Basic Information

Insect: Pseudomyrmex flavicornis
Gene Symbol: PRDM13
Assembly: GCA_014825475.1
Location: QVNW01000374.1:12576-14257[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.0008 0.085 13.7 0.2 1 20 165 184 165 186 0.95

2 4 4.1e-06 0.00043 20.9 1.1 1 23 339 361 339 361 0.97

3 4 8.3e-06 0.00088 20.0 0.3 2 23 368 389 367 389 0.97

4 4 1e-06 0.00011 22.8 0.2 1 23 396 419 396 419 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.0008	0.085	13.7	0.2	1	20	165	184	165	186	0.95
2	4	4.1e-06	0.00043	20.9	1.1	1	23	339	361	339	361	0.97
3	4	8.3e-06	0.00088	20.0	0.3	2	23	368	389	367	389	0.97
4	4	1e-06	0.00011	22.8	0.2	1	23	396	419	396	419	0.98

Sequence Information

Coding Sequence: ATGAATGACGAAAGGACTAGCTCGGTGATGTTTCCAGAAAATGAGACGACAGACAGAAGATTGGAAAGAATATCCCAAACATTCATCGACTTATCTAGATCAAGTTTTAGTTTGGACAAACAGGTCGTTCAAGCTGCTGGAATTCTTCACGAAAATTCCACCACAGAAATTATCAATGTGAATATATTATCTCAAAGAATTACATCGGTCATTCAAAATAATATTGTTGAGATTATTGAAGCTGGCGGTCGACTTTTTGCAAAAGAATATGTAAATCCGTGCTGTTGGCTAAAGATTATCACATTGGCCACAGACAGTCAAAGTCACAACGTTCTACTTATGATCAATGATGGTGCCGGACTTATATTAAAAACAACAAGAAATATTCTACCAGGAGAGCCGTTGTTGATGTGGTTCGACGATAGTATTTTGACGTTATTAAATATCCCATTTATTAGACCGGTGAATTGTAATTTTCAAGGTTCAGTATCGTACAGATGTCACATTTGCAGCACCTCCTTCGAGTATCCGAATCCTTTGAAATTGCACTTGGCATTGGACTGCGGTCGAATGGACACCAGTTACATCTGGACGCTCTTGTCGAACAAGATCGTTTCTTCGAGATCGAGTCTGTTTTTTAACCGATATCCGGGACGAAATTTCACGTTCGAACTGAATCCTCTGCCCGTCTTCGGGTCGTTAATGTTGCCGGTCGGTAGCCCGTCGCACACAGTGCCGAAAAGCGATACCAGTCGTTCACTGAAAAACGACTCGCCGTGTTCATCGAACGAAAAGTCACCTCCGTCCTCGAATAATCCCTCGCCGATCTCTTCGTATCCCTTACCGGAGATGTTACCAAACCCGTCGACTTACGAGCCGCGCATCGGGGGCGGTCTGATAAGTCGTCACTCGACTTCGAGGCCTTACTGGGTCGCAGAGAGGCCGGATCTCGAGAGAATGGATCCCGCGGACGTCGAAAGGATAGCCAGCGATATGGGCAAGTGCGGCATGGGTTACAAGTGCATCTTCTGCGGGAAGATCTACTCAAGGAAGTACGGTTTGCGAATCCATATTAGAACGCACAACGGCTACAAGCCACTACAGTGCAGAATTTGCGCGCGTAGATTTGGTGATCCGAGTAATCTCAACAAACATGTGAGATTGCACGCGACGGACGATAGTCCTTATAAGTGCGGCGTCTGCGGTAAAGTGTTGGTCAGGAGACGGGATCTTGAGAGGCACATAAATTCTAGACATAATCTGGATAAGAGTGATCTTTCCGTTTCTTCAAGCAGCGAAATCGATGGAGACTGA
Protein Sequence: MNDERTSSVMFPENETTDRRLERISQTFIDLSRSSFSLDKQVVQAAGILHENSTTEIINVNILSQRITSVIQNNIVEIIEAGGRLFAKEYVNPCCWLKIITLATDSQSHNVLLMINDGAGLILKTTRNILPGEPLLMWFDDSILTLLNIPFIRPVNCNFQGSVSYRCHICSTSFEYPNPLKLHLALDCGRMDTSYIWTLLSNKIVSSRSSLFFNRYPGRNFTFELNPLPVFGSLMLPVGSPSHTVPKSDTSRSLKNDSPCSSNEKSPPSSNNPSPISSYPLPEMLPNPSTYEPRIGGGLISRHSTSRPYWVAERPDLERMDPADVERIASDMGKCGMGYKCIFCGKIYSRKYGLRIHIRTHNGYKPLQCRICARRFGDPSNLNKHVRLHATDDSPYKCGVCGKVLVRRRDLERHINSRHNLDKSDLSVSSSSEIDGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01268534;
90% Identity: iTF_01267092;
80% Identity: -