGTAGCAGCGTCCACTCGTCACCGCCGCACTCCACCTACAGTGATAGAAGCCAATATTTACCGAGAACCGATACGATTTCTTACTTCTACCGACCCCCCGCAGTGGGCTTGAACACTTCGCCCGAGTGCACCACCCACCATAACTACGAAGCCTATGATAATCTTATAGGAAGAACCTTAACAGAAACCTTTAACAAGAATCGATTGAAATTAAGCGACACGCCGATACTGCGTACGGCGCTCGGTCAGAACTCGCTGCTGTCGTCCGCTCTTGACAATTTGCACTATTATCACAATCACCCTATGAACAACATGATCTCTACTAGTATCGACCTGACTCACAGAAGGGAATCACCTCTCAGCCCGCCCGACATAgatgaagaagagaaaaagtcgCCGAAACAGAGAGAACCAACAAAAGAGAAATCAACAGATCTGCCTGCGAAACCTGAGTGGAAACGATACAAACAGTACACCCGAGCGGAAATCGATGCGGCGATAACAGCGGTGAAAGAAGGCATGAGCGCGGTGCAAGCGGCCCGTAAGTACAATGTACCTTCGCGCACTCTTTACGATAAGGTGAAGAAACTCGGTATCGCGCGGGTCAAGCGCTCGTCTACCAATGGCAACAATACGGCAAGTTCCTTTTACGATACCGACGATAACTTGAACGGCATTTATAATACTCCGTCCGAAACCGACAACAAAAACGGTTGCAATGTCAAGAAAATACGACAGGATCACGATTCGGCATCAGACTCAAGCGCGCGTTGCGTTGTAAGTCCGGTTATACGTTACGCTAATCAAATGCAGCAGCTAAGTATCAAAGACGAGACAGGGGAGAAATACGAGGTGGAGGATCTCTCGATGTCGAGTCGTAAGTTTGACACGCCGGTGGTGACATTGAAACCTTCCACACAGGATAAGATCAAGGAAGAAACACAGGATGCCGATCAGCAATCGGACAACGACCAAAATTag
- Protein Sequence
- MSAHYCLRWNNHQNNMINIFHDLLKKEAFTDVTLAVENRTIKCHKLILAACSPYLRKILEESPCKHPTIIFKDIQYIDLQALIDFMYNGEVNIMQDQLAGLLMTAEFLKVKGLVDMNSRDDDKTPTQLRDVSPPPAISTTNRDTVMASSSSVHSSPPHSTYSDRSQYLPRTDTISYFYRPPAVGLNTSPECTTHHNYEAYDNLIGRTLTETFNKNRLKLSDTPILRTALGQNSLLSSALDNLHYYHNHPMNNMISTSIDLTHRRESPLSPPDIDEEEKKSPKQREPTKEKSTDLPAKPEWKRYKQYTRAEIDAAITAVKEGMSAVQAARKYNVPSRTLYDKVKKLGIARVKRSSTNGNNTASSFYDTDDNLNGIYNTPSETDNKNGCNVKKIRQDHDSASDSSARCVVSPVIRYANQMQQLSIKDETGEKYEVEDLSMSSRKFDTPVVTLKPSTQDKIKEETQDADQQSDNDQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01270615;
- 90% Identity
- iTF_01270615;
- 80% Identity
- iTF_01270615;