Pfla002652.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- nfxl1
- Assembly
- GCA_014825475.1
- Location
- QVNW01000736.1:1280-4145[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.1 1.3e+04 -3.3 1.1 15 19 126 130 125 130 0.81 2 17 0.15 1.8e+03 -0.5 0.8 4 10 161 167 160 167 0.95 3 17 5.8e-08 0.00068 20.0 15.1 1 18 175 191 175 192 0.98 4 17 8e-08 0.00095 19.5 11.7 1 18 229 245 229 246 0.93 5 17 2 2.4e+04 -4.6 1.0 6 10 271 275 271 275 0.81 6 17 0.014 1.7e+02 2.7 10.1 1 19 281 300 281 300 0.90 7 17 0.014 1.7e+02 2.7 13.3 3 18 338 353 326 354 0.86 8 17 0.0086 1e+02 3.5 7.6 1 12 388 399 388 399 0.94 9 17 7.6e-07 0.0089 16.4 14.4 1 19 419 437 419 437 0.91 10 17 1.4 1.7e+04 -3.6 0.7 6 10 465 469 464 469 0.88 11 17 0.00011 1.3 9.5 9.8 9 19 484 494 482 494 0.90 12 17 0.00067 7.9 7.0 8.1 1 12 504 514 504 514 0.95 13 17 0.89 1e+04 -3.0 5.8 14 18 549 553 549 554 0.89 14 17 0.0041 48 4.5 8.7 1 12 590 601 580 601 0.80 15 17 2 2.4e+04 -5.3 3.3 15 18 615 618 614 622 0.50 16 17 0.005 59 4.2 13.6 3 18 631 646 630 647 0.91 17 17 0.001 12 6.4 15.7 1 16 692 706 692 712 0.89
Sequence Information
- Coding Sequence
- ATGCAAAAATTTAAAATAGCCCAGGCACAAAATAAGCTGTCTATTGAAAGACACCTGGAAGCTATTGCATTATTGAATTCGTCTAGTGAGGACGAAGATGAAGCAAATGAGGAAGACGCGCAACATATAGTGGATAAAGTAATATCCGCTTATCAAGGGCAAAGAGCAGATGCAGAGAAAGTGATATCGTATTTAATTAATTCTCTTCAATCTAGCAGTGTTGTCTGCTTGATATGCATATCAACCGTCAAGAAGACAGACCCGATATGGAACTGCTACAAGTGTTATGCATTTATGCACATGTCCTGTATCTTACATTGGATCAACGACAGTTTGAGATACAAACGGGATAAAGGAATTGCACCAATTTGGGCATGTCCAAAGTGTCGCACGGAATATGAGCAAAACCAAGTCCCGAGATCGTACGAATGTTTCTGTAAAAAGATCGTAGATCCTCCGTATCAACCGTGGAGCATTCCGCATTCTTGCGGCGAAACGTGCGGCAAGCTCCTGCAACCAGAATGCGGTCACAAATGTGTGCTGCTTTGTCATCCCGGTCCGTGTCCGCCGTGTGCAAAGACGATTAGTATTAAATGCTACTGCGGCAAGCAGCCGGCACAACTACGTCGATGCAACGCCAAAAATTGGAGCTGCAAAACTAAATGCAACAAAAAATATGAGCTCTGTTCGCACTCTTGCAATAGTTTGTGTCACTCCGGAGATTGTCCTTCCTGTGAAGAAATAATATTATTGAAATGCCGTTGCAAGAGCAATGCGAGAGAAGGGAGATGTTGCGAAGGTACGTGGATTTGCGACAAGCCCTGTAACAGAAAATTCTCCTGCAACGTACACGTTTGCAAGAGCACTTGTCATTCACCTGACGATTGTGACAATTGTCCTTTCGAGAAAAACCGAACTTGTCCATGCGGAAAGAAACGATACGAAGTTTCGTGCGAGCAGCAGCAAGTGCCGACATGCGGCGATACCTGCGGCAAGCTGTTGGACTGCGAATCGCACTACTGCAGCATGAGGTGTCACACTGATCGATGCGGTCCGTGCTTAGAAGTGGTGACCAAGTCCTGTAGATGTGGCAGTTATACGAAAGAACTGGCCTGTGTGAAGGAATATCACTGCAACAAAAAGTGCACGCAGATGCGCCAGTGCGGCAAGCACTTGTGCAACAGGAAATGTTGCGACTGCATATTGAAGAATACGCTCAATCCCTGCGAGAAAATGTGCGACAATACGCTCAAATGCCGTAAGCACAAATGCGGTGCTCCCTGTCACAGTGGTCCGTGTTATCCGTGCACCAGAACTGATGTCATACAGTGTCGATGCGGGAGTAACAAAATAACGGTGCCGTGCGGATCCAAGAGGAAGAAACCACCGCCGTGTAACAAACTCTGTAAAATTCCACCCATCTGCCACCACAGCAAGCAGGAAACGCACAAATGTCATCAAGGTCCGTGTCCACCGTGCAAGAAGATTTGCGGCATCACTTACAAGAGATGCGGTCATTCTTGCCAGGCCACTTGTCACACCAAGGTCAAGGTGAAGATCAAAACACAACCGGTCGGTTATCCTTGGGATAACAAACAGGAAAGGATAACATCAAAGGACGGTATAAAGCAACTGAAAACTTTACCGTGTCCACCGTGCGAGGTTTTCGTGCCCGTGACTTGTCTCGGAGGTCACGAGACGCGTCTTTGGCCGTGTCACATGTCGAGACCAAGTTCTTGCGGCAGAACCTGCGGACAACTACTGTCGTGCAAGAATCACACCTGTGAAATGATCTGCCACAAGATACGAAACAGCGAGAGTGAATCTGACAGTGGTACTCCGTGCATGGAATGCGAGAAGTCATGTCAGTTTGCGCGTCCGCAGGGTTGCACACACCCGTGTCTACAACTTTGCCATCCGAGATCGTGCAAACCGTGTAATCAACTGGTGCGAATCTCATGCCATTGCGGCATCAGCACTCTTTATCGGCATTGCGTAGATCTGACGTCCGCGACAAGTGAGAAACGAGACGAGTTACTCAAATGTGGAAATCAATGTCCTAAAAATTATTCTTGCGGCCATCGCTGCGTCAACGATTGTCACCCGGGACCGTGTAAAGGCGGAGAAGAATGTGGCAAGAAGATCAGATTATGGTGCAAGTGTAAACGGATAAAAAAAGATTTTCTTTGTTCGTTACTCCAGAAAGAACAGATCACTGTAGAATGCGACAATATATGCGAGTCGTTGATGAATGAAAGGAAAGAAGCTGAGGAAGCTAGGATAGCACAGAAGCGAGAAGTGGAGGAGCTGCGCAATCGAAAAGAGATTGAGAAATTCGAGAAGAAGTTCAAGCCACGACGAAAGAAGAAAGACAAGTACGAGAAGTCGGAGCAGTTGCGAGAAAACTTGGGAACGAGAGCTTGGAGATTTTTCAAAGGCTTCTTTTTTAATTGGAACGTTTCATTGATCATTTTATACTTTGTGCTCGTAGTAGTCTGCGTAATATGTATAGTGGCATCAGTGGCAATATGGAATGACGCAGGTGAATCCAATTTGCAAATTATAGACGTACAATGA
- Protein Sequence
- MQKFKIAQAQNKLSIERHLEAIALLNSSSEDEDEANEEDAQHIVDKVISAYQGQRADAEKVISYLINSLQSSSVVCLICISTVKKTDPIWNCYKCYAFMHMSCILHWINDSLRYKRDKGIAPIWACPKCRTEYEQNQVPRSYECFCKKIVDPPYQPWSIPHSCGETCGKLLQPECGHKCVLLCHPGPCPPCAKTISIKCYCGKQPAQLRRCNAKNWSCKTKCNKKYELCSHSCNSLCHSGDCPSCEEIILLKCRCKSNAREGRCCEGTWICDKPCNRKFSCNVHVCKSTCHSPDDCDNCPFEKNRTCPCGKKRYEVSCEQQQVPTCGDTCGKLLDCESHYCSMRCHTDRCGPCLEVVTKSCRCGSYTKELACVKEYHCNKKCTQMRQCGKHLCNRKCCDCILKNTLNPCEKMCDNTLKCRKHKCGAPCHSGPCYPCTRTDVIQCRCGSNKITVPCGSKRKKPPPCNKLCKIPPICHHSKQETHKCHQGPCPPCKKICGITYKRCGHSCQATCHTKVKVKIKTQPVGYPWDNKQERITSKDGIKQLKTLPCPPCEVFVPVTCLGGHETRLWPCHMSRPSSCGRTCGQLLSCKNHTCEMICHKIRNSESESDSGTPCMECEKSCQFARPQGCTHPCLQLCHPRSCKPCNQLVRISCHCGISTLYRHCVDLTSATSEKRDELLKCGNQCPKNYSCGHRCVNDCHPGPCKGGEECGKKIRLWCKCKRIKKDFLCSLLQKEQITVECDNICESLMNERKEAEEARIAQKREVEELRNRKEIEKFEKKFKPRRKKKDKYEKSEQLRENLGTRAWRFFKGFFFNWNVSLIILYFVLVVVCVICIVASVAIWNDAGESNLQIIDVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268678;
- 90% Identity
- iTF_01269484;
- 80% Identity
- -