Pgra008026.1
Basic Information
- Insect
- Pseudomyrmex gracilis
- Gene Symbol
- ttk
- Assembly
- GCA_002006095.1
- Location
- NW:10113-13018[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-07 0.00017 20.5 0.0 5 44 188 227 187 228 0.86 2 4 3.2e-10 1.6e-07 30.2 0.0 2 40 235 272 234 278 0.89 3 4 0.19 96 2.1 0.0 21 34 305 318 291 324 0.80 4 4 1.5e-10 7.7e-08 31.2 0.1 4 38 349 383 346 390 0.89
Sequence Information
- Coding Sequence
- atgAACGAGTTTACGTGTATGAAGCAGCATGAAGGCAATCACATTTACCGCTTCAAATGGAACGATTATCAAATTTATCTAGCTGATGTTGTGCGACAACTGTTGCAGGAAGATTGTATGGTGGACGTTACACTTTCCGCATCAGGCGAACGTATTCATGCGCATCGCATCGTGTTGTGTGCATGTAGCACTTTGTTCCAAGAGATTCTTAGTCAAGTTACAGAAGATGATCCAACCATTATTCTTAGTGACATATCTTCTCAGGATATAAAATCCATCattgaatttatatatcatGGTGAGGTTCGAGTTCCTGTTGACAATATCAGCAGTTTACTTGAGGCTGCGCAGTCATTAAAAATAAGTGGTCTTGTTGATATAAATGGACTTGAGGAAAATCAAAGGATCGTAAACAGACAAGATCTTGTAGAAGAAAATGCAACAGATGAAactgaagaaaataaatccaaGAATTTACAAAGTCAACAAACTattgagaataaaaagaaacgtcaACACAGGATCCGTGAAAGCACAAAGAAAGACTACAATGATGTTATGTTACAATCTGCAATTGaagatttgaaaaaaggaaTGCCTTTGATAGATGCTGCCACCAAACACAATATACCTCGCTCAACGTTGTATATGCGAGCGAAAGcgttacatatacatttaagTGCGTCAAGAAATGGATATCCCGAAGAATGTATGAATGCAGCGATGTCTGCTGTAATGAGTGGTTCGAGCTTGCAACATGCGTCGGAAGTGTATAGGATCCCTAAAACTGTATTATGGAGACGTATGCAAAAAAAAGGCTACCAAATCTTGCGTCCTGAAATGAAGAGATCGTACGCTTTAGACACAAGAGAGGCCGCTGTTAAAGCTttagagagaggagaaaatcTCACAAAAGTCGCGCTAgaatttaaaATACCGAAGACTACGTTGTTCAGAGACAAAGCGCGATTAGTGAATCAAGGTAAATTACCATTGTCGTTTTGGAAGAAACGTAAAACGGAGAatgaagaattaaaaaaatcgcgatTGGAAAAAGCTGTGGCTGCTTGCAAAGGTGGTAAAATGTCTCAAGCTGCAGCGTCTATTACGTATCAAATTCCGAAAACTACGATATGGCGAAAGCTTCAGCAAGAtgggaaaaaaatgaaaaaatcatcaaatataaaaaaagaaaaaacgatcgAAAAGTCACAACAGGATAATGAGATAAAAACACAAGAAGATTCCAACTTCAACTATTGTGAGgTTTCATCAGAAATACCTGTAACTTATATAGATGAGAGTAGTATACCCGAGGACTCTGTAATAATCTTGACAACAGAGGATTTAAATGAATTGAATTTAGAAGAAGGAAgacaaattattgtaaataccGAATCTGGGCAAGAATACGTACCATGCGCGATAAGTATTGAAGAAAGTTCAAATTATTCAGAAGACGCGGGTTAA
- Protein Sequence
- MNEFTCMKQHEGNHIYRFKWNDYQIYLADVVRQLLQEDCMVDVTLSASGERIHAHRIVLCACSTLFQEILSQVTEDDPTIILSDISSQDIKSIIEFIYHGEVRVPVDNISSLLEAAQSLKISGLVDINGLEENQRIVNRQDLVEENATDETEENKSKNLQSQQTIENKKKRQHRIRESTKKDYNDVMLQSAIEDLKKGMPLIDAATKHNIPRSTLYMRAKALHIHLSASRNGYPEECMNAAMSAVMSGSSLQHASEVYRIPKTVLWRRMQKKGYQILRPEMKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVNQGKLPLSFWKKRKTENEELKKSRLEKAVAACKGGKMSQAAASITYQIPKTTIWRKLQQDGKKMKKSSNIKKEKTIEKSQQDNEIKTQEDSNFNYCEVSSEIPVTYIDESSIPEDSVIILTTEDLNELNLEEGRQIIVNTESGQEYVPCAISIEESSNYSEDAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267677;
- 90% Identity
- iTF_01267677;
- 80% Identity
- iTF_01270629;